Ranbp3l (RAN binding protein 3-like) - Rat Genome Database

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Gene: Ranbp3l (RAN binding protein 3-like) Mus musculus
Analyze
Symbol: Ranbp3l
Name: RAN binding protein 3-like
RGD ID: 1316825
MGI Page MGI
Description: Enables SMAD binding activity. Involved in mesenchymal cell differentiation involved in bone development; negative regulation of osteoblast differentiation; and positive regulation of myoblast differentiation. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm. Is expressed in meninges. Orthologous to human RANBP3L (RAN binding protein 3 like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C130037N17Rik; ran-binding protein 3-like
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,997,209 - 9,071,355 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl158,997,433 - 9,067,417 (+)EnsemblGRCm39 Ensembl
GRCm38158,967,949 - 9,067,335 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,967,949 - 9,067,335 (+)EnsemblGRCm38mm10GRCm38
MGSCv37158,918,119 - 8,956,192 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv37158,985,428 - 8,997,084 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36158,982,561 - 8,994,217 (+)NCBIMGSCv36mm8
Celera158,812,846 - 8,880,770 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map153.82NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function
protein binding  (ISO)
SMAD binding  (IPI,ISO)

References

References - curated
# Reference Title Reference Citation
1. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21873635   PMID:25755279   PMID:32554809   PMID:34233711   PMID:34321999  


Genomics

Comparative Map Data
Ranbp3l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,997,209 - 9,071,355 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl158,997,433 - 9,067,417 (+)EnsemblGRCm39 Ensembl
GRCm38158,967,949 - 9,067,335 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,967,949 - 9,067,335 (+)EnsemblGRCm38mm10GRCm38
MGSCv37158,918,119 - 8,956,192 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv37158,985,428 - 8,997,084 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36158,982,561 - 8,994,217 (+)NCBIMGSCv36mm8
Celera158,812,846 - 8,880,770 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map153.82NCBI
RANBP3L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38536,246,913 - 36,301,902 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl536,246,913 - 36,302,114 (-)EnsemblGRCh38hg38GRCh38
GRCh37536,247,015 - 36,302,004 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36536,284,861 - 36,337,761 (-)NCBINCBI36Build 36hg18NCBI36
Celera536,134,779 - 36,187,682 (-)NCBICelera
Cytogenetic Map5p13.2NCBI
HuRef536,200,738 - 36,253,651 (-)NCBIHuRef
CHM1_1536,251,851 - 36,304,761 (-)NCBICHM1_1
T2T-CHM13v2.0536,495,219 - 36,550,209 (-)NCBIT2T-CHM13v2.0
Ranbp3l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8259,785,070 - 59,840,338 (+)NCBIGRCr8
mRatBN7.2258,057,887 - 58,113,158 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl258,058,263 - 58,113,172 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0258,221,773 - 58,458,072 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl258,448,917 - 58,458,517 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0276,758,985 - 76,772,450 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0277,510,913 - 77,544,728 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4258,666,640 - 58,720,647 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1258,590,213 - 58,649,178 (+)NCBI
Celera253,666,881 - 53,721,420 (+)NCBICelera
Cytogenetic Map2q16NCBI
Ranbp3l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542621,052,647 - 21,107,110 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542621,054,463 - 21,106,290 (-)NCBIChiLan1.0ChiLan1.0
RANBP3L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2474,027,847 - 74,081,610 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1572,181,479 - 72,236,614 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0574,061,669 - 74,115,154 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1579,343,218 - 79,396,901 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl579,343,218 - 79,396,121 (+)Ensemblpanpan1.1panPan2
NADK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1472,297,480 - 72,341,176 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl472,297,114 - 72,339,460 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha471,907,202 - 71,950,907 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0472,805,112 - 72,848,811 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl472,804,721 - 72,848,810 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1472,550,564 - 72,594,244 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0472,674,148 - 72,717,850 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0473,207,561 - 73,251,269 (+)NCBIUU_Cfam_GSD_1.0
Ranbp3l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213225,773,116 - 225,840,760 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365185,531,004 - 5,579,942 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365185,531,094 - 5,579,471 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RANBP3L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1621,562,916 - 21,611,885 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11621,562,907 - 21,612,389 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21622,580,457 - 22,607,286 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RANBP3L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1435,095,520 - 35,156,378 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl435,096,196 - 35,155,543 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607125,426,557 - 25,477,496 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ranbp3l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475918,710,586 - 18,771,131 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475918,710,876 - 18,769,727 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ranbp3l
1007 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:421
Count of miRNA genes:346
Interacting mature miRNAs:371
Transcripts:ENSMUST00000053308, ENSMUST00000166524
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
1301136Pgia8_mproteoglycan induced arthritis 8 (mouse)Not determined15324016724388176Mouse
11252136Modvl4_mmodifier of vacuolated lens (mouse)15562049439620614Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
1357459Nhdlq7_mnon-HDL QTL 7 (mouse)Not determined15120489829Mouse
1300953Bdt5_mbone density traits 5 (mouse)Not determined15120489829Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15692948175871849Mouse
1301023Sluc24_msusceptibility to lung cancer 24 (mouse)Not determined15120489829Mouse
1301662Faq8_mfluctuating asymmetry QTL 8 (mouse)Not determined15120489829Mouse
26884439Sklq11_mskull length QTL 11, 10 week (mouse)15812948447663396Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
4141358Ath22_matherosclerosis 22 (mouse)Not determined346465237464652Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
26884429Zlq6_mzygomatic length QTL 6, 10 week (mouse)15682948144963396Mouse
27226759Feml17_mfemur length 17, 10 week (mouse)15762948155263396Mouse
27095940Ulnl8_mulna length 8, 10 week (mouse)15722948155263396Mouse
4141541Tglq3_mtriglyceride QTL 3 (mouse)Not determined15120489829Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15612948172471849Mouse
27226755Feml22_mfemur length 22, 16 week (mouse)15762948159271849Mouse
11062069Bpq31_mblood pressure QTL 31 (mouse)15126273195Mouse
1300594Eae2_msusceptibility to experimental allergic encephalomyelitis 2 (mouse)Not determined15131218736Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15612948176384200Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
26884409Bzwq16_mbi-zygomatic width QTL 16, 16 week (mouse)15612948138000244Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15612948171471849Mouse
5491193Mobq4_mmultigenic obesity QTL 4 (mouse)Not determined15120489829Mouse
27095922Pglq11_mpelvic girdle length QTL 11, 10 week (mouse)15812948438763395Mouse
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15347438971197538Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
4141446Ffaq4_mfree fatty acid QTL 4 (mouse)Not determined127101390Mouse
26884387Skwq8_mskull length QTL 8, 10 week (mouse)15612948168271849Mouse
1302121Cliff_mcliff drop aversion (mouse)Not determined15120489829Mouse
26884384Skwq12_mskull length QTL 12, 16 week (mouse)15612948150763396Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15612948175871849Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15692948175871849Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse

Markers in Region
D5Mit392.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7A3UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map6F1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic MapXF5UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic MapXF3UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map13A3.1UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map2E1UniSTS
cM Map528.0UniSTS
Whitehead Genetic518.6UniSTS
px-45f3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3G1UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map9E3.1UniSTS
cM Map316.4UniSTS
cM Map1354.0UniSTS
px-60g6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D1UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map17E2UniSTS
Cytogenetic Map10A4UniSTS
cM Map1354.0UniSTS
cM Map1740.0UniSTS
px-24g4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7CUniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map3H2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map3F2.3UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map12B1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic Map16C3.3UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map9A1UniSTS
Cytogenetic Map17E2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map17CUniSTS
cM Map91.0UniSTS
cM Map316.4UniSTS
cM Map1740.0UniSTS
cM Map1354.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_198024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC119167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC139209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC161575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC174670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FO907142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LXEJ02005474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MG954296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MG954297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000053308   ⟹   ENSMUSP00000055750
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl158,968,426 - 9,066,551 (+)Ensembl
Ensembl Acc Id: ENSMUST00000166524   ⟹   ENSMUSP00000130916
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl158,968,002 - 9,002,769 (+)Ensembl
Ensembl Acc Id: ENSMUST00000227191   ⟹   ENSMUSP00000154327
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,997,486 - 9,067,417 (+)Ensembl
GRCm38.p6 Ensembl159,007,266 - 9,067,335 (+)Ensembl
Ensembl Acc Id: ENSMUST00000228227
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,997,486 - 9,034,054 (+)Ensembl
GRCm38.p6 Ensembl158,968,002 - 9,005,231 (+)Ensembl
Ensembl Acc Id: ENSMUST00000229662
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl158,997,433 - 8,999,782 (+)Ensembl
GRCm38.p6 Ensembl158,967,949 - 8,970,298 (+)Ensembl
RefSeq Acc Id: NM_198024   ⟹   NP_932141
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,997,433 - 9,067,415 (+)NCBI
GRCm38158,967,949 - 9,067,335 (+)NCBI
MGSCv37158,918,119 - 8,956,192 (+)RGD
Celera158,812,676 - 8,880,770 (+)NCBI
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036159318   ⟹   XP_036015211
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,997,209 - 9,071,355 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159319   ⟹   XP_036015212
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,997,212 - 9,060,866 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159320   ⟹   XP_036015213
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39158,997,215 - 9,068,800 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159321   ⟹   XP_036015214
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39159,042,743 - 9,071,355 (+)NCBI
Sequence:
RefSeq Acc Id: NP_932141   ⟸   NM_198024
- UniProtKB: Q3V1J9 (UniProtKB/Swiss-Prot),   Q6PDH4 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000130916   ⟸   ENSMUST00000166524
Ensembl Acc Id: ENSMUSP00000055750   ⟸   ENSMUST00000053308
Ensembl Acc Id: ENSMUSP00000154327   ⟸   ENSMUST00000227191
RefSeq Acc Id: XP_036015211   ⟸   XM_036159318
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036015212   ⟸   XM_036159319
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036015213   ⟸   XM_036159320
- Peptide Label: isoform X3
- UniProtKB: A0A2I3BQU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036015214   ⟸   XM_036159321
- Peptide Label: isoform X4
Protein Domains
RanBD1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6PDH4-F1-model_v2 AlphaFold Q6PDH4 1-491 view protein structure

Promoters
RGD ID:8683376
Promoter ID:EPDNEW_M19718
Type:multiple initiation site
Name:Ranbp3l_1
Description:Mus musculus RAN binding protein 3-like , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19719  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38158,967,951 - 8,968,011EPDNEW
RGD ID:8683378
Promoter ID:EPDNEW_M19719
Type:initiation region
Name:Ranbp3l_2
Description:Mus musculus RAN binding protein 3-like , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19718  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38158,968,342 - 8,968,402EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444654 AgrOrtholog
Ensembl Genes ENSMUSG00000048424 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000227191 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000227191.3 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ran_bind_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RanBP1-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:223332 UniProtKB/Swiss-Prot
MGD MGI:2444654 ENTREZGENE
NCBI Gene 223332 ENTREZGENE
PANTHER PTHR23138 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAN-BINDING PROTEIN 3-LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ran_BP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ranbp3l PhenoGen
PROSITE RANBD1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RanBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2I3BQU7 ENTREZGENE, UniProtKB/TrEMBL
  Q3V1J9 ENTREZGENE
  Q6PDH4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3V1J9 UniProtKB/Swiss-Prot