Rps29 (ribosomal protein S29) - Rat Genome Database

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Gene: Rps29 (ribosomal protein S29) Rattus norvegicus
Analyze
Symbol: Rps29 (Ensembl: Rps29l5)
Name: ribosomal protein S29 (Ensembl:ribosomal protein S29 like 5)
RGD ID: 3596
Description: Predicted to enable zinc ion binding activity. Predicted to be a structural constituent of ribosome. Involved in positive regulation of apoptotic process. Part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 13. Orthologous to human RPS29 (ribosomal protein S29); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S29; small ribosomal subunit protein uS14
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rps29-ps15   Rps29-ps16   Rps29-ps17  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8693,371,293 - 93,372,731 (-)NCBIGRCr8
mRatBN7.2687,635,229 - 87,636,627 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1385,284,636 - 85,284,968 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl687,635,230 - 87,636,636 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx688,035,099 - 88,036,475 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0688,334,529 - 88,335,905 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0687,774,278 - 87,775,654 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0691,455,333 - 91,456,709 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl691,455,333 - 91,456,696 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl776,980,040 - 76,980,210 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,490,496 - 147,490,666 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06100,914,106 - 100,915,482 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4691,115,709 - 91,117,085 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1691,119,164 - 91,120,541 (-)NCBI
Celera686,134,478 - 86,135,854 (-)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
6-propyl-2-thiouracil  (EXP)
all-trans-retinoic acid  (ISO)
Allylamine  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium dichloride  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clofibric acid  (EXP)
clothianidin  (ISO)
copper(II) sulfate  (ISO)
cypermethrin  (EXP)
deoxynivalenol  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dichlorine  (EXP)
dicrotophos  (ISO)
diuron  (EXP)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
fenthion  (ISO)
folic acid  (ISO)
FR900359  (ISO)
genistein  (ISO)
ivermectin  (ISO)
L-ascorbic acid  (EXP)
Mesaconitine  (EXP)
methidathion  (ISO)
methylparaben  (ISO)
monosodium L-glutamate  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
ozone  (EXP)
palbociclib  (ISO)
paracetamol  (ISO)
parathion  (ISO)
perfluorodecanoic acid  (ISO)
perfluorononanoic acid  (ISO)
phenanthrene  (ISO)
PhIP  (EXP)
propanal  (ISO)
Propiverine  (EXP)
SB 431542  (ISO)
selenium atom  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
tungsten  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
RNA binding  (IEA)
structural constituent of ribosome  (IBA,IEA,ISO)
zinc ion binding  (IBA,IEA,ISO,ISS)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Zinc finger-like motifs in rat ribosomal proteins S27 and S29. Chan YL, etal., Nucleic Acids Res 1993 Feb 11;21(3):649-55.
3. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29. Collatz E, etal., J Biol Chem. 1977 Dec 25;252(24):9071-80.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Differential gene expression in apoptosis: identification of ribosomal protein S29 as an apoptotic inducer. Khanna N, etal., Biochem Biophys Res Commun. 2000 Oct 22;277(2):476-86.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
13. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:8706699   PMID:8781548   PMID:15489334   PMID:15883184   PMID:20458337   PMID:21423176   PMID:24930395   PMID:25957688   PMID:31505169   PMID:35352799  


Genomics

Comparative Map Data
Rps29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8693,371,293 - 93,372,731 (-)NCBIGRCr8
mRatBN7.2687,635,229 - 87,636,627 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1385,284,636 - 85,284,968 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl687,635,230 - 87,636,636 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx688,035,099 - 88,036,475 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0688,334,529 - 88,335,905 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0687,774,278 - 87,775,654 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0691,455,333 - 91,456,709 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl691,455,333 - 91,456,696 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl776,980,040 - 76,980,210 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,490,496 - 147,490,666 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06100,914,106 - 100,915,482 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4691,115,709 - 91,117,085 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1691,119,164 - 91,120,541 (-)NCBI
Celera686,134,478 - 86,135,854 (-)NCBICelera
Cytogenetic Map6q24NCBI
RPS29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381449,570,988 - 49,598,710 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1449,570,984 - 49,599,164 (-)EnsemblGRCh38hg38GRCh38
GRCh371450,037,706 - 50,065,428 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361449,113,789 - 49,122,844 (-)NCBINCBI36Build 36hg18NCBI36
Build 341449,120,052 - 49,122,844NCBI
Celera1429,903,866 - 29,912,921 (-)NCBICelera
Cytogenetic Map14q21.3NCBI
HuRef1430,160,698 - 30,170,443 (-)NCBIHuRef
CHM1_11449,982,406 - 49,992,150 (-)NCBICHM1_1
T2T-CHM13v2.01443,769,235 - 43,796,961 (-)NCBIT2T-CHM13v2.0
Rps29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391269,204,495 - 69,205,891 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1269,204,496 - 69,205,960 (-)EnsemblGRCm39 Ensembl
GRCm381269,157,722 - 69,159,186 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1269,157,722 - 69,159,186 (-)EnsemblGRCm38mm10GRCm38
MGSCv371270,258,709 - 70,260,173 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361270,076,330 - 70,077,675 (-)NCBIMGSCv36mm8
Celera1270,249,756 - 70,251,220 (-)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1228.73NCBI
Rps29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540913,055,341 - 13,056,437 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540913,056,022 - 13,057,530 (+)NCBIChiLan1.0ChiLan1.0
RPS29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21550,701,900 - 50,711,031 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11449,918,405 - 49,927,519 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01430,155,559 - 30,164,677 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11448,459,215 - 48,474,644 (-)NCBIpanpan1.1PanPan1.1panPan2
RPS29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1826,221,546 - 26,223,580 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha825,975,744 - 25,977,779 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0826,399,809 - 26,401,842 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl826,396,019 - 26,401,804 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1826,055,212 - 26,057,241 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0826,128,868 - 26,130,897 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0826,445,965 - 26,447,998 (-)NCBIUU_Cfam_GSD_1.0
Rps29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864058,260,904 - 58,262,457 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936583426,476 - 428,008 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1179,454,928 - 179,461,631 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11179,454,923 - 179,456,847 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21199,694,881 - 199,696,780 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12426,621,394 - 26,631,509 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2426,628,561 - 26,632,048 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605314,935,901 - 14,945,403 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473119,107,593 - 19,109,651 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rps29
8 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:70
Interacting mature miRNAs:73
Transcripts:ENSRNOT00000005577
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)658632962103632962Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)682523650110548006Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65672856290198260Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)683190345106747639Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1300076Glom8Glomerulus QTL 879e-09kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
28 22 124 279 215 213 136 61 136 17 523 243 229 105 148 77

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_012876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC058150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X59051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000005577   ⟹   ENSRNOP00000005577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl687,635,230 - 87,636,636 (-)Ensembl
Rnor_6.0 Ensembl691,455,333 - 91,456,696 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116660   ⟹   ENSRNOP00000097962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl687,635,820 - 87,636,636 (-)Ensembl
RefSeq Acc Id: NM_012876   ⟹   NP_037008
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8693,371,293 - 93,372,691 (-)NCBI
mRatBN7.2687,635,229 - 87,636,627 (-)NCBI
Rnor_6.0691,455,333 - 91,456,709 (-)NCBI
Rnor_5.06100,914,106 - 100,915,482 (-)NCBI
RGSC_v3.4691,115,709 - 91,117,085 (-)RGD
Celera686,134,478 - 86,135,854 (-)RGD
Sequence:
RefSeq Acc Id: XM_063261561   ⟹   XP_063117631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8693,371,293 - 93,372,731 (-)NCBI
RefSeq Acc Id: NP_037008   ⟸   NM_012876
- UniProtKB: P62275 (UniProtKB/Swiss-Prot),   A6HBU3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005577   ⟸   ENSRNOT00000005577
Ensembl Acc Id: ENSRNOP00000097962   ⟸   ENSRNOT00000116660
RefSeq Acc Id: XP_063117631   ⟸   XM_063261561
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GMA6 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62275-F1-model_v2 AlphaFold P62275 1-56 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694630
Promoter ID:EPDNEW_R5154
Type:initiation region
Name:LOC108352650_1
Description:40S ribosomal protein S29
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0691,456,731 - 91,456,791EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3596 AgrOrtholog
BioCyc Gene G2FUF-37262 BioCyc
Ensembl Genes ENSRNOG00000004196 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00000028939 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000029443 Ensembl
  ENSRNOG00000032542 Ensembl
  ENSRNOG00055008896 UniProtKB/Swiss-Prot
  ENSRNOG00055023956 UniProtKB/Swiss-Prot
  ENSRNOG00055025614 UniProtKB/Swiss-Prot
  ENSRNOG00055029270 UniProtKB/Swiss-Prot
  ENSRNOG00060006191 UniProtKB/Swiss-Prot
  ENSRNOG00060027659 UniProtKB/Swiss-Prot
  ENSRNOG00060030916 UniProtKB/Swiss-Prot
  ENSRNOG00060032249 UniProtKB/Swiss-Prot
  ENSRNOG00065006539 UniProtKB/Swiss-Prot
  ENSRNOG00065025281 UniProtKB/Swiss-Prot
  ENSRNOG00065027296 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000005577.8 UniProtKB/Swiss-Prot
  ENSRNOT00000041384.5 UniProtKB/Swiss-Prot
  ENSRNOT00000116660.1 UniProtKB/TrEMBL
  ENSRNOT00055015012 UniProtKB/Swiss-Prot
  ENSRNOT00055041132 UniProtKB/Swiss-Prot
  ENSRNOT00055044183 UniProtKB/Swiss-Prot
  ENSRNOT00055050710 UniProtKB/Swiss-Prot
  ENSRNOT00060010196 UniProtKB/Swiss-Prot
  ENSRNOT00060047982 UniProtKB/Swiss-Prot
  ENSRNOT00060053672 UniProtKB/Swiss-Prot
  ENSRNOT00060055882 UniProtKB/Swiss-Prot
  ENSRNOT00065010106 UniProtKB/Swiss-Prot
  ENSRNOT00065043535 UniProtKB/Swiss-Prot
  ENSRNOT00065047065 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6922365 IMAGE-MGC_LOAD
InterPro 40S_S29/30S_S14z UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S14/S29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S14_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S14_type-Z_arc UniProtKB/TrEMBL
KEGG Report rno:25348 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:72902 IMAGE-MGC_LOAD
NCBI Gene 25348 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12010 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_S14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rps29 PhenoGen
PROSITE RIBOSOMAL_S14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004196 RatGTEx
  ENSRNOG00000028939 RatGTEx
  ENSRNOG00000029443 RatGTEx
  ENSRNOG00000032542 RatGTEx
  ENSRNOG00055008896 RatGTEx
  ENSRNOG00055023956 RatGTEx
  ENSRNOG00055025614 RatGTEx
  ENSRNOG00055029270 RatGTEx
  ENSRNOG00060006191 RatGTEx
  ENSRNOG00060027659 RatGTEx
  ENSRNOG00060030916 RatGTEx
  ENSRNOG00060032249 RatGTEx
  ENSRNOG00065006539 RatGTEx
  ENSRNOG00065025281 RatGTEx
  ENSRNOG00065027296 RatGTEx
TIGR TC216887
UniProt A0A8I6GMA6 ENTREZGENE, UniProtKB/TrEMBL
  A6HBU3 ENTREZGENE, UniProtKB/TrEMBL
  P62275 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P30054 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Rps29  Ribosomal protein S29      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein 55 amino acids and a molecular weight of 6,541 633964