Atp5f1e (ATP synthase F1 subunit epsilon) - Rat Genome Database

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Gene: Atp5f1e (ATP synthase F1 subunit epsilon) Rattus norvegicus
Analyze
Symbol: Atp5f1e
Name: ATP synthase F1 subunit epsilon
RGD ID: 621374
Description: Contributes to ATP hydrolysis activity. Predicted to be involved in proton motive force-driven mitochondrial ATP synthesis. Located in mitochondrial inner membrane. Part of mitochondrial proton-transporting ATP synthase complex and proton-transporting ATP synthase complex, catalytic core F(1). Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency nuclear type 3. Orthologous to several human genes including ATP5F1E (ATP synthase F1 subunit epsilon); PARTICIPATES IN electron transport chain pathway; Alzheimer's disease pathway; Huntington's disease pathway; INTERACTS WITH 2,3',4,4',5-Pentachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATP synthase subunit epsilon, mitochondrial; ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit; Atp5e; ATPase subunit epsilon
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83183,677,270 - 183,680,172 (-)NCBIGRCr8
mRatBN7.23163,259,072 - 163,261,974 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3163,260,476 - 163,261,450 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3167,057,815 - 167,060,717 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03175,554,247 - 175,557,149 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03173,298,673 - 173,301,575 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03172,563,105 - 172,566,007 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3172,563,105 - 172,566,010 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03178,609,111 - 178,612,013 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3162,432,456 - 162,435,358 (-)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acetylsalicylic acid  (ISO)
acrylamide  (ISO)
alpha-Zearalanol  (EXP)
amiodarone  (EXP)
amitrole  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
astemizole  (EXP)
atrazine  (ISO)
benzalkonium chloride  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
captan  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
clofibrate  (EXP,ISO)
cocaine  (EXP)
copper(II) sulfate  (ISO)
corosolic acid  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
diquat  (ISO)
disodium selenite  (ISO)
diuron  (EXP,ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
folic acid  (ISO)
folpet  (ISO)
genistein  (ISO)
gentamycin  (EXP)
hydralazine  (ISO)
L-ethionine  (EXP)
lipopolysaccharide  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylparaben  (ISO)
Monobutylphthalate  (ISO)
nicotine  (ISO)
omeprazole  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
perfluoroundecanoic acid  (ISO)
pirinixic acid  (EXP)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
silicon dioxide  (EXP)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
stavudine  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (EXP)
thimerosal  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tolcapone  (EXP)
toluene  (EXP)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. A simple, rapid method for purification of epsilon-subunit, coupling factor 6, subunit d, and subunit e from rat liver H(+)-ATP synthase and determination of the complete amino acid sequence of epsilon-subunit. Higuti T, etal., J Biol Chem. 1992 Nov 5;267(31):22658-61.
4. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
5. Mitochondrial F(0)F(1) ATP synthase. Subunit regions on the F1 motor shielded by F(0), Functional significance, and evidence for an involvement of the unique F(0) subunit F(6). Ko YH, etal., J Biol Chem. 2000 Oct 20;275(42):32931-9.
6. Identification of two proteins associated with mammalian ATP synthase. Meyer B, etal., Mol Cell Proteomics. 2007 Oct;6(10):1690-9. Epub 2007 Jun 17.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. Mitochondrial ATP synthase: dramatic Mg2+-induced alterations in the structure and function of the F1-ATPase moiety. Pedersen PL, etal., Biochemistry. 1987 Dec 29;26(26):8631-7.
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
13. GOA pipeline RGD automated data pipeline
14. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
16. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
17. Cloning, characterization and mapping of the human ATP5E gene, identification of pseudogene ATP5EP1, and definition of the ATP5E motif. Tu Q, etal., Biochem J 2000 Apr 1;347 Pt 1:17-21.
18. PFOS prenatal exposure induce mitochondrial injury and gene expression change in hearts of weaned SD rats. Xia W, etal., Toxicology. 2011 Mar 28;282(1-2):23-9. Epub 2011 Jan 18.
Additional References at PubMed
PMID:12110673   PMID:12865426   PMID:14651853   PMID:15489334   PMID:18614015   PMID:20566710  


Genomics

Comparative Map Data
Atp5f1e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83183,677,270 - 183,680,172 (-)NCBIGRCr8
mRatBN7.23163,259,072 - 163,261,974 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3163,260,476 - 163,261,450 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3167,057,815 - 167,060,717 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03175,554,247 - 175,557,149 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03173,298,673 - 173,301,575 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03172,563,105 - 172,566,007 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3172,563,105 - 172,566,010 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03178,609,111 - 178,612,013 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3162,432,456 - 162,435,358 (-)NCBICelera
Cytogenetic Map3q43NCBI
ATP5F1E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382059,025,475 - 59,032,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2059,025,475 - 59,032,345 (-)EnsemblGRCh38hg38GRCh38
GRCh372057,600,530 - 57,607,390 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362057,037,128 - 57,040,817 (-)NCBINCBI36Build 36hg18NCBI36
Build 342057,037,127 - 57,040,795NCBI
Celera2054,344,154 - 54,347,843 (-)NCBICelera
Cytogenetic Map20q13.32NCBI
HuRef2054,390,650 - 54,394,339 (-)NCBIHuRef
CHM1_12057,505,121 - 57,508,810 (-)NCBICHM1_1
T2T-CHM13v2.02060,808,588 - 60,815,448 (-)NCBIT2T-CHM13v2.0
Atp5f1e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392174,302,868 - 174,305,894 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2174,302,865 - 174,305,898 (-)EnsemblGRCm39 Ensembl
GRCm382174,461,075 - 174,464,101 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2174,461,072 - 174,464,105 (-)EnsemblGRCm38mm10GRCm38
MGSCv372174,286,576 - 174,289,602 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362174,085,123 - 174,107,033 (-)NCBIMGSCv36mm8
Celera2180,421,820 - 180,424,850 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map297.95NCBI
Atp5f1e
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955445563,315 - 567,865 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955445563,642 - 567,865 (+)NCBIChiLan1.0ChiLan1.0
ATP5F1E
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22164,791,968 - 64,795,667 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12064,785,090 - 64,789,412 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02055,379,615 - 55,383,316 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12056,740,739 - 56,744,429 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2056,740,739 - 56,744,431 (-)Ensemblpanpan1.1panPan2
ATP5F1E
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12443,770,646 - 43,772,278 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2443,772,120 - 43,772,680 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2443,016,498 - 43,019,991 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02444,636,529 - 44,640,022 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2444,636,530 - 44,639,979 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12443,740,041 - 43,743,522 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02443,858,740 - 43,862,214 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02444,518,590 - 44,522,082 (-)NCBIUU_Cfam_GSD_1.0
Atp5f1e
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640181,793,162 - 181,796,616 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365301,509,605 - 1,513,175 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365301,509,605 - 1,513,033 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5F1E
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11759,163,085 - 59,174,488 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21766,541,057 - 66,544,900 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP5F1E
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.125,109,902 - 5,113,576 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl25,109,941 - 5,113,566 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605053,161,497 - 53,165,188 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp5f1e
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474125,319,949 - 25,323,769 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474125,319,949 - 25,323,819 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp5f1e
7 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:89
Interacting mature miRNAs:92
Transcripts:ENSRNOT00000071913
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3145925360166177555Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145925360166177555Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3145925360166177555Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3145925360166177555Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3145925360166177555Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3145925360166177555Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3161192952169034231Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3145925360166177555Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat

Markers in Region
BI280365  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21477,863,644 - 77,863,825 (+)MAPPERmRatBN7.2
mRatBN7.23163,259,116 - 163,260,557 (+)MAPPERmRatBN7.2
Rnor_6.03172,563,150 - 172,564,590NCBIRnor6.0
Rnor_6.01483,220,339 - 83,220,519NCBIRnor6.0
Rnor_5.01483,907,181 - 83,907,361UniSTSRnor5.0
Rnor_5.03178,609,156 - 178,610,596UniSTSRnor5.0
RGSC_v3.41483,615,693 - 83,615,873UniSTSRGSC3.4
Celera1476,779,231 - 76,779,411UniSTS
Celera3162,432,501 - 162,433,941UniSTS
RH 3.4 Map14514.17UniSTS
Cytogenetic Map14q21UniSTS
RH141286  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23163,263,089 - 163,263,299 (+)MAPPERmRatBN7.2
Rnor_6.03172,567,123 - 172,567,332NCBIRnor6.0
Rnor_5.03178,613,129 - 178,613,338UniSTSRnor5.0
Celera3162,436,474 - 162,436,683UniSTS
RH 3.4 Map31496.9UniSTS
Cytogenetic Map14q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2 13 3 3 1
Medium 1 30 57 41 19 41 8 8 74 32 40 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_139099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC105515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF010323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000071913   ⟹   ENSRNOP00000067815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3163,260,476 - 163,261,450 (-)Ensembl
Rnor_6.0 Ensembl3172,563,105 - 172,566,010 (-)Ensembl
RefSeq Acc Id: NM_139099   ⟹   NP_620799
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83183,677,270 - 183,680,172 (-)NCBI
mRatBN7.23163,259,072 - 163,261,974 (-)NCBI
Rnor_6.03172,563,105 - 172,566,007 (-)NCBI
Rnor_5.03178,609,111 - 178,612,013 (-)NCBI
Celera3162,432,456 - 162,435,358 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_620799 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB64162 (Get FASTA)   NCBI Sequence Viewer  
  AAH58133 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000067815.2
  ENSRNOP00055000972
  ENSRNOP00060000981
  ENSRNOP00065016928
GenBank Protein P29418 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_620799   ⟸   NM_139099
- UniProtKB: P29418 (UniProtKB/Swiss-Prot),   A6KL35 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000067815   ⟸   ENSRNOT00000071913

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P29418-F1-model_v2 AlphaFold P29418 1-51 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692722
Promoter ID:EPDNEW_R3247
Type:initiation region
Name:Atp5f1e_1
Description:ATP synthase F1 subunit epsilon
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03172,566,040 - 172,566,100EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621374 AgrOrtholog
BioCyc Gene G2FUF-46450 BioCyc
BioCyc Pathway PWY-7980 [ATP biosynthesis] BioCyc
BioCyc Pathway Image PWY-7980 BioCyc
Ensembl Genes ENSRNOG00000049912 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00055000708 UniProtKB/Swiss-Prot
  ENSRNOG00060001240 UniProtKB/Swiss-Prot
  ENSRNOG00065013296 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000071913.3 UniProtKB/TrEMBL
  ENSRNOT00055001217 UniProtKB/Swiss-Prot
  ENSRNOT00060001766 UniProtKB/Swiss-Prot
  ENSRNOT00065021850 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.1620.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6887013 IMAGE-MGC_LOAD
InterPro ATP_synth_F1_esu_mt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATP_synth_F1_esu_sf_mt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:245958 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:72679 IMAGE-MGC_LOAD
NCBI Gene 245958 ENTREZGENE
PANTHER ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12448 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ATP-synt_Eps UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atp5f1e PhenoGen
RatGTEx ENSRNOG00000049912 RatGTEx
  ENSRNOG00055000708 RatGTEx
  ENSRNOG00060001240 RatGTEx
  ENSRNOG00065013296 RatGTEx
Superfamily-SCOP SSF48690 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8L2QYI5_RAT UniProtKB/TrEMBL
  A6KL35 ENTREZGENE, UniProtKB/TrEMBL
  ATP5E_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-30 Atp5f1e  ATP synthase F1 subunit epsilon  Atp5e  ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Atp5e  ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Atp5e  ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit      Symbol and Name status set to provisional 70820 PROVISIONAL