Sirt7 (sirtuin 7) - Rat Genome Database

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Gene: Sirt7 (sirtuin 7) Rattus norvegicus
Analyze
Symbol: Sirt7
Name: sirtuin 7
RGD ID: 1305876
Description: Predicted to enable several functions, including chromatin binding activity; hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; and protein-propionyllysine depropionylase activity. Predicted to be involved in several processes, including chromatin remodeling; negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; and regulation of gene expression. Predicted to be located in nuclear speck; nucleolus organizer region; and site of double-strand break. Predicted to be part of chromatin. Predicted to be active in nucleus. Orthologous to human SIRT7 (sirtuin 7); PARTICIPATES IN histone modification pathway; RNA polymerase I transcription pathway; Sirtuin mediated pathway; INTERACTS WITH (-)-epigallocatechin 3-gallate; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC303745; NAD-dependent deacetylase sirtuin-7; NAD-dependent protein deacetylase sirtuin-7; NAD-dependent protein deacylase sirtuin-7; regulatory protein SIR2 homolog 7; SIR2-like protein 7; sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,394,802 - 106,401,627 (-)NCBIGRCr8
mRatBN7.210105,896,476 - 105,903,301 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,896,476 - 105,903,172 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,000,317 - 111,006,939 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,463,345 - 110,469,976 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,816,930 - 105,823,624 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,796,046 - 109,802,821 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,796,020 - 109,802,739 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,389,098 - 109,395,852 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,009,669 - 110,016,346 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,024,660 - 110,030,830 (-)NCBI
Celera10104,439,874 - 104,446,570 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The nucleolus-guardian of cellular homeostasis and genome integrity. Grummt I Chromosoma. 2013 Dec;122(6):487-97.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Physical and functional HAT/HDAC interplay regulates protein acetylation balance. Peserico A and Simone C, J Biomed Biotechnol. 2011;2011:371832. doi: 10.1155/2011/371832. Epub 2010 Dec 5.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. NAD(+) in aging, metabolism, and neurodegeneration. Verdin E Science. 2015 Dec 4;350(6265):1208-13. doi: 10.1126/science.aac4854.
Additional References at PubMed
PMID:12477932   PMID:16079181   PMID:19174463   PMID:22722849   PMID:24207024   PMID:24535021   PMID:25200183   PMID:26595207   PMID:26867678   PMID:26907567   PMID:27225932   PMID:27436229  
PMID:27581932   PMID:28426094   PMID:28582407   PMID:28655758   PMID:28772218   PMID:28790157   PMID:28880264   PMID:28886238   PMID:30026585   PMID:30420520   PMID:30540930   PMID:30653310  
PMID:30944854   PMID:31075303   PMID:31226208   PMID:31256246   PMID:31542297   PMID:31858380   PMID:33558457   PMID:34477918   PMID:35941302  


Genomics

Comparative Map Data
Sirt7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,394,802 - 106,401,627 (-)NCBIGRCr8
mRatBN7.210105,896,476 - 105,903,301 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,896,476 - 105,903,172 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,000,317 - 111,006,939 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,463,345 - 110,469,976 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,816,930 - 105,823,624 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,796,046 - 109,802,821 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,796,020 - 109,802,739 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,389,098 - 109,395,852 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,009,669 - 110,016,346 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,024,660 - 110,030,830 (-)NCBI
Celera10104,439,874 - 104,446,570 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
SIRT7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,911,939 - 81,918,176 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,911,939 - 81,921,323 (-)EnsemblGRCh38hg38GRCh38
GRCh371779,869,815 - 79,876,052 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,463,107 - 77,469,332 (-)NCBINCBI36Build 36hg18NCBI36
Celera1776,473,883 - 76,480,126 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,271,436 - 75,277,679 (-)NCBIHuRef
CHM1_11779,956,019 - 79,962,262 (-)NCBICHM1_1
T2T-CHM13v2.01782,779,099 - 82,785,336 (-)NCBIT2T-CHM13v2.0
Sirt7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,509,197 - 120,515,840 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,509,198 - 120,516,066 (-)EnsemblGRCm39 Ensembl
GRCm3811120,618,371 - 120,625,014 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,618,372 - 120,625,240 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,479,686 - 120,486,316 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,434,461 - 120,441,057 (-)NCBIMGSCv36mm8
Celera11132,353,665 - 132,360,296 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.34NCBI
Sirt7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,252,274 - 1,258,728 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,252,271 - 1,258,728 (+)NCBIChiLan1.0ChiLan1.0
SIRT7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,448,076 - 98,454,320 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,348,854 - 103,355,095 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,317,560 - 76,323,761 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,020,077 - 82,026,016 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,020,077 - 82,026,289 (-)Ensemblpanpan1.1panPan2
SIRT7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19377,141 - 383,355 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9376,445 - 442,919 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha9979,255 - 985,455 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09970,474 - 976,673 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9969,764 - 976,672 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19995,625 - 1,001,822 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,122,234 - 1,128,418 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,200,924 - 1,207,098 (+)NCBIUU_Cfam_GSD_1.0
Sirt7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602987,406 - 993,628 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,418,796 - 5,424,988 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,418,331 - 5,425,050 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SIRT7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,078,166 - 1,084,119 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,078,155 - 1,084,112 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SIRT7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,785,223 - 73,792,773 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1673,785,695 - 73,791,947 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,237,380 - 45,244,127 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sirt7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,753,333 - 10,764,122 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480110,753,480 - 10,760,601 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sirt7
25 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:63
Interacting mature miRNAs:66
Transcripts:ENSRNOT00000054951
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1051770177107211142Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
2300172Bmd57Bone mineral density QTL 579.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1069738412107211142Rat
2293646Bss25Bone structure and strength QTL 2510.960.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1069738412107211142Rat
2293663Bss33Bone structure and strength QTL 339.340.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1069738412107211142Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070199100107211142Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072224939107211142Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1072224939107211142Rat
2292438Bp311Blood pressure QTL 311arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1076246085107211142Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076452683107211142Rat
4889492Pancm2Pancreatic morphology QTL 23.2pancreatic beta cell morphology trait (VT:0005217)ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)1076748906107211142Rat
2303589Bw87Body weight QTL 872body mass (VT:0001259)body weight (CMO:0000012)1081285008107211142Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)1082685200107211142Rat
631538Oia5Oil induced arthritis QTL 5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087055121107211142Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087307617107211142Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1088539139107211142Rat
12880395Cm109Cardiac mass QTL 1090.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1090404397107211142Rat
12880396Am13Aortic mass QTL 130.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1090404397107211142Rat
12880398Kidm67Kidney mass QTL 670.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1090404397107211142Rat
12880384Cm107Cardiac mass QTL 1070.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)90404397107211142Rat
12880385Cm108Cardiac mass QTL 1080.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)90404397107211142Rat
1579915Bp280Blood pressure QTL 2800.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090404397107211142Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1090627439107057807Rat
724530Bp149Blood pressure QTL 1490.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1090627439107211142Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093223816107057807Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1094759759107211142Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1096703043107057807Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1096703043107057807Rat

Markers in Region
RH130955  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210105,896,533 - 105,896,745 (+)MAPPERmRatBN7.2
Rnor_6.010109,796,104 - 109,796,315NCBIRnor6.0
Rnor_5.010109,389,156 - 109,389,367UniSTSRnor5.0
RGSC_v3.410110,009,727 - 110,009,938UniSTSRGSC3.4
Celera10104,439,932 - 104,440,143UniSTS
Cytogenetic Map10q32.3UniSTS
RH138691  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210105,901,884 - 105,902,004 (+)MAPPERmRatBN7.2
Rnor_6.010109,801,455 - 109,801,574NCBIRnor6.0
Rnor_5.010109,394,507 - 109,394,626UniSTSRnor5.0
RGSC_v3.410110,015,059 - 110,015,178UniSTSRGSC3.4
Celera10104,445,283 - 104,445,402UniSTS
Cytogenetic Map10q32.3UniSTS
G73110  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210105,898,276 - 105,898,878 (+)MAPPERmRatBN7.2
Rnor_6.010109,797,847 - 109,798,448NCBIRnor6.0
Rnor_5.010109,390,899 - 109,391,500UniSTSRnor5.0
RGSC_v3.410110,011,470 - 110,012,071UniSTSRGSC3.4
Celera10104,441,675 - 104,442,276UniSTS
Cytogenetic Map10q32.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 10 46 31 19 31 66 35 40 11
Low 33 11 10 10 8 11 8 1 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000054951   ⟹   ENSRNOP00000051834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10105,896,476 - 105,903,172 (-)Ensembl
Rnor_6.0 Ensembl10109,796,020 - 109,802,739 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108043   ⟹   ENSRNOP00000086879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10105,896,476 - 105,903,172 (-)Ensembl
RefSeq Acc Id: NM_001107073   ⟹   NP_001100543
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,394,802 - 106,401,498 (-)NCBI
mRatBN7.210105,896,476 - 105,903,172 (-)NCBI
Rnor_6.010109,796,046 - 109,802,742 (-)NCBI
Rnor_5.010109,389,098 - 109,395,852 (-)NCBI
RGSC_v3.410110,009,669 - 110,016,346 (-)RGD
Celera10104,439,874 - 104,446,570 (-)RGD
Sequence:
RefSeq Acc Id: XM_008768477   ⟹   XP_008766699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,394,804 - 106,401,627 (-)NCBI
mRatBN7.210105,896,477 - 105,903,301 (-)NCBI
Rnor_6.010109,796,046 - 109,802,821 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039086225   ⟹   XP_038942153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810106,394,804 - 106,401,627 (-)NCBI
mRatBN7.210105,896,477 - 105,903,301 (-)NCBI
RefSeq Acc Id: NP_001100543   ⟸   NM_001107073
- UniProtKB: F1LQY4 (UniProtKB/Swiss-Prot),   B2RZ55 (UniProtKB/Swiss-Prot),   A0A8I6A4L4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008766699   ⟸   XM_008768477
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A4L4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000051834   ⟸   ENSRNOT00000054951
RefSeq Acc Id: XP_038942153   ⟸   XM_039086225
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A4L4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000086879   ⟸   ENSRNOT00000108043
Protein Domains
Deacetylase sirtuin-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RZ55-F1-model_v2 AlphaFold B2RZ55 1-402 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697969
Promoter ID:EPDNEW_R8494
Type:multiple initiation site
Name:Sirt7_1
Description:sirtuin 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.010109,802,735 - 109,802,795EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305876 AgrOrtholog
BioCyc Gene G2FUF-22402 BioCyc
Ensembl Genes ENSRNOG00000036683 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055030522 UniProtKB/Swiss-Prot
  ENSRNOG00060021286 UniProtKB/Swiss-Prot
  ENSRNOG00065004217 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000054951 ENTREZGENE
  ENSRNOT00000054951.5 UniProtKB/Swiss-Prot
  ENSRNOT00000108043.1 UniProtKB/TrEMBL
  ENSRNOT00055052956 UniProtKB/Swiss-Prot
  ENSRNOT00060036868 UniProtKB/Swiss-Prot
  ENSRNOT00065006154 UniProtKB/Swiss-Prot
Gene3D-CATH 2.20.28.200 UniProtKB/Swiss-Prot
  3.30.1600.10 UniProtKB/TrEMBL
  TPP-binding domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7099085 IMAGE-MGC_LOAD
InterPro DHS-like_NAD/FAD-binding_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sirtuin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sirtuin_cat_small_dom_sf UniProtKB/TrEMBL
  Ssirtuin_cat_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:303745 UniProtKB/Swiss-Prot
MGC_CLONE MGC:189272 IMAGE-MGC_LOAD
NCBI Gene 303745 ENTREZGENE
PANTHER NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SIR2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sirt7 PhenoGen
PROSITE SIRTUIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000036683 RatGTEx
  ENSRNOG00055030522 RatGTEx
  ENSRNOG00060021286 RatGTEx
  ENSRNOG00065004217 RatGTEx
Superfamily-SCOP SSF52467 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A4L4 ENTREZGENE, UniProtKB/TrEMBL
  B2RZ55 ENTREZGENE
  F1LQY4 ENTREZGENE
  SIR7_RAT UniProtKB/Swiss-Prot
UniProt Secondary F1LQY4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-16 Sirt7  sirtuin 7  Sirt7  sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Sirt7  sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae)   Sirt7_predicted  sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Sirt7_predicted  sirtuin 7 (silent mating type information regulation 2, homolog) 7 (S. cerevisiae) (predicted)      Symbol and Name status set to approved 70820 APPROVED