Symbol:
Rps29 (Ensembl: Rps29-ps15)
Name:
ribosomal protein S29 (Ensembl:ribosomal protein S29, pseudogene 15)
RGD ID:
3596
Description:
Predicted to enable zinc ion binding activity. Predicted to be a structural constituent of ribosome. Involved in positive regulation of apoptotic process. Part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 13. Orthologous to human RPS29 (ribosomal protein S29); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
40S ribosomal protein S29; small ribosomal subunit protein uS14
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
RPS29 (ribosomal protein S29) HGNC
Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, Panther, Treefam
Mus musculus (house mouse):
Rps29 (ribosomal protein S29) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Rps29 (ribosomal protein S29) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
RPS29 (ribosomal protein S29) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
RPS29 (ribosomal protein S29) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Rps29 (ribosomal protein S29) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
RPS29 (ribosomal protein S29) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
RPS29 (ribosomal protein S29) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Rps29 (ribosomal protein S29) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Alliance orthologs 3
Mus musculus (house mouse):
Rps29 (ribosomal protein S29)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Homo sapiens (human):
RPS29 (ribosomal protein S29)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
rps29 (ribosomal protein S29)
Alliance
DIOPT (Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Caenorhabditis elegans (roundworm):
rps-29
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):
RPS29A
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):
RPS29B
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Drosophila melanogaster (fruit fly):
RpS29
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):
rps29
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Related Pseudogenes:
Rps29-ps15
Rps29-ps16
Rps29-ps17
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 6 93,371,293 - 93,372,731 (-) NCBI GRCr8 mRatBN7.2 6 87,635,229 - 87,636,627 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 13 85,284,636 - 85,284,968 (+) Ensembl mRatBN7.2 Ensembl mRatBN7.2 Ensembl 6 87,635,230 - 87,636,636 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 6 88,035,099 - 88,036,475 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 6 88,334,529 - 88,335,905 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 6 87,774,278 - 87,775,654 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 6 91,455,333 - 91,456,709 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 6 91,455,333 - 91,456,696 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 7 76,980,040 - 76,980,210 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 3 147,490,496 - 147,490,666 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 6 100,914,106 - 100,915,482 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 6 91,115,709 - 91,117,085 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 6 91,119,164 - 91,120,541 (-) NCBI Celera 6 86,134,478 - 86,135,854 (-) NCBI Celera Cytogenetic Map 6 q24 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Rps29 Rat 1,2-dimethylhydrazine multiple interactions ISO RGD:11245 6480464 [1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of RPS29 mRNA CTD PMID:22206623 Rps29 Rat 17beta-estradiol decreases expression ISO RGD:734258 6480464 Estradiol results in decreased expression of RPS29 mRNA CTD PMID:23019147 Rps29 Rat 17beta-estradiol decreases expression ISO RGD:11245 6480464 Estradiol results in decreased expression of RPS29 mRNA CTD PMID:39298647 Rps29 Rat 2,2',4,4'-Tetrabromodiphenyl ether affects expression ISO RGD:11245 6480464 2,2',4,4'-tetrabromodiphenyl ether affects the expression of RPS29 mRNA CTD PMID:30294300 Rps29 Rat 2,3,7,8-tetrachlorodibenzodioxine increases expression EXP 6480464 Tetrachlorodibenzodioxin results in increased expression of RPS29 mRNA CTD PMID:33387578 Rps29 Rat 3,4-methylenedioxymethamphetamine decreases expression ISO RGD:11245 6480464 N-Methyl-3,4-methylenedioxyamphetamine results in decreased expression of RPS29 mRNA CTD PMID:20188158 Rps29 Rat 4,4'-diaminodiphenylmethane decreases expression ISO RGD:11245 6480464 4,4'-diaminodiphenylmethane results in decreased expression of RPS29 mRNA CTD PMID:18648102 Rps29 Rat 4,4'-sulfonyldiphenol decreases expression ISO RGD:11245 6480464 bisphenol S results in decreased expression of RPS29 mRNA CTD PMID:39298647 Rps29 Rat 4,4'-sulfonyldiphenol multiple interactions EXP 6480464 [bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of more ... CTD PMID:36041667 Rps29 Rat 6-propyl-2-thiouracil increases expression EXP 6480464 Propylthiouracil results in increased expression of RPS29 mRNA CTD PMID:36843608 Rps29 Rat all-trans-retinoic acid multiple interactions ISO RGD:11245 6480464 [bisphenol A co-treated with Tretinoin] results in decreased expression of RPS29 mRNA CTD PMID:30951980 Rps29 Rat Allylamine increases expression EXP 6480464 Allylamine results in increased expression of RPS29 mRNA CTD PMID:15910882 Rps29 Rat ammonium chloride affects expression EXP 6480464 Ammonium Chloride affects the expression of RPS29 mRNA CTD PMID:16483693 Rps29 Rat aristolochic acid A decreases expression ISO RGD:734258 6480464 aristolochic acid I results in decreased expression of RPS29 mRNA CTD PMID:33212167 Rps29 Rat arsane multiple interactions ISO RGD:734258 6480464 [sodium arsenate results in increased abundance of Arsenic] which results in decreased expression of RPS29 more ... CTD PMID:32525701 Rps29 Rat arsenic atom multiple interactions ISO RGD:734258 6480464 [sodium arsenate results in increased abundance of Arsenic] which results in decreased expression of RPS29 more ... CTD PMID:32525701 Rps29 Rat arsenite(3-) multiple interactions ISO RGD:734258 6480464 arsenite promotes the reaction [G3BP1 protein binds to RPS29 mRNA] CTD PMID:32406909 Rps29 Rat arsenous acid decreases expression ISO RGD:734258 6480464 Arsenic Trioxide results in decreased expression of RPS29 protein CTD PMID:25419056 Rps29 Rat atrazine increases expression ISO RGD:734258 6480464 Atrazine results in increased expression of RPS29 mRNA CTD PMID:22378314 Rps29 Rat benzo[a]pyrene increases methylation ISO RGD:734258 6480464 Benzo(a)pyrene results in increased methylation of RPS29 promoter CTD PMID:27901495 Rps29 Rat beta-lapachone increases expression ISO RGD:734258 6480464 beta-lapachone results in increased expression of RPS29 mRNA CTD PMID:38218311 Rps29 Rat bis(2-ethylhexyl) phthalate decreases expression ISO RGD:11245 6480464 Diethylhexyl Phthalate results in decreased expression of RPS29 mRNA CTD PMID:33754040 Rps29 Rat bisphenol A increases expression EXP 6480464 bisphenol A results in increased expression of RPS29 mRNA CTD PMID:25181051|PMID:38750585 Rps29 Rat bisphenol A multiple interactions EXP 6480464 [bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of more ... CTD PMID:36041667 Rps29 Rat bisphenol A increases expression ISO RGD:11245 6480464 bisphenol A results in increased expression of RPS29 mRNA CTD PMID:33221593 Rps29 Rat bisphenol A decreases expression ISO RGD:734258 6480464 bisphenol A results in decreased expression of RPS29 mRNA; bisphenol A results in decreased expression more ... CTD PMID:33376534|PMID:38568856 Rps29 Rat bisphenol A decreases expression ISO RGD:11245 6480464 bisphenol A results in decreased expression of RPS29 mRNA CTD PMID:34585602|PMID:35598803 Rps29 Rat bisphenol A affects expression ISO RGD:734258 6480464 bisphenol A affects the expression of RPS29 mRNA CTD PMID:30903817 Rps29 Rat bisphenol A affects expression EXP 6480464 bisphenol A affects the expression of RPS29 mRNA CTD PMID:30903817|PMID:32145629 Rps29 Rat bisphenol A multiple interactions ISO RGD:11245 6480464 [bisphenol A co-treated with Tretinoin] results in decreased expression of RPS29 mRNA CTD PMID:30951980 Rps29 Rat bisphenol F multiple interactions EXP 6480464 [bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of more ... CTD PMID:36041667 Rps29 Rat cadmium dichloride increases expression ISO RGD:734258 6480464 Cadmium Chloride results in increased expression of RPS29 mRNA CTD PMID:38568856 Rps29 Rat chlorpyrifos increases expression ISO RGD:11245 6480464 Chlorpyrifos results in increased expression of RPS29 mRNA CTD PMID:37019170 Rps29 Rat cisplatin increases expression ISO RGD:734258 6480464 Cisplatin results in increased expression of RPS29 mRNA CTD PMID:27392435 Rps29 Rat clofibric acid multiple interactions EXP 6480464 [Diethylnitrosamine co-treated with Clofibric Acid] affects the expression of RPS29 mRNA CTD PMID:17602206 Rps29 Rat clothianidin increases expression ISO RGD:734258 6480464 clothianidin results in increased expression of RPS29 mRNA CTD PMID:31626844 Rps29 Rat copper(II) sulfate increases expression ISO RGD:734258 6480464 Copper Sulfate results in increased expression of RPS29 mRNA CTD PMID:20599845 Rps29 Rat cypermethrin decreases expression EXP 6480464 cypermethrin results in decreased expression of RPS29 mRNA CTD PMID:22528246 Rps29 Rat deoxynivalenol decreases expression ISO RGD:734258 6480464 deoxynivalenol results in decreased expression of RPS29 mRNA CTD PMID:31863870 Rps29 Rat dextran sulfate increases expression ISO RGD:11245 6480464 Dextran Sulfate results in increased expression of RPS29 mRNA CTD PMID:35093514 Rps29 Rat diarsenic trioxide decreases expression ISO RGD:734258 6480464 Arsenic Trioxide results in decreased expression of RPS29 protein CTD PMID:25419056 Rps29 Rat dibutyl phthalate increases expression EXP 6480464 Dibutyl Phthalate results in increased expression of RPS29 mRNA CTD PMID:17379624 Rps29 Rat dichlorine multiple interactions EXP 6480464 [Ozone co-treated with Chlorine] results in decreased expression of RPS29 mRNA CTD PMID:18636392 Rps29 Rat dicrotophos decreases expression ISO RGD:734258 6480464 dicrotophos results in decreased expression of RPS29 mRNA CTD PMID:28302478 Rps29 Rat diuron decreases expression EXP 6480464 Diuron results in decreased expression of RPS29 mRNA CTD PMID:21551480 Rps29 Rat elemental selenium decreases expression ISO RGD:734258 6480464 Selenium results in decreased expression of RPS29 mRNA CTD PMID:19244175 Rps29 Rat enzyme inhibitor multiple interactions ISO RGD:734258 6480464 [Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation more ... CTD PMID:23301498 Rps29 Rat epoxiconazole increases expression ISO RGD:11245 6480464 epoxiconazole results in increased expression of RPS29 mRNA CTD PMID:35436446 Rps29 Rat fenthion increases expression ISO RGD:11245 6480464 Fenthion results in increased expression of RPS29 mRNA CTD PMID:34813904 Rps29 Rat folic acid multiple interactions ISO RGD:11245 6480464 [1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of RPS29 mRNA CTD PMID:22206623 Rps29 Rat FR900359 increases phosphorylation ISO RGD:734258 6480464 FR900359 results in increased phosphorylation of RPS29 protein CTD PMID:37730182 Rps29 Rat genistein decreases expression ISO RGD:734258 6480464 Genistein results in decreased expression of RPS29 protein CTD PMID:20884965 Rps29 Rat genistein multiple interactions ISO RGD:734258 6480464 ESR1 promotes the reaction [Genistein results in decreased expression of RPS29 protein] CTD PMID:20884965 Rps29 Rat ivermectin decreases expression ISO RGD:734258 6480464 Ivermectin results in decreased expression of RPS29 protein CTD PMID:32959892 Rps29 Rat L-ascorbic acid increases expression EXP 6480464 Ascorbic Acid results in increased expression of RPS29 mRNA CTD PMID:15372504 Rps29 Rat Mesaconitine increases expression EXP 6480464 mesaconitine results in increased expression of RPS29 protein CTD PMID:37182599 Rps29 Rat methidathion increases expression ISO RGD:11245 6480464 methidathion results in increased expression of RPS29 mRNA CTD PMID:34813904 Rps29 Rat methylparaben decreases expression ISO RGD:734258 6480464 methylparaben results in decreased expression of RPS29 mRNA CTD PMID:38568856 Rps29 Rat monosodium L-glutamate increases expression EXP 6480464 Sodium Glutamate results in increased expression of RPS29 mRNA CTD PMID:20928830 Rps29 Rat N-methyl-4-phenylpyridinium decreases expression ISO RGD:11245 6480464 1-Methyl-4-phenylpyridinium results in decreased expression of RPS29 protein CTD PMID:26558463 Rps29 Rat N-nitrosodiethylamine multiple interactions EXP 6480464 [Diethylnitrosamine co-treated with Clofibric Acid] affects the expression of RPS29 mRNA CTD PMID:17602206 Rps29 Rat ozone multiple interactions EXP 6480464 [Ozone co-treated with Chlorine] results in decreased expression of RPS29 mRNA CTD PMID:18636392 Rps29 Rat palbociclib increases expression ISO RGD:734258 6480464 palbociclib results in increased expression of RPS29 mRNA CTD PMID:22869556 Rps29 Rat paracetamol affects expression ISO RGD:11245 6480464 Acetaminophen affects the expression of RPS29 mRNA CTD PMID:17562736 Rps29 Rat parathion increases expression ISO RGD:11245 6480464 Parathion results in increased expression of RPS29 mRNA CTD PMID:34813904 Rps29 Rat perfluorodecanoic acid decreases expression ISO RGD:734258 6480464 perfluorodecanoic acid results in decreased expression of RPS29 mRNA CTD PMID:38568856 Rps29 Rat perfluorononanoic acid decreases expression ISO RGD:734258 6480464 perfluoro-n-nonanoic acid results in decreased expression of RPS29 mRNA CTD PMID:38568856 Rps29 Rat phenanthrene decreases expression ISO RGD:734258 6480464 phenanthrene results in decreased expression of RPS29 mRNA CTD PMID:38568856 Rps29 Rat PhIP increases expression EXP 6480464 2-amino-1-methyl-6-phenylimidazo(4,5-b)pyridine results in increased expression of RPS29 mRNA CTD PMID:15215175 Rps29 Rat propanal decreases expression ISO RGD:734258 6480464 propionaldehyde results in decreased expression of RPS29 mRNA CTD PMID:26079696 Rps29 Rat Propiverine affects binding EXP 6480464 propiverine binds to RPS29 protein CTD PMID:29273565 Rps29 Rat SB 431542 multiple interactions ISO RGD:734258 6480464 [LDN 193189 co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide co-treated with FGF2 protein] results in decreased expression of RPS29 more ... CTD PMID:37664457 Rps29 Rat selenium atom decreases expression ISO RGD:734258 6480464 Selenium results in decreased expression of RPS29 mRNA CTD PMID:19244175 Rps29 Rat silver atom decreases expression ISO RGD:11245 6480464 Silver results in decreased expression of RPS29 mRNA CTD PMID:27131904 Rps29 Rat silver(0) decreases expression ISO RGD:11245 6480464 Silver results in decreased expression of RPS29 mRNA CTD PMID:27131904 Rps29 Rat sodium arsenate multiple interactions ISO RGD:734258 6480464 [sodium arsenate results in increased abundance of Arsenic] which results in decreased expression of RPS29 more ... CTD PMID:32525701 Rps29 Rat sodium arsenite decreases expression ISO RGD:734258 6480464 sodium arsenite results in decreased expression of RPS29 mRNA; sodium arsenite results in decreased expression more ... CTD PMID:30528433|PMID:38568856 Rps29 Rat sunitinib increases expression ISO RGD:734258 6480464 Sunitinib results in increased expression of RPS29 mRNA CTD PMID:31533062 Rps29 Rat tetrachloromethane affects expression EXP 6480464 Carbon Tetrachloride affects the expression of RPS29 mRNA CTD PMID:12734012|PMID:15963342|PMID:16239168 Rps29 Rat tetrachloromethane decreases expression EXP 6480464 Carbon Tetrachloride results in decreased expression of RPS29 mRNA CTD PMID:33387578 Rps29 Rat titanium dioxide decreases methylation ISO RGD:11245 6480464 titanium dioxide results in decreased methylation of RPS29 promoter alternative form CTD PMID:35295148 Rps29 Rat triphenyl phosphate affects expression ISO RGD:734258 6480464 triphenyl phosphate affects the expression of RPS29 mRNA CTD PMID:37042841 Rps29 Rat tris(2-butoxyethyl) phosphate increases expression ISO RGD:734258 6480464 tris(2-butoxyethyl) phosphate results in increased expression of RPS29 mRNA CTD PMID:29024780 Rps29 Rat tungsten increases expression ISO RGD:11245 6480464 Tungsten results in increased expression of RPS29 mRNA CTD PMID:30912803
1,2-dimethylhydrazine (ISO) 17beta-estradiol (ISO) 2,2',4,4'-Tetrabromodiphenyl ether (ISO) 2,3,7,8-tetrachlorodibenzodioxine (EXP) 3,4-methylenedioxymethamphetamine (ISO) 4,4'-diaminodiphenylmethane (ISO) 4,4'-sulfonyldiphenol (EXP,ISO) 6-propyl-2-thiouracil (EXP) all-trans-retinoic acid (ISO) Allylamine (EXP) ammonium chloride (EXP) aristolochic acid A (ISO) arsane (ISO) arsenic atom (ISO) arsenite(3-) (ISO) arsenous acid (ISO) atrazine (ISO) benzo[a]pyrene (ISO) beta-lapachone (ISO) bis(2-ethylhexyl) phthalate (ISO) bisphenol A (EXP,ISO) bisphenol F (EXP) cadmium dichloride (ISO) chlorpyrifos (ISO) cisplatin (ISO) clofibric acid (EXP) clothianidin (ISO) copper(II) sulfate (ISO) cypermethrin (EXP) deoxynivalenol (ISO) dextran sulfate (ISO) diarsenic trioxide (ISO) dibutyl phthalate (EXP) dichlorine (EXP) dicrotophos (ISO) diuron (EXP) elemental selenium (ISO) enzyme inhibitor (ISO) epoxiconazole (ISO) fenthion (ISO) folic acid (ISO) FR900359 (ISO) genistein (ISO) ivermectin (ISO) L-ascorbic acid (EXP) Mesaconitine (EXP) methidathion (ISO) methylparaben (ISO) monosodium L-glutamate (EXP) N-methyl-4-phenylpyridinium (ISO) N-nitrosodiethylamine (EXP) ozone (EXP) palbociclib (ISO) paracetamol (ISO) parathion (ISO) perfluorodecanoic acid (ISO) perfluorononanoic acid (ISO) phenanthrene (ISO) PhIP (EXP) propanal (ISO) Propiverine (EXP) SB 431542 (ISO) selenium atom (ISO) silver atom (ISO) silver(0) (ISO) sodium arsenate (ISO) sodium arsenite (ISO) sunitinib (ISO) tetrachloromethane (EXP) titanium dioxide (ISO) triphenyl phosphate (ISO) tris(2-butoxyethyl) phosphate (ISO) tungsten (ISO)
1.
Structures of the human and Drosophila 80S ribosome.
Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2.
Zinc finger-like motifs in rat ribosomal proteins S27 and S29.
Chan YL, etal., Nucleic Acids Res 1993 Feb 11;21(3):649-55.
3.
Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29.
Collatz E, etal., J Biol Chem. 1977 Dec 25;252(24):9071-80.
4.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.
Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.
Differential gene expression in apoptosis: identification of ribosomal protein S29 as an apoptotic inducer.
Khanna N, etal., Biochem Biophys Res Commun. 2000 Oct 22;277(2):476-86.
6.
Rat ISS GO annotations from MGI mouse gene data--August 2006
MGD data from the GO Consortium
7.
Electronic Transfer of LocusLink and RefSeq Data
NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.
Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits.
O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
9.
GOA pipeline
RGD automated data pipeline
10.
Data Import for Chemical-Gene Interactions
RGD automated import pipeline for gene-chemical interactions
11.
Comprehensive gene review and curation
RGD comprehensive gene curation
12.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
13.
Tentative Sequence Identification Numbers
Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Rps29 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 6 93,371,293 - 93,372,731 (-) NCBI GRCr8 mRatBN7.2 6 87,635,229 - 87,636,627 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 13 85,284,636 - 85,284,968 (+) Ensembl mRatBN7.2 Ensembl mRatBN7.2 Ensembl 6 87,635,230 - 87,636,636 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 6 88,035,099 - 88,036,475 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 6 88,334,529 - 88,335,905 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 6 87,774,278 - 87,775,654 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 6 91,455,333 - 91,456,709 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 6 91,455,333 - 91,456,696 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 7 76,980,040 - 76,980,210 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 3 147,490,496 - 147,490,666 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 6 100,914,106 - 100,915,482 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 6 91,115,709 - 91,117,085 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 6 91,119,164 - 91,120,541 (-) NCBI Celera 6 86,134,478 - 86,135,854 (-) NCBI Celera Cytogenetic Map 6 q24 NCBI
RPS29 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 14 49,570,988 - 49,598,710 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 14 49,570,984 - 49,599,164 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 14 50,037,706 - 50,065,428 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 14 49,113,789 - 49,122,844 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 14 49,120,052 - 49,122,844 NCBI Celera 14 29,903,866 - 29,912,921 (-) NCBI Celera Cytogenetic Map 14 q21.3 NCBI HuRef 14 30,160,698 - 30,170,443 (-) NCBI HuRef CHM1_1 14 49,982,406 - 49,992,150 (-) NCBI CHM1_1 T2T-CHM13v2.0 14 43,769,235 - 43,796,961 (-) NCBI T2T-CHM13v2.0
Rps29 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 12 69,204,495 - 69,205,891 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 12 69,204,496 - 69,205,960 (-) Ensembl GRCm39 Ensembl GRCm38 12 69,157,722 - 69,159,186 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 12 69,157,722 - 69,159,186 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 12 70,258,709 - 70,260,173 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 12 70,076,330 - 70,077,675 (-) NCBI MGSCv36 mm8 Celera 12 70,249,756 - 70,251,220 (-) NCBI Celera Cytogenetic Map 12 C2 NCBI cM Map 12 28.73 NCBI
Rps29 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955409 13,055,341 - 13,056,437 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955409 13,056,022 - 13,057,530 (+) NCBI ChiLan1.0 ChiLan1.0
RPS29 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 15 50,701,900 - 50,711,031 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 14 49,918,405 - 49,927,519 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 14 30,155,559 - 30,164,677 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 14 48,459,215 - 48,474,644 (-) NCBI panpan1.1 PanPan1.1 panPan2
RPS29 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 8 26,221,546 - 26,223,580 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 8 25,975,744 - 25,977,779 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 8 26,399,809 - 26,401,842 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 8 26,396,019 - 26,401,804 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 8 26,055,212 - 26,057,241 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 8 26,128,868 - 26,130,897 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 8 26,445,965 - 26,447,998 (-) NCBI UU_Cfam_GSD_1.0
Rps29
RPS29 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 1 179,454,928 - 179,461,631 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 1 179,454,923 - 179,456,847 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 1 199,694,881 - 199,696,780 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
RPS29 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 24 26,621,394 - 26,631,509 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 24 26,628,561 - 26,632,048 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666053 14,935,901 - 14,945,403 (-) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Rps29
.
Predicted Target Of
Count of predictions: 82 Count of miRNA genes: 70 Interacting mature miRNAs: 73 Transcripts: ENSRNOT00000005577 Prediction methods: Microtar, Miranda, Rnahybrid Result types: miRGate_prediction
1331799 Bp211 Blood pressure QTL 211 3.66407 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 6 72202632 130919985 Rat 634330 Pia16 Pristane induced arthritis QTL 16 3.9 joint integrity trait (VT:0010548) arthritic paw count (CMO:0001460) 6 45790088 104200226 Rat 1331789 Rf37 Renal function QTL 37 3.224 kidney blood vessel physiology trait (VT:0100012) absolute change in renal vascular resistance (CMO:0001900) 6 72202632 115200186 Rat 4145119 Mcs25 Mammary carcinoma susceptibility QTL 25 0.0001 mammary gland integrity trait (VT:0010552) ratio of deaths to total study population during a period of time (CMO:0001023) 6 10894415 110548006 Rat 70176 Mcsm1 Mammary carcinoma susceptibility modifier QTL 1 mammary gland integrity trait (VT:0010552) mammary tumor number (CMO:0000343) 6 58632962 103632962 Rat 1581563 Uae33 Urinary albumin excretion QTL 33 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 6 72227641 130729205 Rat 10054138 Gmadr3 Adrenal mass QTL 3 3.68 0.00045 adrenal gland mass (VT:0010420) both adrenal glands wet weight (CMO:0000164) 6 85140138 130140138 Rat 1558641 Cm47 Cardiac mass QTL 47 2.9 0.001 heart mass (VT:0007028) heart wet weight (CMO:0000069) 6 57730540 104085867 Rat 724524 Uae2 Urinary albumin excretion QTL 2 2.7 0.0005 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 6 73463459 109394713 Rat 737827 Hcar11 Hepatocarcinoma resistance QTL 11 4.4 liver integrity trait (VT:0010547) liver tumorous lesion number (CMO:0001068) 6 82523650 110548006 Rat 1641904 Alcrsp4 Alcohol response QTL 4 response to alcohol trait (VT:0010489) duration of loss of righting reflex (CMO:0002289) 6 67262953 112262953 Rat 724513 Uae14 Urinary albumin excretion QTL 14 6.5 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 6 85311061 133478515 Rat 1576309 Emca7 Estrogen-induced mammary cancer QTL 7 4 mammary gland integrity trait (VT:0010552) mammary tumor number (CMO:0000343) 6 15107216 107351382 Rat 731173 Uae22 Urinary albumin excretion QTL 22 10.1 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 6 65531555 140994061 Rat 2293837 Kiddil1 Kidney dilation QTL 1 3.7 kidney pelvis morphology trait (VT:0004194) hydronephrosis severity score (CMO:0001208) 6 81132889 104393926 Rat 2293842 Kiddil3 Kidney dilation QTL 3 4.3 kidney pelvis morphology trait (VT:0004194) hydronephrosis severity score (CMO:0001208) 6 81132889 104393926 Rat 4889848 Pur25 Proteinuria QTL 25 14 0.003 urine total protein amount (VT:0000032) urine total protein excretion rate (CMO:0000756) 6 56728562 90198260 Rat 10054123 Srcrt6 Stress Responsive Cort QTL 6 2.5 0.0043 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 6 85140138 130140138 Rat 724536 Uae7 Urinary albumin excretion QTL 7 3.5 urine albumin amount (VT:0002871) urine albumin level (CMO:0000130) 6 72202632 130729475 Rat 70196 BpQTLcluster7 Blood pressure QTL cluster 7 6.82 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 6 72202632 117202632 Rat 1581550 Pur8 Proteinuria QTL 8 urine total protein amount (VT:0000032) urine total protein excretion rate (CMO:0000756) 6 72227641 130729205 Rat 1576302 Schws4 Schwannoma susceptibility QTL 4 0.0078 nervous system integrity trait (VT:0010566) percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) 6 83190345 106747639 Rat 1300075 Glom7 Glomerulus QTL 7 5.6 0.0000002 kidney glomerulus morphology trait (VT:0005325) count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002) 6 71201409 116201409 Rat 738034 Anxrr5 Anxiety related response QTL 5 5.9 exploratory behavior trait (VT:0010471) percentage of entries into a discrete space in an experimental apparatus (CMO:0000961) 6 84130881 129130881 Rat 2290393 Uae37 Urinary albumin excretion QTL 37 0.0001 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 6 65531555 140994061 Rat 12801471 Schws9 Schwannoma susceptibility QTL 9 nervous system integrity trait (VT:0010566) percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) 6 61747639 106747639 Rat 6893332 Cm74 Cardiac mass QTL 74 0.4 0.64 heart mass (VT:0007028) heart weight to body weight ratio (CMO:0000074) 6 57730540 104085867 Rat 1300076 Glom8 Glomerulus QTL 8 7 9e-09 kidney glomerulus morphology trait (VT:0005325) count of superficial glomeruli directly contacting the kidney surface (CMO:0001001) 6 86894788 131894788 Rat
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
28
22
124
279
215
213
136
61
136
17
523
243
229
105
148
77
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Ensembl Acc Id:
ENSRNOT00000005577 ⟹ ENSRNOP00000005577
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 6 87,635,230 - 87,636,636 (-) Ensembl Rnor_6.0 Ensembl 6 91,455,333 - 91,456,696 (-) Ensembl
Ensembl Acc Id:
ENSRNOT00000116660 ⟹ ENSRNOP00000097962
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 6 87,635,820 - 87,636,636 (-) Ensembl
RefSeq Acc Id:
NM_012876 ⟹ NP_037008
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 6 93,371,293 - 93,372,691 (-) NCBI mRatBN7.2 6 87,635,229 - 87,636,627 (-) NCBI Rnor_6.0 6 91,455,333 - 91,456,709 (-) NCBI Rnor_5.0 6 100,914,106 - 100,915,482 (-) NCBI RGSC_v3.4 6 91,115,709 - 91,117,085 (-) RGD Celera 6 86,134,478 - 86,135,854 (-) RGD
Sequence:
CTCGTTCCTTTTTCCTCCTTGGGCGTCTGAAGGCAAGATGGGTCACCAGCAGCTCTACTGGAGTCACCCGCGGAAGTTCGGCCAGGGTTCTCGCTCTTGCCGCGTCTGCTCTAACCGCCACGGTCTGA
hide sequence
RefSeq Acc Id:
XM_063261561 ⟹ XP_063117631
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 6 93,371,293 - 93,372,731 (-) NCBI
RefSeq Acc Id:
NP_037008 ⟸ NM_012876
- UniProtKB:
P62275 (UniProtKB/Swiss-Prot), A6HBU3 (UniProtKB/TrEMBL)
- Sequence:
MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD
hide sequence
Ensembl Acc Id:
ENSRNOP00000005577 ⟸ ENSRNOT00000005577
Ensembl Acc Id:
ENSRNOP00000097962 ⟸ ENSRNOT00000116660
RefSeq Acc Id:
XP_063117631 ⟸ XM_063261561
- Peptide Label:
isoform X1
- UniProtKB:
A0A8I6GMA6 (UniProtKB/TrEMBL)
RGD ID: 13694630 Promoter ID: EPDNEW_R5154 Type: initiation region Name: LOC108352650_1 Description: 40S ribosomal protein S29 SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 6 91,456,731 - 91,456,791 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2002-06-10
Rps29
Ribosomal protein S29
Symbol and Name status set to approved
70586 APPROVED
Note Type
Note
Reference
gene_protein
55 amino acids and a molecular weight of 6,541
633964
