CTSB (cathepsin B) - Rat Genome Database

Name: CTSB
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: CTSB (cathepsin B) Canis lupus familiaris

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Symbol:

CTSB

Name:

cathepsin B

RGD ID:

12243179

Description:

ENCODES a protein that exhibits cysteine-type endopeptidase activity (ortholog); endopeptidase activity (ortholog); identical protein binding (ortholog); INVOLVED IN autophagy (ortholog); cellular response to mechanical stimulus (ortholog); decidualization (ortholog); PARTICIPATES IN chaperone mediated autophagy pathway; ASSOCIATED WITH acute necrotizing pancreatitis (ortholog); Albuminuria (ortholog); atherosclerosis (ortholog); FOUND IN apical plasma membrane (ortholog); caveola (ortholog); cell surface (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CTSB (cathepsin B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB
Mus musculus (house mouse):	Ctsb (cathepsin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ctsb (cathepsin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ctsb (cathepsin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CTSB (cathepsin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CTSB (cathepsin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CTSB (cathepsin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ctsb (cathepsin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	26,048,237 - 26,056,570 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	26,048,253 - 26,055,801 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	26,693,298 - 26,713,566 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	26,191,391 - 26,211,634 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	26,190,645 - 26,292,033 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	26,136,951 - 26,157,236 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	26,041,126 - 26,061,383 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	26,192,122 - 26,212,434 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute necrotizing pancreatitis (ISO)

Albuminuria (ISO)

atherosclerosis (ISO)

Atrioventricular Septal Defect 4 (ISO)

brain infarction (ISO)

brain ischemia (ISO)

breast cancer (ISO)

colitis (ISO)

Contusions (ISO)

COVID-19 (ISO)

diabetes mellitus (ISO)

Disease Progression (ISO)

esophagus adenocarcinoma (ISO)

Experimental Arthritis (ISO)

Experimental Diabetes Mellitus (ISO)

fascioliasis (ISO)

glioblastoma (ISO)

Guillain-Barre syndrome (ISO)

hepatocellular carcinoma (ISO)

high grade glioma (ISO)

Inflammatory Breast Neoplasms (ISO)

intracranial aneurysm (ISO)

Keratolytic Winter Erythema (ISO)

Mercury Poisoning, Nervous System (ISO)

metabolic dysfunction and alcohol associated liver disease (ISO)

multiple sclerosis (ISO)

muscular disease (ISO)

myocardial infarction (ISO)

Necrosis (ISO)

Neoplasm Invasiveness (ISO)

Neoplasm Metastasis (ISO)

Neurodevelopmental Disorders (ISO)

Optic Nerve Injuries (ISO)

otitis media (ISO)

polycystic kidney disease (ISO)

Prostatic Neoplasms (ISO)

proteinuria (ISO)

renal cell carcinoma (ISO)

renal tubular acidosis (ISO)

Reoviridae Infections (ISO)

Reperfusion Injury (ISO)

Skeletal Muscle Injuries (ISO)

Squalene Synthase Deficiency (ISO)

steatotic liver disease (ISO)

thoracic aortic aneurysm (ISO)

transitional cell carcinoma (ISO)

type 1 diabetes mellitus (ISO)

type 2 diabetes mellitus (ISO)

urinary bladder cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

autophagy (ISO)

cellular response to mechanical stimulus (ISO)

cellular response to thyroid hormone stimulus (IEA)

collagen catabolic process (IEA)

decidualization (IEA,ISO)

epithelial cell differentiation (IEA)

neuron apoptotic process (ISO)

protein catabolic process (ISO)

proteolysis (IEA)

proteolysis involved in protein catabolic process (IEA)

response to amine (ISO)

response to cytokine (ISO)

response to dexamethasone (ISO)

response to ethanol (ISO)

response to glucose (ISO)

response to interleukin-4 (ISO)

response to kainic acid (ISO)

response to mechanical stimulus (ISO)

response to peptide hormone (ISO)

skeletal muscle tissue development (ISO)

spermatogenesis (ISO)

symbiont entry into host cell (IEA)

thyroid hormone generation (IEA)

Cellular Component

apical plasma membrane (IEA,ISO)

caveola (ISO)

cell surface (ISO)

external side of plasma membrane (IEA,ISO)

extracellular region (ISO)

extracellular space (IEA,ISO)

lysosome (IEA)

peptidase inhibitor complex (IEA)

perinuclear region of cytoplasm (IEA)

sarcolemma (ISO)

Molecular Function

collagen binding (IEA)

cysteine-type endopeptidase activity (IEA,ISO)

cysteine-type peptidase activity (IEA)

endopeptidase activity (IEA,ISO)

identical protein binding (ISO)

kininogen binding (ISO)

peptidase activity (IEA)

peptide binding (ISO)

protein binding (ISO)

protein-containing complex binding (ISO)

proteoglycan binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

chaperone mediated autophagy pathway (ISO)

References

Additional References at PubMed

PMID:22278224	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CTSB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	26,048,237 - 26,056,570 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	26,048,253 - 26,055,801 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	26,693,298 - 26,713,566 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	26,191,391 - 26,211,634 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	26,190,645 - 26,292,033 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	26,136,951 - 26,157,236 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	26,041,126 - 26,061,383 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	26,192,122 - 26,212,434 (+)	NCBI		UU_Cfam_GSD_1.0

CTSB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	11,842,524 - 11,868,087 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	11,842,524 - 11,869,533 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	11,700,033 - 11,725,596 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	11,737,442 - 11,763,055 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	11,739,235 - 11,763,044	NCBI
Celera	8	10,829,316 - 10,854,967 (-)	NCBI		Celera
Cytogenetic Map	8	p23.1	NCBI
HuRef	8	10,630,970 - 10,656,616 (-)	NCBI		HuRef
CHM1_1	8	11,765,442 - 11,791,090 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	7,872,212 - 7,897,789 (+)	NCBI		T2T-CHM13v2.0

Ctsb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	63,359,911 - 63,383,372 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	63,359,911 - 63,383,372 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	63,122,462 - 63,145,923 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	63,122,462 - 63,145,923 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	63,741,302 - 63,764,758 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	62,076,575 - 62,100,031 (+)	NCBI		MGSCv36	mm8
Celera	14	60,885,230 - 60,908,693 (+)	NCBI		Celera
Cytogenetic Map	14	D1	NCBI
cM Map	14	33.24	NCBI

Ctsb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	41,565,607 - 41,586,479 (+)	NCBI		GRCr8
mRatBN7.2	15	37,389,636 - 37,410,508 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	37,389,629 - 37,410,500 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	39,242,069 - 39,263,185 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	40,392,878 - 40,413,994 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	38,850,264 - 38,871,139 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	46,316,741 - 46,337,613 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	46,316,741 - 46,337,612 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	50,081,535 - 50,102,407 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	42,402,829 - 42,423,701 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	42,418,600 - 42,439,400 (+)	NCBI
Celera	15	37,073,910 - 37,094,782 (+)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

Ctsb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	53,085,574 - 53,093,809 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	53,086,236 - 53,100,217 (-)	NCBI	ChiLan1.0	ChiLan1.0

CTSB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	28,312,794 - 28,336,877 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	4,339,018 - 4,363,094 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	7,333,498 - 7,359,264 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

CTSB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	15,011,711 - 15,033,877 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	15,014,139 - 15,035,081 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	16,202,844 - 16,223,498 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CTSB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	7,246,076 - 7,269,655 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	7,246,013 - 7,268,854 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666052	35,165,795 - 35,191,160 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ctsb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	25,366,840 - 25,373,954 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624758	25,366,120 - 25,384,554 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CTSB
174 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_022410039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038435237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038435238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038458195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038510183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038510184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038573646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038573647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038637947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038637948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_543203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000012692 ⟹ ENSCAFP00000011755

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	25	26,048,253 - 26,055,801 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000064880 ⟹ ENSCAFP00000059573

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	25	26,048,253 - 26,055,801 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845033017 ⟹ ENSCAFP00845025839

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	25	26,190,645 - 26,292,033 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845033096 ⟹ ENSCAFP00845025905

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	25	26,190,645 - 26,211,633 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845033154 ⟹ ENSCAFP00845025954

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	25	26,191,439 - 26,211,634 (+)	Ensembl

RefSeq Acc Id:

XM_022410039 ⟹ XP_022265747

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	25	26,050,802 - 26,056,570 (+)	NCBI
Dog10K_Boxer_Tasha	25	26,707,802 - 26,713,566 (+)	NCBI

Sequence:

show sequence

ATGCCCGCGAACAGTGGCCTAACTGCCCGACCATCAAAGAGATCCGAGACCAGGGTTCCTGCGG
TTCCTGCTGGCTGTAATGGAGGCTTTCCTGCTGAAGCTTGGAACTTCTGGACAAAGCAAGGCCT
GGTGTCGGGGGGCCTCTATGACTCTCATGTGGGCTGCAGACCCTACTCCATCCCTCCCTGTGAG
CACCACGTGAACGGCTCCCGGCCCCCATGCACAGGGGAGGGGGATACCCCCAAGTGCAGCAAGA
TCTGCGAGCCCGGCTACTCGCCGTCCTACAAAGAAGACAAACACTACGGATGCAGTTCCTACAG
TGTGTCCGATAACGAGAAGGAGATCATGGCAGAGATCTACAAAAACGGCCCGGTGGAGGCGGCC
TTCACCGTGTACTCCGACTTCCTGCTGTACAAGTCCGGAGTGTACCAGCACGTCACTGGAGAGA
TGATGGGAGGCCATGCCGTCCGTATCCTGGGCTGGGGAGTGGAGGATGGCACACCCTACTGGCT
GGTTGGCAACTCCTGGAACACTGACTGGGGCGACAATGGCTTCTTTAAAATCCTCAGAGGACGG
GATCACTGTGGAATTGAATCTGAAATCGTGGCTGGAATCCCATGTACTGACCAGTACTGGAAAA
AGATCTAATCTGCCATGGGACTGGCCCTGCCAGCCCTTGGGCAGTTTTCCCCCTAAATATAGCC
AGTTGGGCTGGTGAGGAGGTGGAGGGTAAGGAATGTCTTTTATTCTTTGAGTTCAGATAAGATA
CAAGAGGTTTTAGACAGGGCCTGAAGTATTGGGCCCAACCTCGTGTCTACCATCAGAGCTGTCT
TCCAAGGAGACACATCCAAGGCCTGGCTGCCCCCCAGCCCGTGGGGTGGACTGCAGTCCCAGTG
CACACTTAGACCACGTGAACCACTGCCGTGAGTGAAGCAAGGCCTCCCCCCTAGACTAGTGCTG
GGCCAGTAGTGCCCTCCTGTTCAGCTCCTGCTGTGGCTCCCTCCACGTCTTCCCCTCTCCATGC
ACGTCATGCAAGCAAGACGGAGACCCTAGAGGGTTTGTTAGGTGTTCCAAAGCCATAGAAAGTA
GAGTCCCTAATGAGACCAGTCCCCACCGGCGGCGGCACTTCTAAGCAAGTAGCTCACTAGATTT
GGAAGAGGTTGGAAAGAAAGGTAGTGGAGCAGCCCTTGGGAGAAAGCCATTCTCCCGGGGCCCC
TGCATCTCCTGAGCTTATAGTCAAGTAGCCTCAAAGACCCTCAACGGTCTGGTCCTTGGCATGA
TTCCTTTTTCAATATACGTTTTATTTTTTGTGCACCTCTGCTGATCATGTGAATGAAAGAGGAA
CAGCTGGAAGAGCTGTACTCACTTTACGGACTGTCTGTCCCCTTACAACAAAACTGGGTGGTCC
TGACCCGACTGGCCTACCAGCATAATCAGTGGAAGCTCATTTGGGGAGAAACCGGCTTTAACTG
TTTAAAAGTCACTGCTTCACTCTCTTAATTCAACAAGGAAAGGAATGACTATGCCAATAAAACG
TTTTCTCCCTTA

hide sequence

RefSeq Acc Id:

XM_038435237 ⟹ XP_038291165

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	25	26,191,391 - 26,211,634 (+)	NCBI

RefSeq Acc Id:

XM_038435238 ⟹ XP_038291166

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	25	26,205,875 - 26,211,634 (+)	NCBI

RefSeq Acc Id:

XM_038458195 ⟹ XP_038314123

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	25	26,693,298 - 26,713,566 (+)	NCBI

RefSeq Acc Id:

XM_038510183 ⟹ XP_038366111

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	25	26,136,951 - 26,157,236 (+)	NCBI

RefSeq Acc Id:

XM_038510184 ⟹ XP_038366112

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	25	26,151,469 - 26,157,236 (+)	NCBI

RefSeq Acc Id:

XM_038573646 ⟹ XP_038429574

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	25	26,192,122 - 26,212,434 (+)	NCBI

RefSeq Acc Id:

XM_038573647 ⟹ XP_038429575

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	25	26,206,660 - 26,212,434 (+)	NCBI

RefSeq Acc Id:

XM_038637947 ⟹ XP_038493875

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	25	26,041,126 - 26,061,383 (+)	NCBI

RefSeq Acc Id:

XM_038637948 ⟹ XP_038493876

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	25	26,055,619 - 26,061,383 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_022265747	(Get FASTA)	NCBI Sequence Viewer
	XP_038291165	(Get FASTA)	NCBI Sequence Viewer
	XP_038291166	(Get FASTA)	NCBI Sequence Viewer
	XP_038314123	(Get FASTA)	NCBI Sequence Viewer
	XP_038366111	(Get FASTA)	NCBI Sequence Viewer
	XP_038366112	(Get FASTA)	NCBI Sequence Viewer
	XP_038429574	(Get FASTA)	NCBI Sequence Viewer
	XP_038429575	(Get FASTA)	NCBI Sequence Viewer
	XP_038493875	(Get FASTA)	NCBI Sequence Viewer
	XP_038493876	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000011755.4
	ENSCAFP00000059573.2
	ENSCAFP00030029452.1
	ENSCAFP00030029508.1
	ENSCAFP00030029593.1
	ENSCAFP00030029669.1
	ENSCAFP00845025839.1
	ENSCAFP00845025905
	ENSCAFP00845025905.1
	ENSCAFP00845025954.1

RefSeq Acc Id:

XP_022265747 ⟸ XM_022410039

- Peptide Label:

isoform X2

- Sequence:

show sequence

MPANSGLTARPSKRSETRVPAVPAGCNGGFPAEAWNFWTKQGLVSGGLYDSHVGCRPYSIPPCE
HHVNGSRPPCTGEGDTPKCSKICEPGYSPSYKEDKHYGCSSYSVSDNEKEIMAEIYKNGPVEAA
FTVYSDFLLYKSGVYQHVTGEMMGGHAVRILGWGVEDGTPYWLVGNSWNTDWGDNGFFKILRGR
DHCGIESEIVAGIPCTDQYWKKI

hide sequence

Ensembl Acc Id:

ENSCAFP00000059573 ⟸ ENSCAFT00000064880

Ensembl Acc Id:

ENSCAFP00000011755 ⟸ ENSCAFT00000012692

RefSeq Acc Id:	XP_038366111 ⟸ XM_038510183
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038366112 ⟸ XM_038510184
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038493875 ⟸ XM_038637947
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038493876 ⟸ XM_038637948
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038291165 ⟸ XM_038435237
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NN14 (UniProtKB/TrEMBL), A0A8C0QZE3 (UniProtKB/TrEMBL), A0A8I3P7H9 (UniProtKB/TrEMBL), A0A8I3P7L9 (UniProtKB/TrEMBL), A0A8P0SD21 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038291166 ⟸ XM_038435238
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038314123 ⟸ XM_038458195
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NN14 (UniProtKB/TrEMBL), A0A8C0QZE3 (UniProtKB/TrEMBL), A0A8I3P7H9 (UniProtKB/TrEMBL), A0A8I3P7L9 (UniProtKB/TrEMBL), A0A8P0SD21 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038429574 ⟸ XM_038573646
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3P7L9 (UniProtKB/TrEMBL), A0A8P0SD21 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038429575 ⟸ XM_038573647
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSCAFP00845025839 ⟸ ENSCAFT00845033017

Ensembl Acc Id:

ENSCAFP00845025954 ⟸ ENSCAFT00845033154

Ensembl Acc Id:

ENSCAFP00845025905 ⟸ ENSCAFT00845033096

Protein Domains

Peptidase C1A papain C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000007934	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030018340	UniProtKB/TrEMBL
	ENSCAFG00845018672	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000012692.5	UniProtKB/TrEMBL
	ENSCAFT00000064880.2	UniProtKB/TrEMBL
	ENSCAFT00030033765.1	UniProtKB/TrEMBL
	ENSCAFT00030033837.1	UniProtKB/TrEMBL
	ENSCAFT00030033938.1	UniProtKB/TrEMBL
	ENSCAFT00030034024.1	UniProtKB/TrEMBL
	ENSCAFT00845033017.1	UniProtKB/TrEMBL
	ENSCAFT00845033096	ENTREZGENE
	ENSCAFT00845033096.1	UniProtKB/TrEMBL
	ENSCAFT00845033154.1	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine proteinases	UniProtKB/TrEMBL
InterPro	Papain-like_cys_pep_sf	UniProtKB/TrEMBL
	Pept_asp_AS	UniProtKB/TrEMBL
	Pept_cys_AS	UniProtKB/TrEMBL
	Pept_his_AS	UniProtKB/TrEMBL
	Peptidase_C1A	UniProtKB/TrEMBL
	Peptidase_C1A_C	UniProtKB/TrEMBL
	Propeptide_C1A	UniProtKB/TrEMBL
NCBI Gene	CTSB	ENTREZGENE
PANTHER	CATHEPSIN B	UniProtKB/TrEMBL
	CYSTEINE PROTEASE FAMILY C1-RELATED	UniProtKB/TrEMBL
Pfam	Peptidase_C1	UniProtKB/TrEMBL
	Propeptide_C1	UniProtKB/TrEMBL
PRINTS	PAPAIN	UniProtKB/TrEMBL
PROSITE	THIOL_PROTEASE_ASN	UniProtKB/TrEMBL
	THIOL_PROTEASE_CYS	UniProtKB/TrEMBL
	THIOL_PROTEASE_HIS	UniProtKB/TrEMBL
SMART	Pept_C1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54001	UniProtKB/TrEMBL
UniProt	A0A8C0NMI5_CANLF	UniProtKB/TrEMBL
	A0A8C0NN14	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0NU46_CANLF	UniProtKB/TrEMBL
	A0A8C0P4G7_CANLF	UniProtKB/TrEMBL
	A0A8C0QZE3	ENTREZGENE
	A0A8I3P7H9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3P7L9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3S0M3_CANLF	UniProtKB/TrEMBL
	A0A8P0SD21	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:39709	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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