Atp5f1e (ATP synthase F1 subunit epsilon) - Rat Genome Database

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Gene: Atp5f1e (ATP synthase F1 subunit epsilon) Chinchilla lanigera
Analyze
Symbol: Atp5f1e
Name: ATP synthase F1 subunit epsilon
RGD ID: 8772718
Description: ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); protein-containing complex binding (ortholog); proton-transporting ATP synthase activity, rotational mechanism (ortholog); INVOLVED IN proton motive force-driven mitochondrial ATP synthesis (ortholog); PARTICIPATES IN electron transport chain pathway; ASSOCIATED WITH Fluoride Poisoning (ortholog); mitochondrial complex V (ATP synthase) deficiency nuclear type 3 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial proton-transporting ATP synthase complex (ortholog); mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP synthase subunit epsilon, mitochondrial; ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit; Atp5e
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955445563,315 - 567,865 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955445563,642 - 567,865 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp5f1e
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955445563,315 - 567,865 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955445563,642 - 567,865 (+)NCBIChiLan1.0ChiLan1.0
ATP5F1E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382059,025,475 - 59,032,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2059,025,475 - 59,032,345 (-)EnsemblGRCh38hg38GRCh38
GRCh372057,600,530 - 57,607,390 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362057,037,128 - 57,040,817 (-)NCBINCBI36Build 36hg18NCBI36
Build 342057,037,127 - 57,040,795NCBI
Celera2054,344,154 - 54,347,843 (-)NCBICelera
Cytogenetic Map20q13.32NCBI
HuRef2054,390,650 - 54,394,339 (-)NCBIHuRef
CHM1_12057,505,121 - 57,508,810 (-)NCBICHM1_1
T2T-CHM13v2.02060,808,588 - 60,815,448 (-)NCBIT2T-CHM13v2.0
Atp5f1e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392174,302,868 - 174,305,894 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2174,302,865 - 174,305,898 (-)EnsemblGRCm39 Ensembl
GRCm382174,461,075 - 174,464,101 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2174,461,072 - 174,464,105 (-)EnsemblGRCm38mm10GRCm38
MGSCv372174,286,576 - 174,289,602 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362174,085,123 - 174,107,033 (-)NCBIMGSCv36mm8
Celera2180,421,820 - 180,424,850 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map297.95NCBI
Atp5f1e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83183,677,270 - 183,680,172 (-)NCBIGRCr8
mRatBN7.23163,259,072 - 163,261,974 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3163,260,476 - 163,261,450 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3167,057,815 - 167,060,717 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03175,554,247 - 175,557,149 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03173,298,673 - 173,301,575 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03172,563,105 - 172,566,007 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3172,563,105 - 172,566,010 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03178,609,111 - 178,612,013 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3162,432,456 - 162,435,358 (-)NCBICelera
Cytogenetic Map3q43NCBI
ATP5F1E
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22164,791,968 - 64,795,667 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12064,785,090 - 64,789,412 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02055,379,615 - 55,383,316 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12056,740,739 - 56,744,429 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2056,740,739 - 56,744,431 (-)Ensemblpanpan1.1panPan2
ATP5F1E
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12443,770,646 - 43,772,278 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2443,772,120 - 43,772,680 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2443,016,498 - 43,019,991 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02444,636,529 - 44,640,022 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2444,636,530 - 44,639,979 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12443,740,041 - 43,743,522 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02443,858,740 - 43,862,214 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02444,518,590 - 44,522,082 (-)NCBIUU_Cfam_GSD_1.0
Atp5f1e
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640181,793,162 - 181,796,616 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365301,509,605 - 1,513,175 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365301,509,605 - 1,513,033 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5F1E
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11759,163,085 - 59,174,488 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21766,541,057 - 66,544,900 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP5F1E
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.125,109,902 - 5,113,576 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl25,109,941 - 5,113,566 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605053,161,497 - 53,165,188 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp5f1e
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474125,319,949 - 25,323,769 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474125,319,949 - 25,323,819 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011807   ⟹   ENSCLAP00000011669
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955445563,315 - 567,865 (+)Ensembl
RefSeq Acc Id: XM_005392211   ⟹   XP_005392268
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955445563,642 - 567,865 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005392268 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011669
  ENSCLAP00000011669.1
Reference Protein Sequences
RefSeq Acc Id: XP_005392268   ⟸   XM_005392211
- UniProtKB: A0A8C2VBQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000011669   ⟸   ENSCLAT00000011807


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008048 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011807 ENTREZGENE
  ENSCLAT00000011807.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1620.20 UniProtKB/TrEMBL
InterPro ATP_synth_F1_esu_mt UniProtKB/TrEMBL
  ATP_synth_F1_esu_sf_mt UniProtKB/TrEMBL
NCBI Gene Atp5e ENTREZGENE
PANTHER ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR12448 UniProtKB/TrEMBL
Pfam ATP-synt_Eps UniProtKB/TrEMBL
Superfamily-SCOP SSF48690 UniProtKB/TrEMBL
UniProt A0A8C2VBQ3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-28 Atp5f1e  ATP synthase F1 subunit epsilon  Atp5e  ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit  Symbol and/or name change 5135510 APPROVED