| Symbol: |
Ctsb |
| Name: |
cathepsin B |
| RGD ID: |
8810989 |
| Description: |
ENCODES a protein that exhibits collagen binding (ortholog); cysteine-type endopeptidase activity (ortholog); cysteine-type peptidase activity (ortholog); INVOLVED IN autophagy (ortholog); cellular response to mechanical stimulus (ortholog); cellular response to thyroid hormone stimulus (ortholog); PARTICIPATES IN chaperone mediated autophagy pathway; ASSOCIATED WITH acute necrotizing pancreatitis (ortholog); Albuminuria (ortholog); atherosclerosis (ortholog); FOUND IN apical plasma membrane (ortholog); caveola (ortholog); cell surface (ortholog) |
| Type: |
protein-coding
|
| RefSeq Status: |
MODEL |
| RGD Orthologs |
|
| Alliance Orthologs |
|
| More Info |
more info ...
|
| More Info |
| Species |
Gene symbol and name |
Data Source |
Assertion derived from |
less info ...
|
| Orthologs 1 |
| Homo sapiens (human): |
CTSB (cathepsin B) |
NCBI |
Ortholog |
| Mus musculus (house mouse): |
Ctsb (cathepsin B) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
| Rattus norvegicus (Norway rat): |
Ctsb (cathepsin B) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
| Pan paniscus (bonobo/pygmy chimpanzee): |
CTSB (cathepsin B) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
| Canis lupus familiaris (dog): |
CTSB (cathepsin B) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
| Sus scrofa (pig): |
CTSB (cathepsin B) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
| Chlorocebus sabaeus (green monkey): |
CTSB (cathepsin B) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
| Heterocephalus glaber (naked mole-rat): |
Ctsb (cathepsin B) |
Transitive Ortholog Pipeline |
Transitive Ortholog Pipeline |
|
| Latest Assembly: |
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
| ChiLan1.0 Ensembl | NW_004955403 | 53,085,574 - 53,093,809 (-) | Ensembl | ChiLan1.0 | | | | | ChiLan1.0 | NW_004955403 | 53,086,236 - 53,100,217 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
|
| JBrowse: |
View Region in Genome Browser (JBrowse)
|
| Model |
|
Ctsb
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
| ChiLan1.0 Ensembl | NW_004955403 | 53,085,574 - 53,093,809 (-) | Ensembl | ChiLan1.0 | | | | | ChiLan1.0 | NW_004955403 | 53,086,236 - 53,100,217 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
|
CTSB
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
| GRCh38 | 8 | 11,842,524 - 11,868,087 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | | GRCh38.p14 Ensembl | 8 | 11,842,524 - 11,869,533 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | | GRCh37 | 8 | 11,700,033 - 11,725,596 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | | Build 36 | 8 | 11,737,442 - 11,763,055 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | | Build 34 | 8 | 11,739,235 - 11,763,044 | NCBI | | | | | | Celera | 8 | 10,829,316 - 10,854,967 (-) | NCBI | | Celera | | | | Cytogenetic Map | 8 | p23.1 | NCBI | | | | | | HuRef | 8 | 10,630,970 - 10,656,616 (-) | NCBI | | HuRef | | | | CHM1_1 | 8 | 11,765,442 - 11,791,090 (-) | NCBI | | CHM1_1 | | | | T2T-CHM13v2.0 | 8 | 7,872,212 - 7,897,789 (+) | NCBI | | T2T-CHM13v2.0 | | |
|
Ctsb
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
| GRCm39 | 14 | 63,359,911 - 63,383,372 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | | GRCm39 Ensembl | 14 | 63,359,911 - 63,383,372 (+) | Ensembl | | GRCm39 Ensembl | | | | GRCm38 | 14 | 63,122,462 - 63,145,923 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | | GRCm38.p6 Ensembl | 14 | 63,122,462 - 63,145,923 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | | MGSCv37 | 14 | 63,741,302 - 63,764,758 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | | MGSCv36 | 14 | 62,076,575 - 62,100,031 (+) | NCBI | | MGSCv36 | mm8 | | | Celera | 14 | 60,885,230 - 60,908,693 (+) | NCBI | | Celera | | | | Cytogenetic Map | 14 | D1 | NCBI | | | | | | cM Map | 14 | 33.24 | NCBI | | | | |
|
Ctsb
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
| GRCr8 | 15 | 41,565,607 - 41,586,479 (+) | NCBI | | GRCr8 | | | | mRatBN7.2 | 15 | 37,389,636 - 37,410,508 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | | mRatBN7.2 Ensembl | 15 | 37,389,629 - 37,410,500 (+) | Ensembl | | mRatBN7.2 Ensembl | | | | UTH_Rnor_SHR_Utx | 15 | 39,242,069 - 39,263,185 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 15 | 40,392,878 - 40,413,994 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | | UTH_Rnor_WKY_Bbb_1.0 | 15 | 38,850,264 - 38,871,139 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | | Rnor_6.0 | 15 | 46,316,741 - 46,337,613 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | | Rnor_6.0 Ensembl | 15 | 46,316,741 - 46,337,612 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | | Rnor_5.0 | 15 | 50,081,535 - 50,102,407 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | | RGSC_v3.4 | 15 | 42,402,829 - 42,423,701 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | | RGSC_v3.1 | 15 | 42,418,600 - 42,439,400 (+) | NCBI | | | | | | Celera | 15 | 37,073,910 - 37,094,782 (+) | NCBI | | Celera | | | | Cytogenetic Map | 15 | p12 | NCBI | | | | |
|
CTSB
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
| NHGRI_mPanPan1-v2 | 7 | 28,312,794 - 28,336,877 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | | NHGRI_mPanPan1 | 8 | 4,339,018 - 4,363,094 (-) | NCBI | | NHGRI_mPanPan1 | | | | Mhudiblu_PPA_v0 | 8 | 7,333,498 - 7,359,264 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | |
|
CTSB
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
| CanFam3.1 | 25 | 26,048,237 - 26,056,570 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | | CanFam3.1 Ensembl | 25 | 26,048,253 - 26,055,801 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | | Dog10K_Boxer_Tasha | 25 | 26,693,298 - 26,713,566 (+) | NCBI | | Dog10K_Boxer_Tasha | | | | ROS_Cfam_1.0 | 25 | 26,191,391 - 26,211,634 (+) | NCBI | | ROS_Cfam_1.0 | | | | ROS_Cfam_1.0 Ensembl | 25 | 26,190,645 - 26,292,033 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | | UMICH_Zoey_3.1 | 25 | 26,136,951 - 26,157,236 (+) | NCBI | | UMICH_Zoey_3.1 | | | | UNSW_CanFamBas_1.0 | 25 | 26,041,126 - 26,061,383 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | | UU_Cfam_GSD_1.0 | 25 | 26,192,122 - 26,212,434 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
|
CTSB
(Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
| Sscrofa11.1 Ensembl | 14 | 15,011,711 - 15,033,877 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | | Sscrofa11.1 | 14 | 15,014,139 - 15,035,081 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | | Sscrofa10.2 | 14 | 16,202,844 - 16,223,498 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
|
CTSB
(Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
| ChlSab1.1 | 8 | 7,246,076 - 7,269,655 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | | ChlSab1.1 Ensembl | 8 | 7,246,013 - 7,268,854 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | | Vero_WHO_p1.0 | NW_023666052 | 35,165,795 - 35,191,160 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
|
Ctsb
(Heterocephalus glaber - naked mole-rat) |
|
.
| Ensembl Acc Id: |
ENSCLAT00000021606 ⟹ ENSCLAP00000021403 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
| ChiLan1.0 Ensembl | NW_004955403 | 53,085,574 - 53,093,809 (-) | Ensembl |
|
| RefSeq Acc Id: |
XM_005373830 ⟹ XP_005373887 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
| ChiLan1.0 | NW_004955403 | 53,086,236 - 53,100,217 (-) | NCBI |
|
| Sequence: |
TAGGGGCGGCAGCCAGCTGGGATCAGCTCGGTTCCGCTCCGCTCGGCTCGGTTCGGCTCTGCGCGCACGCGGCTGCGGCCCAGGCTCTGGCGCTGCTCTGTGGGTCCCCGCCCAGCATCAGGATGCGG
CGGTCCTTGGCCTCTCTCTGCTTCTGGCTGGCGCTCAGCAGTGCCTATAATGCGCCTTGGTTCCACCCGCTGTCCGACGAGCTGGTCACCTACGTCAACAAGCTGAACACGACGTGGCAGGCTGGACG
CAACTTCTACAACGTGGACATGAGCTACGTGAAGAGGCTGTGTGGTACCTACCTGGGTGGGCCCCGGCTGCCACAGAGGGTCGGGTTTGCCGAGGACATGAATCTGCCCGAGAGCTTCGATGCCCGGG
AACAGTGGCCCAACTGTCCGACCATCAAAGAGATCAGAGATCAGGGCTCCTGCGGCTCCTGCTGGGCGTTCGGGGCCGTGGGGGCCATGTCGGACCGGGTCTGCATCCACACCAACGGGCACGTCAAC
GTGGAGCTGTCTGCAGAGGACCTGCTCAGCTGCTGCGGCCCCATGTGTGGGGAGGGCTGTAATGGTGGCTACCCCTCCGAAGCTTGGGAATACTGGACCAAAAAAGGCCTGGTCTCTGGTGGCCTGTA
TGACTCCCATGTGGGCTGCAGACCCTACTCCATCCCTCCCTGTGAGCACCATGTGAACGGCACCCGGCCCCAGTGCACTGGGGAGGGTGGCGACACCCCCAAGTGCAGCAAGAGCTGCGAGCCCGGCT
ACTCCCCGTCCTACAAGGAAGACAAGCACTACGGGTACGATTCCTACAGCGTCTCCAATGTCGAGAGGGAGATCATGGCAGAGATCTACAAAAACGGCCCAGTGGAGGGCGCCTTCACCGTGTTCTCG
GACTTCCTGTCATACAAGTCAGGAGTGTACAGGCACGTAGCCGGAGAGGTGCTGGGGGGCCATGCCATCCGCATTCTGGGCTGGGGAAAGGAGAACGGTGTCCCCTACTGGCTGGTTGGCAACTCCTG
GAACGATGACTGGGGTGACCATGGCTTCTTTAAAATCGTCAGAGGAGAGGATCACTGTGGAATCGAGTCTGAAATCGTGGCTGGAATCCCGCGCACGGATCAGTACTGGGGGAGGTTCTAGTCTGCTG
TGAGCCTGGCTGGCCTGGGTGTTTTCCCTGAACGCAGCCAGCGGGACTGGGGGTGAGACGGCAAGTGTCTTCCGTTCTTGGGATTCACATAAGGCAGAGGTTTTAGACAGGGCCTGAAGGCCTGGCTC
GGGCTGCTCACACCTTCCCAGACAGCTGTCTTCCGAGGGTACCTGTCCCTCCTGGTCCCCAGCCTGGCCGGGGGGCGATGGCCATGGTGCACTCAGCATCCTCCCCCTGTGGACTCTGCCTGCGGCCC
CTGCTCTGGCTGCGGCCCCTCCCACCCACCCCACGCTCCTCCAGGAGCACGACAGACACAGCAGGTTTCCAGAGGAACAAGCACGCAGTTCCTGACGAAGGGCGAAGGCCCCGCAGCAGTCCCTCGGA
GCAAGTAGTCTTCTCCATGGACAGGTGCAGGGCAGGGTGGCAGCAGCCTCGAGAAAGCTGCCTTCCCCCAGGCTGCCGCCTCAGTGCCCTCTGGCGTCCGAGCCCTCTCCTGTTGATCTTGGCCTTGG
CTGATCCTTTTTCAGTAGTTTCACTTCCTGTGCACCTCAGCTGATCATGTGAATGGACAAGCTGGAGGAACTGCACAAGTTTCCCGGGTTGTCTCCTAATTGTGTGGCTTAAAATGAGTCCCGTGGGC
ACGATTCGCTTGCTGACTGCTGACCTCAGCGACCACGGTAAAACTAGTTTGGGAGAACGCAGCTTTTCCTGTTTAAAAGCAAGTCAGTGCTTCGCCCTGTCAATTTAACAAGGAACAACTGTGCCAAT
AAACGGTCTCGCCTCA
hide sequence
|
| RefSeq Acc Id: |
XP_005373887 ⟸ XM_005373830 |
| - UniProtKB: |
A0A8C2VVY0 (UniProtKB/TrEMBL) |
| - Sequence: |
MRRSLASLCFWLALSSAYNAPWFHPLSDELVTYVNKLNTTWQAGRNFYNVDMSYVKRLCGTYLGGPRLPQRVGFAEDMNLPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVGAMSDRVCIHTNGH
VNVELSAEDLLSCCGPMCGEGCNGGYPSEAWEYWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGTRPQCTGEGGDTPKCSKSCEPGYSPSYKEDKHYGYDSYSVSNVEREIMAEIYKNGPVEGAFTV
FSDFLSYKSGVYRHVAGEVLGGHAIRILGWGKENGVPYWLVGNSWNDDWGDHGFFKIVRGEDHCGIESEIVAGIPRTDQYWGRF
hide sequence
|
|
| Ensembl Acc Id: |
ENSCLAP00000021403 ⟸ ENSCLAT00000021606 |
|
|
|
