Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Cxcl6 (C-X-C motif chemokine ligand 6) Rattus norvegicus
Analyze
Symbol: Cxcl6
Name: C-X-C motif chemokine ligand 6
Description: Exhibits chemokine activity. Involved in several processes, including cellular response to lipopolysaccharide; nervous system development; and positive regulation of receptor signaling pathway via JAK-STAT. Localizes to extracellular space. Used to study colon carcinoma. Biomarker of prostatitis and severe acute respiratory syndrome. Human ortholog(s) of this gene implicated in idiopathic pulmonary fibrosis. Orthologous to several human genes including CXCL6 (C-X-C motif chemokine ligand 6); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: C-X-C motif chemokine 5; chemokine (C-X-C motif) ligand 5; chemokine (C-X-C motif) ligand 6; chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2); CXC chemokine LIX; Cxcl5; cytokine LIX; LOC60665; small-inducible cytokine B5
Orthologs:
Homo sapiens (human) : CXCL6 (C-X-C motif chemokine ligand 6)  HGNC  Alliance
Mus musculus (house mouse) : Cxcl5 (chemokine (C-X-C motif) ligand 5)  MGI  Alliance
Pan paniscus (bonobo/pygmy chimpanzee) : CXCL6 (C-X-C motif chemokine ligand 6)
Sus scrofa (pig) : AMCF-II (alveolar macrophage-derived chemotactic factor-II)
Chlorocebus sabaeus (African green monkey) : CXCL6 (C-X-C motif chemokine ligand 6)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01418,860,201 - 18,920,839 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1418,860,264 - 18,862,407 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01418,770,999 - 18,771,910 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41418,825,357 - 18,826,269 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11418,825,357 - 18,826,269 (-)NCBI
Celera1416,687,262 - 16,688,187 (-)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Cxcl6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 708540
Created: 2003-09-23
Species: Rattus norvegicus
Last Modified: 2020-09-09
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.