Lgals3 (galectin 3) - Rat Genome Database

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Gene: Lgals3 (galectin 3) Rattus norvegicus
Analyze
Symbol: Lgals3
Name: galectin 3
RGD ID: 69356
Description: Enables several functions, including Fc-gamma receptor I complex binding activity; IgE binding activity; and advanced glycation end-product receptor activity. Involved in several processes, including negative regulation of cell proliferation in bone marrow; positive regulation of angiogenesis; and positive regulation of serotonin secretion. Located in several cellular components, including cell surface; extracellular space; and nucleus. Biomarker of several diseases, including acute kidney failure; attention deficit hyperactivity disorder; brain ischemia; congestive heart failure; and type 1 diabetes mellitus. Human ortholog(s) of this gene implicated in asthma. Orthologous to human LGALS3 (galectin 3); PARTICIPATES IN Hedgehog signaling pathway; INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 35 kDa lectin; AGE-R3; carbohydrate-binding protein 35; CBP 35; CBP30; epsilon BP; gal-3; galactose-specific lectin 3; galectin-3; IgE binding protein; L-34; laminin-binding protein; lectin galactoside-binding soluble 3 protein; lectin L-29; lectin, galactose binding, soluble 3; lectin, galactoside-binding, soluble, 3; mac-2 antigen; MGC105387
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21520,620,083 - 20,632,019 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1520,607,692 - 20,632,025 (+)Ensembl
Rnor_6.01524,153,602 - 24,165,537 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1524,141,651 - 24,165,537 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01528,094,344 - 28,106,281 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41523,327,071 - 23,339,006NCBIRGSC3.4rn4RGSC3.4
Celera1521,014,742 - 21,026,522 (+)NCBICelera
Cytogenetic Map15p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,1-dichloroethene  (ISO)
1,4-dichlorobenzene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
2-nitrofluorene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-chloropropane-1,2-diol  (EXP)
3-methylcholanthrene  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
aristolochic acid  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-naphthoflavone  (ISO)
bexarotene  (EXP)
bezafibrate  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bleomycin A2  (ISO)
bucladesine  (ISO)
buspirone  (EXP)
cadmium dichloride  (EXP)
calcitriol  (ISO)
calyculin a  (ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
chloroform  (EXP)
choline  (ISO)
ciglitazone  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cycloheximide  (ISO)
cyclosporin A  (ISO)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
dibenzo[a,l]pyrene  (ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (EXP,ISO)
dimethylarsinic acid  (EXP)
dioxygen  (EXP,ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
erythromycin estolate  (EXP)
etoposide  (ISO)
fenamidone  (ISO)
flurbiprofen  (ISO)
folic acid  (EXP,ISO)
genistein  (ISO)
glafenine  (EXP)
isoprenaline  (ISO)
ivermectin  (ISO)
L-ascorbic acid  (EXP)
L-methionine  (ISO)
lactose  (ISO)
leflunomide  (ISO)
LY294002  (ISO)
manganese(II) chloride  (EXP)
medroxyprogesterone acetate  (ISO)
mercury dibromide  (ISO)
methapyrilene  (EXP)
methimazole  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
microcystin-LR  (ISO)
mifepristone  (EXP)
mitomycin C  (ISO)
monocrotaline  (EXP)
N,N-diethyl-m-toluamide  (EXP)
N-acetylsphingosine  (ISO)
N-ethyl-N-nitrosourea  (EXP)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-methyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (EXP,ISO)
N-nitrosomorpholine  (EXP)
naloxone  (EXP)
nickel atom  (ISO)
nickel subsulfide  (EXP)
nickel sulfate  (ISO)
Nonylphenol  (ISO)
oxycodone  (EXP)
ozone  (EXP)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
perfluorooctanoic acid  (ISO)
permethrin  (EXP)
phenacetin  (EXP)
phenobarbital  (EXP,ISO)
phenylhydrazine  (EXP)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
phosgene  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
quinolin-8-ol  (ISO)
quinoline  (ISO)
rac-lactic acid  (ISO)
resveratrol  (EXP)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
streptozocin  (EXP)
sulindac  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
tetracycline  (EXP)
theophylline  (EXP)
thioacetamide  (EXP,ISO)
titanium dioxide  (ISO)
tremolite asbestos  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vanadyl sulfate  (EXP)
vancomycin  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
antimicrobial humoral immune response mediated by antimicrobial peptide  (ISO)
eosinophil chemotaxis  (IBA,IEA,ISO)
epithelial cell differentiation  (IEA,ISO)
extracellular matrix organization  (ISO)
innate immune response  (IEA)
killing of cells of other organism  (ISO)
macrophage chemotaxis  (IBA,IEA,ISO)
maintenance of protein location  (ISO)
monocyte chemotaxis  (IBA,IEA,ISO)
mononuclear cell migration  (ISO)
mRNA processing  (IEA)
negative regulation of apoptotic process  (IDA)
negative regulation of cell proliferation in bone marrow  (IDA)
negative regulation of endocytosis  (IBA,IEA,ISO)
negative regulation of extrinsic apoptotic signaling pathway  (IBA,IEA,ISO)
negative regulation of immunological synapse formation  (ISO)
negative regulation of T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell  (ISO)
negative regulation of T cell receptor signaling pathway  (ISO)
neutrophil chemotaxis  (IBA,IEA,ISO)
positive chemotaxis  (IBA,IEA,ISO)
positive regulation of angiogenesis  (IMP)
positive regulation of calcium ion import  (IBA,IEA,ISO)
positive regulation of cell population proliferation  (IMP)
positive regulation of dendritic cell differentiation  (ISO)
positive regulation of mononuclear cell migration  (IEA,ISO)
positive regulation of protein localization to plasma membrane  (IEA,ISO)
positive regulation of protein-containing complex assembly  (IEA,ISO)
positive regulation of serotonin secretion  (IDA)
regulation of extrinsic apoptotic signaling pathway via death domain receptors  (IEA,ISO)
regulation of T cell apoptotic process  (IEA,ISO)
regulation of T cell proliferation  (IEA,ISO)
RNA splicing  (IEA)
skeletal system development  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Albrandt K, etal., Proc Natl Acad Sci U S A 1987 Oct;84(19):6859-63.
2. Arar C, etal., FEBS Lett. 1998 Jul 3;430(3):307-11.
3. Bellac CL, etal., Neurobiol Dis. 2007 Nov;28(2):175-83. Epub 2007 Jul 10.
4. Binh NH, etal., J Neurooncol. 2013 Jan;111(2):123-32. doi: 10.1007/s11060-012-1005-2. Epub 2012 Nov 23.
5. Calvier L, etal., Arterioscler Thromb Vasc Biol. 2013 Jan;33(1):67-75. doi: 10.1161/ATVBAHA.112.300569. Epub 2012 Nov 1.
6. Frigeri LG, etal., Biochemistry. 1993 Aug 3;32(30):7644-9.
7. Frigeri LG, etal., J Biol Chem. 1990 Dec 5;265(34):20763-9.
8. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
9. Gil CD, etal., Inflamm Res. 2006 Mar;55(3):99-107.
10. Gitik M, etal., J Neuroinflammation. 2011 Mar 15;8:24. doi: 10.1186/1742-2094-8-24.
11. GOA data from the GO Consortium
12. Henderson NC, etal., Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5060-5. Epub 2006 Mar 20.
13. Ito M, etal., Clin Immunol. 2010 Jun;135(3):459-65. doi: 10.1016/j.clim.2010.02.002. Epub 2010 Mar 1.
14. Karlsen AE, etal., Biochem Biophys Res Commun. 2006 May 26;344(1):406-15. Epub 2006 Mar 29.
15. Krugluger W, etal., Immunobiology. 1997 Jun;197(1):97-109.
16. Liu FT, etal., Proc Natl Acad Sci U S A 1985 Jun;82(12):4100-4.
17. Lopez E, etal., J Immunol. 2006 Feb 1;176(3):1943-50.
18. Maeda N, etal., J Biol Chem. 2003 May 23;278(21):18938-44. Epub 2003 Mar 19.
19. MGD data from the GO Consortium
20. NCBI rat LocusLink and RefSeq merged data July 26, 2002
21. Nishiyama J, etal., Am J Pathol. 2000 Sep;157(3):815-23.
22. Pipeline to import Pathway Interaction Database annotations from NCI into RGD
23. RGD automated data pipeline
24. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
25. RGD automated import pipeline for gene-chemical interactions
26. Sharma UC, etal., Circulation. 2004 Nov 9;110(19):3121-8. Epub 2004 Nov 1.
27. Shou J, etal., Arthritis Res Ther. 2006;8(1):R28. Epub 2006 Jan 10.
28. Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
29. VanGuilder HD, etal., PLoS One. 2011 Jan 13;6(1):e16271. doi: 10.1371/journal.pone.0016271.
30. Vlassara H, etal., Mol Med. 1995 Sep;1(6):634-46.
31. Walther M, etal., J Neurosci Res. 2000 Aug 15;61(4):430-5.
32. Wu L, etal., Brain Pathol. 2010 Nov;20(6):1042-54. doi: 10.1111/j.1750-3639.2010.00410.x. Epub 2010 Jun 14.
33. Yan YP, etal., Brain Res. 2009 Sep 8;1288:116-24. doi: 10.1016/j.brainres.2009.06.073. Epub 2009 Jun 30.
Additional References at PubMed
PMID:2261464   PMID:2402511   PMID:2605254   PMID:7682704   PMID:8253805   PMID:8692888   PMID:9447709   PMID:10745073   PMID:10925302   PMID:11532191   PMID:11856751   PMID:12477932  
PMID:12615069   PMID:14622091   PMID:14961764   PMID:15265923   PMID:15489334   PMID:15646023   PMID:15729693   PMID:15800063   PMID:16116184   PMID:16131647   PMID:16691442   PMID:16982911  
PMID:17202886   PMID:17592963   PMID:19015643   PMID:19016746   PMID:19056867   PMID:19199708   PMID:19706535   PMID:19785949   PMID:19946888   PMID:20551380   PMID:20826656   PMID:20865664  
PMID:20980634   PMID:21188523   PMID:21435650   PMID:21472689   PMID:21492153   PMID:21566659   PMID:21670307   PMID:22658674   PMID:22664934   PMID:22761016   PMID:23376485   PMID:23460747  
PMID:23533145   PMID:23576987   PMID:23580065   PMID:24006456   PMID:24846175   PMID:25481849   PMID:25489662   PMID:26875907   PMID:27010252   PMID:27068509   PMID:27559042   PMID:27836669  
PMID:27870162   PMID:28255782   PMID:28360193   PMID:28431936   PMID:28500071   PMID:28758988   PMID:28826890   PMID:28858976   PMID:29286090   PMID:30463073   PMID:30724100   PMID:30795916  
PMID:31763668   PMID:32090685   PMID:32311288   PMID:32667865   PMID:33275526  


Genomics

Comparative Map Data
Lgals3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21520,620,083 - 20,632,019 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1520,607,692 - 20,632,025 (+)Ensembl
Rnor_6.01524,153,602 - 24,165,537 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1524,141,651 - 24,165,537 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01528,094,344 - 28,106,281 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41523,327,071 - 23,339,006NCBIRGSC3.4rn4RGSC3.4
Celera1521,014,742 - 21,026,522 (+)NCBICelera
Cytogenetic Map15p14NCBI
LGALS3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1455,124,110 - 55,145,423 (+)EnsemblGRCh38hg38GRCh38
GRCh381455,129,252 - 55,145,430 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371455,595,970 - 55,612,148 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361454,665,625 - 54,681,901 (+)NCBINCBI36hg18NCBI36
Build 341454,665,757 - 54,681,881NCBI
Celera1435,645,428 - 35,661,641 (+)NCBI
Cytogenetic Map14q22.3NCBI
HuRef1435,758,537 - 35,774,750 (+)NCBIHuRef
CHM1_11455,534,573 - 55,550,756 (+)NCBICHM1_1
Lgals3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391447,611,317 - 47,623,624 (+)NCBIGRCm39mm39
GRCm39 Ensembl1447,605,208 - 47,623,617 (+)Ensembl
GRCm381447,373,860 - 47,386,167 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1447,367,751 - 47,386,160 (+)EnsemblGRCm38mm10GRCm38
MGSCv371447,993,535 - 48,005,842 (+)NCBIGRCm37mm9NCBIm37
MGSCv361446,295,795 - 46,308,037 (+)NCBImm8
Celera1443,562,063 - 43,575,064 (+)NCBICelera
Cytogenetic Map14C1NCBI
Lgals3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554098,447,774 - 8,452,438 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554098,448,120 - 8,452,437 (-)NCBIChiLan1.0ChiLan1.0
LGALS3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11453,990,023 - 54,006,412 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1453,990,023 - 54,006,412 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01435,715,850 - 35,732,263 (+)NCBIMhudiblu_PPA_v0panPan3
LGALS3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1830,977,438 - 30,994,711 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl830,983,633 - 30,994,705 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha830,752,177 - 30,763,224 (+)NCBI
ROS_Cfam_1.0831,236,480 - 31,254,738 (+)NCBI
UMICH_Zoey_3.1830,846,505 - 30,857,542 (+)NCBI
UNSW_CanFamBas_1.0830,923,589 - 30,934,646 (+)NCBI
UU_Cfam_GSD_1.0831,288,737 - 31,299,778 (+)NCBI
Lgals3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864074,252,712 - 74,264,450 (-)NCBI
SpeTri2.0NW_00493669720,861 - 38,568 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LGALS3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1184,478,710 - 184,497,951 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11184,478,639 - 184,496,155 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21204,956,478 - 204,974,108 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LGALS3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12432,311,343 - 32,328,335 (+)NCBI
ChlSab1.1 Ensembl2432,311,271 - 32,328,339 (+)Ensembl
Vero_WHO_p1.0NW_02366605320,546,585 - 20,562,993 (+)NCBI
Lgals3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473114,300,138 - 14,307,843 (-)NCBI

Position Markers
RH127694  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21520,630,850 - 20,631,876 (+)MAPPERmRatBN7.2
Rnor_6.01524,164,371 - 24,165,396NCBIRnor6.0
Rnor_5.01528,105,113 - 28,106,138UniSTSRnor5.0
RGSC_v3.41523,337,840 - 23,338,865UniSTSRGSC3.4
Celera1521,025,356 - 21,026,381UniSTS
RH 3.4 Map15143.2UniSTS
Cytogenetic Map15p14UniSTS
PMC263848P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21520,630,798 - 20,630,919 (+)MAPPERmRatBN7.2
Rnor_6.01524,164,319 - 24,164,439NCBIRnor6.0
Rnor_5.01528,105,061 - 28,105,181UniSTSRnor5.0
RGSC_v3.41523,337,788 - 23,337,908UniSTSRGSC3.4
Celera1521,025,304 - 21,025,424UniSTS
Cytogenetic Map15p14UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)colorectal tumor number (CMO:0001794)15226636822711984Rat
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15226636822711984Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151448116528469888Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:153
Count of miRNA genes:116
Interacting mature miRNAs:135
Transcripts:ENSRNOT00000014216
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 8
Medium 1 27 53 37 19 37 8 11 31 30 11 8
Low 16 4 4 4 72 4 11
Below cutoff 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039093700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB183247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC089054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J02962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF639951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF639952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF639953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF639954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF639955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF639956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF639957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF639958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF639959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M13697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000014216   ⟹   ENSRNOP00000014216
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1520,620,083 - 20,632,012 (+)Ensembl
Rnor_6.0 Ensembl1524,153,602 - 24,165,537 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082304   ⟹   ENSRNOP00000070344
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1520,607,692 - 20,632,025 (+)Ensembl
Rnor_6.0 Ensembl1524,141,651 - 24,165,535 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000082675   ⟹   ENSRNOP00000070203
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1520,620,083 - 20,632,014 (+)Ensembl
Rnor_6.0 Ensembl1524,159,647 - 24,165,418 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106924   ⟹   ENSRNOP00000097784
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1520,620,097 - 20,632,025 (+)Ensembl
RefSeq Acc Id: NM_031832   ⟹   NP_114020
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,620,083 - 20,632,017 (+)NCBI
Rnor_6.01524,153,602 - 24,165,537 (+)NCBI
Rnor_5.01528,094,344 - 28,106,281 (+)NCBI
RGSC_v3.41523,327,071 - 23,339,006 (+)RGD
Celera1521,014,742 - 21,026,522 (+)RGD
Sequence:
RefSeq Acc Id: XM_039093700   ⟹   XP_038949628
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21520,620,331 - 20,632,019 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_114020   ⟸   NM_031832
- UniProtKB: P08699 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070203   ⟸   ENSRNOT00000082675
RefSeq Acc Id: ENSRNOP00000070344   ⟸   ENSRNOT00000082304
RefSeq Acc Id: ENSRNOP00000014216   ⟸   ENSRNOT00000014216
RefSeq Acc Id: XP_038949628   ⟸   XM_039093700
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000097784   ⟸   ENSRNOT00000106924
Protein Domains
Galectin

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699612
Promoter ID:EPDNEW_R10136
Type:multiple initiation site
Name:Lgals3_1
Description:galectin 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01524,153,602 - 24,153,662EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:69356 AgrOrtholog
Ensembl Genes ENSRNOG00000010645 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000014216 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000070203 UniProtKB/TrEMBL
  ENSRNOP00000070344 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014216 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000082304 UniProtKB/TrEMBL
  ENSRNOT00000082675 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7312891 IMAGE-MGC_LOAD
InterPro ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galectin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galectin_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galectin_CRD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:83781 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105387 IMAGE-MGC_LOAD
NCBI Gene 83781 ENTREZGENE
PANTHER PTHR11346 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11346:SF26 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Gal-bind_lectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lgals3 PhenoGen
PROSITE GALECTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Gal-bind_lectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GLECT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC217069
UniProt A0A0G2JXB1_RAT UniProtKB/TrEMBL
  A0A0G2JXN6_RAT UniProtKB/TrEMBL
  LEG3_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  V5QQP9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-25 Lgals3  galectin 3  Lgals3  lectin, galactoside-binding, soluble, 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-30 Lgals3  lectin, galactoside-binding, soluble, 3  Lgals3  lectin, galactose binding, soluble 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Lgals3  lectin, galactose binding, soluble 3      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains contains a Tyr-Pro-Gly-Pro/Gln-Ala/Thr-Pro/Ala-Pro-Gly-Ala repetive sequence in N-terminal and a domain with homology of that found in the lymphocyte/macrophage receptor for the Fc portion of IgG 68810