Rps29 (ribosomal protein S29) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Rps29 (ribosomal protein S29) Ictidomys tridecemlineatus
Analyze
Symbol: Rps29
Name: ribosomal protein S29
RGD ID: 12607639
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); zinc ion binding (inferred); INVOLVED IN cytoplasmic translation (ortholog); positive regulation of apoptotic process (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Diamond-Blackfan anemia 13 (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosolic small ribosomal subunit (ortholog); ribosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S29
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864058,260,904 - 58,262,457 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936583426,476 - 428,008 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rps29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864058,260,904 - 58,262,457 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936583426,476 - 428,008 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381449,570,988 - 49,598,710 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1449,570,984 - 49,599,164 (-)EnsemblGRCh38hg38GRCh38
GRCh371450,037,706 - 50,065,428 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361449,113,789 - 49,122,844 (-)NCBINCBI36Build 36hg18NCBI36
Build 341449,120,052 - 49,122,844NCBI
Celera1429,903,866 - 29,912,921 (-)NCBICelera
Cytogenetic Map14q21.3NCBI
HuRef1430,160,698 - 30,170,443 (-)NCBIHuRef
CHM1_11449,982,406 - 49,992,150 (-)NCBICHM1_1
T2T-CHM13v2.01443,769,235 - 43,796,961 (-)NCBIT2T-CHM13v2.0
Rps29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391269,204,495 - 69,205,891 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1269,204,496 - 69,205,960 (-)EnsemblGRCm39 Ensembl
GRCm381269,157,722 - 69,159,186 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1269,157,722 - 69,159,186 (-)EnsemblGRCm38mm10GRCm38
MGSCv371270,258,709 - 70,260,173 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361270,076,330 - 70,077,675 (-)NCBIMGSCv36mm8
Celera1270,249,756 - 70,251,220 (-)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1228.73NCBI
Rps29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8693,371,293 - 93,372,731 (-)NCBIGRCr8
mRatBN7.2687,635,229 - 87,636,627 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl687,635,230 - 87,636,636 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx688,035,099 - 88,036,475 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0688,334,529 - 88,335,905 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0687,774,278 - 87,775,654 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0691,455,333 - 91,456,709 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl691,455,333 - 91,456,696 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl776,980,040 - 76,980,210 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,490,496 - 147,490,666 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06100,914,106 - 100,915,482 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4691,115,709 - 91,117,085 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1691,119,164 - 91,120,541 (-)NCBI
Celera686,134,478 - 86,135,854 (-)NCBICelera
Cytogenetic Map6q24NCBI
Rps29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540913,055,341 - 13,056,437 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540913,056,022 - 13,057,530 (+)NCBIChiLan1.0ChiLan1.0
RPS29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21550,701,900 - 50,711,031 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11449,918,405 - 49,927,519 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01430,155,559 - 30,164,677 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11448,459,215 - 48,474,644 (-)NCBIpanpan1.1PanPan1.1panPan2
RPS29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1826,221,546 - 26,223,580 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha825,975,744 - 25,977,779 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0826,399,809 - 26,401,842 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl826,396,019 - 26,401,804 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1826,055,212 - 26,057,241 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0826,128,868 - 26,130,897 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0826,445,965 - 26,447,998 (-)NCBIUU_Cfam_GSD_1.0
RPS29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1179,454,928 - 179,461,631 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11179,454,923 - 179,456,847 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21199,694,881 - 199,696,780 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12426,621,394 - 26,631,509 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2426,628,561 - 26,632,048 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605314,935,901 - 14,945,403 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473119,107,593 - 19,109,651 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005331743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005331743   ⟹   XP_005331800
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864058,260,904 - 58,262,457 (-)NCBI
SpeTri2.0NW_004936583426,476 - 428,008 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005331800 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000006185.3
GenBank Protein KAG3261160 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005331800   ⟸   XM_005331743
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006936 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006920.3 UniProtKB/TrEMBL
InterPro 40S_S29/30S_S14z UniProtKB/TrEMBL
  Ribosomal_S14 UniProtKB/TrEMBL
  Ribosomal_S14/S29 UniProtKB/TrEMBL
  Ribosomal_S14_CS UniProtKB/TrEMBL
NCBI Gene Rps29 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S29 UniProtKB/TrEMBL
  PTHR12010 UniProtKB/TrEMBL
Pfam Ribosomal_S14 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S14 UniProtKB/TrEMBL
UniProt I3M8S3_ICTTR UniProtKB/TrEMBL