ATP5F1E (ATP synthase F1 subunit epsilon) - Rat Genome Database

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Gene: ATP5F1E (ATP synthase F1 subunit epsilon) Pan paniscus
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Symbol: ATP5F1E
Name: ATP synthase F1 subunit epsilon
RGD ID: 11861177
Description: ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); protein-containing complex binding (ortholog); proton-transporting ATP synthase activity, rotational mechanism (ortholog); INVOLVED IN ATP biosynthetic process (inferred); proton motive force-driven ATP synthesis (inferred); proton motive force-driven mitochondrial ATP synthesis (inferred); PARTICIPATES IN electron transport chain pathway; ASSOCIATED WITH amyotrophic lateral sclerosis type 8 (ortholog); Fluoride Poisoning (ortholog); mitochondrial complex V (ATP synthase) deficiency nuclear type 3 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); proton-transporting ATP synthase complex, catalytic core F(1) (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP synthase subunit epsilon, mitochondrial; ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit; ATP5E; collagen alpha-2(I) chain
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22164,791,968 - 64,795,667 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12064,785,090 - 64,789,412 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02055,379,615 - 55,383,316 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12056,740,739 - 56,744,429 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2056,740,739 - 56,744,431 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP5F1E
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22164,791,968 - 64,795,667 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12064,785,090 - 64,789,412 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02055,379,615 - 55,383,316 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12056,740,739 - 56,744,429 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2056,740,739 - 56,744,431 (-)Ensemblpanpan1.1panPan2
ATP5F1E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382059,025,475 - 59,032,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2059,025,475 - 59,032,345 (-)EnsemblGRCh38hg38GRCh38
GRCh372057,600,530 - 57,607,390 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362057,037,128 - 57,040,817 (-)NCBINCBI36Build 36hg18NCBI36
Build 342057,037,127 - 57,040,795NCBI
Celera2054,344,154 - 54,347,843 (-)NCBICelera
Cytogenetic Map20q13.32NCBI
HuRef2054,390,650 - 54,394,339 (-)NCBIHuRef
CHM1_12057,505,121 - 57,508,810 (-)NCBICHM1_1
T2T-CHM13v2.02060,808,588 - 60,815,448 (-)NCBIT2T-CHM13v2.0
Atp5f1e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392174,302,868 - 174,305,894 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2174,302,865 - 174,305,898 (-)EnsemblGRCm39 Ensembl
GRCm382174,461,075 - 174,464,101 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2174,461,072 - 174,464,105 (-)EnsemblGRCm38mm10GRCm38
MGSCv372174,286,576 - 174,289,602 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362174,085,123 - 174,107,033 (-)NCBIMGSCv36mm8
Celera2180,421,820 - 180,424,850 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map297.95NCBI
Atp5f1e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83183,677,270 - 183,680,172 (-)NCBIGRCr8
mRatBN7.23163,259,072 - 163,261,974 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3163,260,476 - 163,261,450 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3167,057,815 - 167,060,717 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03175,554,247 - 175,557,149 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03173,298,673 - 173,301,575 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03172,563,105 - 172,566,007 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3172,563,105 - 172,566,010 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03178,609,111 - 178,612,013 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3162,432,456 - 162,435,358 (-)NCBICelera
Cytogenetic Map3q43NCBI
Atp5f1e
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955445563,315 - 567,865 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955445563,642 - 567,865 (+)NCBIChiLan1.0ChiLan1.0
ATP5F1E
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12443,770,646 - 43,772,278 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2443,772,120 - 43,772,680 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2443,016,498 - 43,019,991 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02444,636,529 - 44,640,022 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2444,636,530 - 44,639,979 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12443,740,041 - 43,743,522 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02443,858,740 - 43,862,214 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02444,518,590 - 44,522,082 (-)NCBIUU_Cfam_GSD_1.0
Atp5f1e
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640181,793,162 - 181,796,616 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365301,509,605 - 1,513,175 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365301,509,605 - 1,513,033 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5F1E
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11759,163,085 - 59,174,488 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21766,541,057 - 66,544,900 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP5F1E
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.125,109,902 - 5,113,576 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl25,109,941 - 5,113,566 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605053,161,497 - 53,165,188 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp5f1e
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474125,319,949 - 25,323,769 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474125,319,949 - 25,323,819 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003810805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000019079   ⟹   ENSPPAP00000004102
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2056,740,739 - 56,744,431 (-)Ensembl
RefSeq Acc Id: XM_003810805   ⟹   XP_003810853
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22164,791,968 - 64,795,667 (-)NCBI
NHGRI_mPanPan12064,785,090 - 64,789,412 (-)NCBI
Mhudiblu_PPA_v02055,379,615 - 55,383,316 (-)NCBI
PanPan1.12056,740,739 - 56,744,429 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003810853 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000004102.1
RefSeq Acc Id: XP_003810853   ⟸   XM_003810805
- UniProtKB: A0A2R8ZJS5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000004102   ⟸   ENSPPAT00000019079


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000017445 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000019079.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1620.20 UniProtKB/TrEMBL
InterPro ATP_synth_F1_esu_mt UniProtKB/TrEMBL
  ATP_synth_F1_esu_sf_mt UniProtKB/TrEMBL
KEGG Report pps:100979899 UniProtKB/TrEMBL
NCBI Gene ATP5E ENTREZGENE
PANTHER ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR12448 UniProtKB/TrEMBL
Pfam ATP-synt_Eps UniProtKB/TrEMBL
Superfamily-SCOP SSF48690 UniProtKB/TrEMBL
UniProt A0A2R8ZJS5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-28 ATP5F1E  ATP synthase F1 subunit epsilon  ATP5E  ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit  Symbol and/or name change 5135510 APPROVED