Atp5f1e (ATP synthase F1 subunit epsilon) - Rat Genome Database

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Gene: Atp5f1e (ATP synthase F1 subunit epsilon) Rattus norvegicus
Analyze
Symbol: Atp5f1e
Name: ATP synthase F1 subunit epsilon
RGD ID: 621374
Description: Contributes to ATP hydrolysis activity. Predicted to be involved in proton motive force-driven mitochondrial ATP synthesis. Located in mitochondrial inner membrane. Part of proton-transporting ATP synthase complex. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency nuclear type 3. Orthologous to several human genes including ATP5F1E (ATP synthase F1 subunit epsilon); PARTICIPATES IN electron transport chain pathway; Alzheimer's disease pathway; Huntington's disease pathway; INTERACTS WITH 2,3',4,4',5-Pentachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATP synthase subunit epsilon, mitochondrial; ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit; Atp5e; ATPase subunit epsilon
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83183,677,270 - 183,680,172 (-)NCBIGRCr8
mRatBN7.23163,259,072 - 163,261,974 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3163,260,476 - 163,261,450 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3167,057,815 - 167,060,717 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03175,554,247 - 175,557,149 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03173,298,673 - 173,301,575 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03172,563,105 - 172,566,007 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3172,563,105 - 172,566,010 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03178,609,111 - 178,612,013 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3162,432,456 - 162,435,358 (-)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Atp5f1eRatFluoride Poisoning  IEP 5131501mRNA:decreased expression:heart and mitochondrion (rat)RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Atp5f1eRatamyotrophic lateral sclerosis type 8  ISOATP5F1E (Homo sapiens)8554872ClinVar Annotator: match by term: Amyotrophic lateral sclerosis type 8ClinVarPMID:28492532
Atp5f1eRatmitochondrial complex V (ATP synthase) deficiency nuclear type 3  ISOATP5F1E (Homo sapiens)8554872ClinVar more ...ClinVarPMID:20566710 more ...
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Atp5f1eRatmitochondrial complex V (ATP synthase) deficiency nuclear type 3  ISOATP5F1E (Homo sapiens)7240710 OMIM 

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Atp5f1eRat(+)-dexrazoxane increases expressionISOAtp5f1e (Mus musculus)6480464Dexrazoxane results in increased expression of ATP5F1E mRNACTDPMID:26873546
Atp5f1eRat(S)-nicotine increases splicingISOATP5F1E (Homo sapiens)6480464Nicotine results in increased splicing of ATP5F1E mRNA alternative formCTDPMID:23825647
Atp5f1eRat1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene multiple interactionsISOAtp5f1e (Mus musculus)6480464[2 more ...CTDPMID:25510870
Atp5f1eRat1,2-dimethylhydrazine multiple interactionsISOAtp5f1e (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of ATP5F1E mRNACTDPMID:22206623
Atp5f1eRat17alpha-ethynylestradiol multiple interactionsISOAtp5f1e (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of ATP5F1E mRNACTDPMID:17942748
Atp5f1eRat17alpha-ethynylestradiol increases expressionISOAtp5f1e (Mus musculus)6480464Ethinyl Estradiol results in increased expression of ATP5F1E mRNACTDPMID:17942748
Atp5f1eRat17beta-estradiol decreases expressionISOATP5F1E (Homo sapiens)6480464Estradiol results in decreased expression of ATP5F1E mRNACTDPMID:23019147
Atp5f1eRat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISOAtp5f1e (Mus musculus)6480464[2 more ...CTDPMID:25510870
Atp5f1eRat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISOAtp5f1e (Mus musculus)6480464[2 more ...CTDPMID:25510870
Atp5f1eRat2,3',4,4',5-Pentachlorobiphenyl decreases expressionEXP 64804642 more ...CTDPMID:36450500
Atp5f1eRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of ATP5F1E mRNACTDPMID:32109520 and PMID:34747641
Atp5f1eRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOAtp5f1e (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of ATP5F1E mRNACTDPMID:21570461
Atp5f1eRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOAtp5f1e (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of ATP5F1E mRNACTDPMID:17942748
Atp5f1eRat2,4,4'-trichlorobiphenyl multiple interactionsISOAtp5f1e (Mus musculus)6480464[2 more ...CTDPMID:25510870
Atp5f1eRat2-hydroxypropanoic acid decreases expressionISOATP5F1E (Homo sapiens)6480464Lactic Acid results in decreased expression of ATP5F1E mRNACTDPMID:30851411
Atp5f1eRat4,4'-diaminodiphenylmethane increases expressionISOAtp5f1e (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in increased expression of ATP5F1E mRNACTDPMID:18648102
Atp5f1eRat4,4'-sulfonyldiphenol increases expressionISOAtp5f1e (Mus musculus)6480464bisphenol S results in increased expression of ATP5F1E mRNACTDPMID:39298647
Atp5f1eRat5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole affects expressionEXP 6480464Omeprazole affects the expression of ATP5F1E mRNACTDPMID:19483382
Atp5f1eRat6-propyl-2-thiouracil affects expressionEXP 6480464Propylthiouracil affects the expression of ATP5F1E mRNACTDPMID:19483382
Atp5f1eRat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of ATP5F1E mRNACTDPMID:30047161

1 to 20 of 125 rows

Biological Process

  
Object Symbol
Species
Term
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Reference
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Source
Original Reference(s)
Atp5f1eRatATP biosynthetic process involved_inIEAUniProtKB-KW:KW-00661600115GO_REF:0000043UniProtGO_REF:0000043
Atp5f1eRatmonoatomic ion transport involved_inIEAUniProtKB-KW:KW-04061600115GO_REF:0000043UniProtGO_REF:0000043
Atp5f1eRatproton motive force-driven ATP synthesis involved_inIEAInterPro:IPR006721 and InterPro:IPR0367421600115GO_REF:0000002InterProGO_REF:0000002
Atp5f1eRatproton motive force-driven mitochondrial ATP synthesis involved_inISOATP5F1E (Homo sapiens)1624291 PMID:12110673RGDPMID:12110673
Atp5f1eRatproton motive force-driven mitochondrial ATP synthesis involved_inIBAPANTHER:PTN000278562 and UniProtKB:P563811600115GO_REF:0000033GO_CentralGO_REF:0000033
Atp5f1eRatproton transmembrane transport involved_inIEAUniProtKB-KW:KW-03751600115GO_REF:0000043UniProtGO_REF:0000043

Cellular Component
1 to 14 of 14 rows

  
Object Symbol
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Reference
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Source
Original Reference(s)
Atp5f1eRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Atp5f1eRatmitochondrial inner membrane  IDA 2292224 RGD 
Atp5f1eRatmitochondrial inner membrane located_inIEAUniProtKB-SubCell:SL-01681600115GO_REF:0000044UniProtGO_REF:0000044
Atp5f1eRatmitochondrial inner membrane is_active_inIBAPANTHER:PTN000278562 and Atp5f1e (Rattus norvegicus)1600115GO_REF:0000033GO_CentralGO_REF:0000033
Atp5f1eRatmitochondrial inner membrane located_inIEAUniProtKB-KW:KW-09991600115GO_REF:0000043UniProtGO_REF:0000043
Atp5f1eRatmitochondrial inner membrane located_inIEAInterPro:IPR0067211600115GO_REF:0000002InterProGO_REF:0000002
Atp5f1eRatmitochondrion located_inIEAUniProtKB-SubCell:SL-01731600115GO_REF:0000044UniProtGO_REF:0000044
Atp5f1eRatmitochondrion located_inIEAUniProtKB-KW:KW-04961600115GO_REF:0000043UniProtGO_REF:0000043
Atp5f1eRatproton-transporting ATP synthase complex  IDA 2292224 RGD 
Atp5f1eRatproton-transporting ATP synthase complex part_ofISOATP5F1E (Homo sapiens)1624291 PMID:12110673 and PMID:20566710RGDPMID:12110673 and PMID:20566710
Atp5f1eRatproton-transporting ATP synthase complex part_ofIEAInterPro:IPR0367421600115GO_REF:0000002InterProGO_REF:0000002
Atp5f1eRatproton-transporting ATP synthase complex part_ofIEAUniProtKB-KW:KW-01391600115GO_REF:0000043UniProtGO_REF:0000043
Atp5f1eRatproton-transporting ATP synthase complex part_ofIDA 8553598PMID:17575325UniProt 
Atp5f1eRatproton-transporting ATP synthase complex  IDA 2292427 RGD 
1 to 14 of 14 rows

Molecular Function

  

Imported Annotations - SMPDB

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Atp5f1eRatelectron transport chain pathway  ISOATP5F1E (Homo sapiens)10402751 SMPDBSMP:00355

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Atp5f1eRatAlzheimer's disease pathway   IEA 6907045 KEGGrno:05010
Atp5f1eRatHuntington's disease pathway   IEA 6907045 KEGGrno:05016
Atp5f1eRatoxidative phosphorylation pathway  IEA 6907045 KEGGrno:00190
Atp5f1eRatParkinson's disease pathway   IEA 6907045 KEGGrno:05012

BioCyc Pathways


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#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. A simple, rapid method for purification of epsilon-subunit, coupling factor 6, subunit d, and subunit e from rat liver H(+)-ATP synthase and determination of the complete amino acid sequence of epsilon-subunit. Higuti T, etal., J Biol Chem. 1992 Nov 5;267(31):22658-61.
4. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
5. Mitochondrial F(0)F(1) ATP synthase. Subunit regions on the F1 motor shielded by F(0), Functional significance, and evidence for an involvement of the unique F(0) subunit F(6). Ko YH, etal., J Biol Chem. 2000 Oct 20;275(42):32931-9.
6. Identification of two proteins associated with mammalian ATP synthase. Meyer B, etal., Mol Cell Proteomics. 2007 Oct;6(10):1690-9. Epub 2007 Jun 17.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. Mitochondrial ATP synthase: dramatic Mg2+-induced alterations in the structure and function of the F1-ATPase moiety. Pedersen PL, etal., Biochemistry. 1987 Dec 29;26(26):8631-7.
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
13. GOA pipeline RGD automated data pipeline
14. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
16. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
17. Cloning, characterization and mapping of the human ATP5E gene, identification of pseudogene ATP5EP1, and definition of the ATP5E motif. Tu Q, etal., Biochem J 2000 Apr 1;347 Pt 1:17-21.
18. PFOS prenatal exposure induce mitochondrial injury and gene expression change in hearts of weaned SD rats. Xia W, etal., Toxicology. 2011 Mar 28;282(1-2):23-9. Epub 2011 Jan 18.
1 to 18 of 18 rows
PMID:12110673   PMID:12865426   PMID:14651853   PMID:15489334   PMID:18614015   PMID:20566710   PMID:34800366  



Atp5f1e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83183,677,270 - 183,680,172 (-)NCBIGRCr8
mRatBN7.23163,259,072 - 163,261,974 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3163,260,476 - 163,261,450 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3167,057,815 - 167,060,717 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03175,554,247 - 175,557,149 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03173,298,673 - 173,301,575 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03172,563,105 - 172,566,007 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3172,563,105 - 172,566,010 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03178,609,111 - 178,612,013 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3162,432,456 - 162,435,358 (-)NCBICelera
Cytogenetic Map3q43NCBI
ATP5F1E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382059,025,475 - 59,032,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2059,025,475 - 59,032,345 (-)EnsemblGRCh38hg38GRCh38
GRCh372057,600,530 - 57,607,390 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362057,037,128 - 57,040,817 (-)NCBINCBI36Build 36hg18NCBI36
Build 342057,037,127 - 57,040,795NCBI
Celera2054,344,154 - 54,347,843 (-)NCBICelera
Cytogenetic Map20q13.32NCBI
HuRef2054,390,650 - 54,394,339 (-)NCBIHuRef
CHM1_12057,505,121 - 57,508,810 (-)NCBICHM1_1
T2T-CHM13v2.02060,808,588 - 60,815,448 (-)NCBIT2T-CHM13v2.0
Atp5f1e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392174,302,868 - 174,305,894 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2174,302,865 - 174,305,898 (-)EnsemblGRCm39 Ensembl
GRCm382174,461,075 - 174,464,101 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2174,461,072 - 174,464,105 (-)EnsemblGRCm38mm10GRCm38
MGSCv372174,286,576 - 174,289,602 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362174,085,123 - 174,107,033 (-)NCBIMGSCv36mm8
Celera2180,421,820 - 180,424,850 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map297.95NCBI
Atp5f1e
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955445563,315 - 567,865 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955445563,642 - 567,865 (+)NCBIChiLan1.0ChiLan1.0
ATP5F1E
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22164,791,968 - 64,795,667 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12064,785,090 - 64,789,412 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02055,379,615 - 55,383,316 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12056,740,739 - 56,744,429 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2056,740,739 - 56,744,431 (-)Ensemblpanpan1.1panPan2
ATP5F1E
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12443,770,646 - 43,772,278 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2443,772,120 - 43,772,680 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2443,016,498 - 43,019,991 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02444,636,529 - 44,640,022 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2444,636,530 - 44,639,979 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12443,740,041 - 43,743,522 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02443,858,740 - 43,862,214 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02444,518,590 - 44,522,082 (-)NCBIUU_Cfam_GSD_1.0
Atp5f1e
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640181,793,162 - 181,796,616 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365301,509,605 - 1,513,175 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365301,509,605 - 1,513,033 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5F1E
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11759,163,085 - 59,174,488 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21766,541,057 - 66,544,900 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP5F1E
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.125,109,902 - 5,113,576 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl25,109,941 - 5,113,566 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605053,161,497 - 53,165,188 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp5f1e
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474125,319,949 - 25,323,769 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474125,319,949 - 25,323,819 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Atp5f1e
7 total Variants

Predicted Target Of
Summary Value
Count of predictions:101
Count of miRNA genes:89
Interacting mature miRNAs:92
Transcripts:ENSRNOT00000071913
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 27 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3145925360166177555Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145925360166177555Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3145925360166177555Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3145925360166177555Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3145925360166177555Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3145925360166177555Rat

1 to 10 of 27 rows
BI280365  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21477,863,644 - 77,863,825 (+)MAPPERmRatBN7.2
mRatBN7.23163,259,116 - 163,260,557 (+)MAPPERmRatBN7.2
Rnor_6.03172,563,150 - 172,564,590NCBIRnor6.0
Rnor_6.01483,220,339 - 83,220,519NCBIRnor6.0
Rnor_5.01483,907,181 - 83,907,361UniSTSRnor5.0
Rnor_5.03178,609,156 - 178,610,596UniSTSRnor5.0
RGSC_v3.41483,615,693 - 83,615,873UniSTSRGSC3.4
Celera1476,779,231 - 76,779,411UniSTS
Celera3162,432,501 - 162,433,941UniSTS
RH 3.4 Map14514.17UniSTS
Cytogenetic Map14q21UniSTS
RH141286  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23163,263,089 - 163,263,299 (+)MAPPERmRatBN7.2
Rnor_6.03172,567,123 - 172,567,332NCBIRnor6.0
Rnor_5.03178,613,129 - 178,613,338UniSTSRnor5.0
Celera3162,436,474 - 162,436,683UniSTS
RH 3.4 Map31496.9UniSTS
Cytogenetic Map14q21UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 30 of 34 rows
RefSeq Transcripts NM_139099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC105515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF010323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 34 rows

Ensembl Acc Id: ENSRNOT00000071913   ⟹   ENSRNOP00000067815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3163,260,476 - 163,261,450 (-)Ensembl
Rnor_6.0 Ensembl3172,563,105 - 172,566,010 (-)Ensembl
RefSeq Acc Id: NM_139099   ⟹   NP_620799
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83183,677,270 - 183,680,172 (-)NCBI
mRatBN7.23163,259,072 - 163,261,974 (-)NCBI
Rnor_6.03172,563,105 - 172,566,007 (-)NCBI
Rnor_5.03178,609,111 - 178,612,013 (-)NCBI
Celera3162,432,456 - 162,435,358 (-)NCBI
Sequence:
Protein RefSeqs NP_620799 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB64162 (Get FASTA)   NCBI Sequence Viewer  
  AAH58133 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000067815
GenBank Protein P29418 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_620799   ⟸   NM_139099
- UniProtKB: P29418 (UniProtKB/Swiss-Prot),   A6KL35 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000067815   ⟸   ENSRNOT00000071913

Name Modeler Protein Id AA Range Protein Structure
AF-P29418-F1-model_v2 AlphaFold P29418 1-51 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13692722
Promoter ID:EPDNEW_R3247
Type:initiation region
Name:Atp5f1e_1
Description:ATP synthase F1 subunit epsilon
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03172,566,040 - 172,566,100EPDNEW


1 to 21 of 21 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-46450 BioCyc
BioCyc Pathway PWY-7980 [ATP biosynthesis] BioCyc
BioCyc Pathway Image PWY-7980 BioCyc
Ensembl Genes ENSRNOG00000049912 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000071913 ENTREZGENE
Gene3D-CATH 1.10.1620.20 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6887013 IMAGE-MGC_LOAD
InterPro ATP_synth_F1_esu_mt UniProtKB/Swiss-Prot
  ATP_synth_F1_esu_sf_mt UniProtKB/Swiss-Prot
KEGG Report rno:245958 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72679 IMAGE-MGC_LOAD
NCBI Gene 245958 ENTREZGENE
PANTHER ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UniProtKB/Swiss-Prot
  PTHR12448 UniProtKB/Swiss-Prot
Pfam ATP-synt_Eps UniProtKB/Swiss-Prot
PhenoGen Atp5f1e PhenoGen
RatGTEx ENSRNOG00000049912 RatGTEx
Superfamily-SCOP SSF48690 UniProtKB/Swiss-Prot
UniProt A0A8L2QYI5_RAT UniProtKB/TrEMBL
  A6KL35 ENTREZGENE, UniProtKB/TrEMBL
  ATP5E_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 21 of 21 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-30 Atp5f1e  ATP synthase F1 subunit epsilon  Atp5e  ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Atp5e  ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Atp5e  ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit      Symbol and Name status set to provisional 70820 PROVISIONAL