RPS29 (ribosomal protein S29) - Rat Genome Database

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Gene: RPS29 (ribosomal protein S29) Sus scrofa
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Symbol: RPS29
Name: ribosomal protein S29
RGD ID: 14115236
Description: ENCODES a protein that exhibits zinc ion binding (ortholog); INVOLVED IN cytoplasmic translation (ortholog); positive regulation of apoptotic process (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Diamond-Blackfan anemia 13 (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane; cytosolic small ribosomal subunit; ribosome (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S29; small ribosomal subunit protein uS14
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1179,454,928 - 179,461,631 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11179,454,923 - 179,456,847 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21199,694,881 - 199,696,780 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:24930395   PMID:30032202  


Genomics

Comparative Map Data
RPS29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1179,454,928 - 179,461,631 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11179,454,923 - 179,456,847 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21199,694,881 - 199,696,780 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381449,570,988 - 49,598,710 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1449,570,984 - 49,599,164 (-)EnsemblGRCh38hg38GRCh38
GRCh371450,037,706 - 50,065,428 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361449,113,789 - 49,122,844 (-)NCBINCBI36Build 36hg18NCBI36
Build 341449,120,052 - 49,122,844NCBI
Celera1429,903,866 - 29,912,921 (-)NCBICelera
Cytogenetic Map14q21.3NCBI
HuRef1430,160,698 - 30,170,443 (-)NCBIHuRef
CHM1_11449,982,406 - 49,992,150 (-)NCBICHM1_1
T2T-CHM13v2.01443,769,235 - 43,796,961 (-)NCBIT2T-CHM13v2.0
Rps29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391269,204,495 - 69,205,891 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1269,204,496 - 69,205,960 (-)EnsemblGRCm39 Ensembl
GRCm381269,157,722 - 69,159,186 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1269,157,722 - 69,159,186 (-)EnsemblGRCm38mm10GRCm38
MGSCv371270,258,709 - 70,260,173 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361270,076,330 - 70,077,675 (-)NCBIMGSCv36mm8
Celera1270,249,756 - 70,251,220 (-)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1228.73NCBI
Rps29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8693,371,293 - 93,372,731 (-)NCBIGRCr8
mRatBN7.2687,635,229 - 87,636,627 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1385,284,636 - 85,284,968 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl687,635,230 - 87,636,636 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx688,035,099 - 88,036,475 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0688,334,529 - 88,335,905 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0687,774,278 - 87,775,654 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0691,455,333 - 91,456,709 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl691,455,333 - 91,456,696 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl776,980,040 - 76,980,210 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,490,496 - 147,490,666 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06100,914,106 - 100,915,482 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4691,115,709 - 91,117,085 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1691,119,164 - 91,120,541 (-)NCBI
Celera686,134,478 - 86,135,854 (-)NCBICelera
Cytogenetic Map6q24NCBI
Rps29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540913,055,341 - 13,056,437 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540913,056,022 - 13,057,530 (+)NCBIChiLan1.0ChiLan1.0
RPS29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21550,701,900 - 50,711,031 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11449,918,405 - 49,927,519 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01430,155,559 - 30,164,677 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11448,459,215 - 48,474,644 (-)NCBIpanpan1.1PanPan1.1panPan2
RPS29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1826,221,546 - 26,223,580 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha825,975,744 - 25,977,779 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0826,399,809 - 26,401,842 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl826,396,019 - 26,401,804 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1826,055,212 - 26,057,241 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0826,128,868 - 26,130,897 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0826,445,965 - 26,447,998 (-)NCBIUU_Cfam_GSD_1.0
Rps29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864058,260,904 - 58,262,457 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936583426,476 - 428,008 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12426,621,394 - 26,631,509 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2426,628,561 - 26,632,048 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605314,935,901 - 14,945,403 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473119,107,593 - 19,109,651 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPS29
52 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000005518   ⟹   ENSSSCP00000005381
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1179,454,928 - 179,456,807 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000054553   ⟹   ENSSSCP00000046039
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1179,455,717 - 179,456,779 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000074782   ⟹   ENSSSCP00000071848
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1179,454,928 - 179,461,631 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000099364   ⟹   ENSSSCP00000078546
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1179,456,258 - 179,456,807 (-)Ensembl
RefSeq Acc Id: XM_021101312   ⟹   XP_020956971
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11179,454,923 - 179,456,847 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021101317   ⟹   XP_020956976
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11179,454,923 - 179,456,847 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020956976   ⟸   XM_021101317
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020956971   ⟸   XM_021101312
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSSSCP00000005381   ⟸   ENSSSCT00000005518
Ensembl Acc Id: ENSSSCP00000046039   ⟸   ENSSSCT00000054553
Ensembl Acc Id: ENSSSCP00000071848   ⟸   ENSSSCT00000074782
Ensembl Acc Id: ENSSSCP00000078546   ⟸   ENSSSCT00000099364


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038507 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015000922 UniProtKB/TrEMBL
  ENSSSCG00025071190 UniProtKB/TrEMBL
  ENSSSCG00030066717 UniProtKB/TrEMBL
  ENSSSCG00040010163 UniProtKB/TrEMBL
  ENSSSCG00045007818 UniProtKB/TrEMBL
  ENSSSCG00050069300 UniProtKB/TrEMBL
  ENSSSCG00055011329 UniProtKB/TrEMBL
  ENSSSCG00060019405 UniProtKB/TrEMBL
  ENSSSCG00065063181 UniProtKB/TrEMBL
  ENSSSCG00070001432 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005518 ENTREZGENE
  ENSSSCT00000005518.5 UniProtKB/TrEMBL
  ENSSSCT00000074782.2 UniProtKB/TrEMBL
  ENSSSCT00000099364 ENTREZGENE
  ENSSSCT00000099364.1 UniProtKB/TrEMBL
  ENSSSCT00015001216.1 UniProtKB/TrEMBL
  ENSSSCT00025097794.1 UniProtKB/TrEMBL
  ENSSSCT00025097873.1 UniProtKB/TrEMBL
  ENSSSCT00025097911.1 UniProtKB/TrEMBL
  ENSSSCT00030093251.1 UniProtKB/TrEMBL
  ENSSSCT00040013350.1 UniProtKB/TrEMBL
  ENSSSCT00045013143.1 UniProtKB/TrEMBL
  ENSSSCT00045013168.1 UniProtKB/TrEMBL
  ENSSSCT00050094561.1 UniProtKB/TrEMBL
  ENSSSCT00055022283.1 UniProtKB/TrEMBL
  ENSSSCT00055022320.1 UniProtKB/TrEMBL
  ENSSSCT00055022342.1 UniProtKB/TrEMBL
  ENSSSCT00060026151.1 UniProtKB/TrEMBL
  ENSSSCT00060026159.1 UniProtKB/TrEMBL
  ENSSSCT00065086674.1 UniProtKB/TrEMBL
  ENSSSCT00065086688.1 UniProtKB/TrEMBL
  ENSSSCT00065086697.1 UniProtKB/TrEMBL
  ENSSSCT00070002682.1 UniProtKB/TrEMBL
  ENSSSCT00070002703.1 UniProtKB/TrEMBL
  ENSSSCT00070002715.1 UniProtKB/TrEMBL
InterPro 40S_S29/30S_S14z UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S14/S29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S14_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S14_type-Z_arc UniProtKB/TrEMBL
NCBI Gene RPS29 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12010 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_S14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A287AQ67_PIG UniProtKB/TrEMBL
  A0A4X1SIU9_PIG UniProtKB/TrEMBL
  A0A4X1SJM2_PIG UniProtKB/TrEMBL
  A0A4X1SK15 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0T8B8_PIG UniProtKB/TrEMBL
  A0A8D0T8G6 ENTREZGENE, UniProtKB/TrEMBL
  F2Z5R7 ENTREZGENE
  Q6QAP6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A5G2R3R6 UniProtKB/TrEMBL
  F2Z5R7 UniProtKB/TrEMBL
VGNC ID VGNC:109542 ENTREZGENE