RPS29 (ribosomal protein S29) - Rat Genome Database

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Gene: RPS29 (ribosomal protein S29) Canis lupus familiaris
Analyze
Symbol: RPS29
Name: ribosomal protein S29
RGD ID: 12280076
Description: ENCODES a protein that exhibits RNA binding (inferred); structural constituent of ribosome (inferred); zinc ion binding (inferred); INVOLVED IN cytoplasmic translation (ortholog); positive regulation of apoptotic process (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Diamond-Blackfan anemia 13 (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosolic small ribosomal subunit (ortholog); ribosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S29
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1826,221,546 - 26,223,580 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha825,975,744 - 25,977,779 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0826,399,809 - 26,401,842 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl826,396,019 - 26,401,804 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1826,055,212 - 26,057,241 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0826,128,868 - 26,130,897 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0826,445,965 - 26,447,998 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPS29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1826,221,546 - 26,223,580 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha825,975,744 - 25,977,779 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0826,399,809 - 26,401,842 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl826,396,019 - 26,401,804 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1826,055,212 - 26,057,241 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0826,128,868 - 26,130,897 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0826,445,965 - 26,447,998 (-)NCBIUU_Cfam_GSD_1.0
RPS29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381449,570,988 - 49,598,710 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1449,570,984 - 49,599,164 (-)EnsemblGRCh38hg38GRCh38
GRCh371450,037,706 - 50,065,428 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361449,113,789 - 49,122,844 (-)NCBINCBI36Build 36hg18NCBI36
Build 341449,120,052 - 49,122,844NCBI
Celera1429,903,866 - 29,912,921 (-)NCBICelera
Cytogenetic Map14q21.3NCBI
HuRef1430,160,698 - 30,170,443 (-)NCBIHuRef
CHM1_11449,982,406 - 49,992,150 (-)NCBICHM1_1
T2T-CHM13v2.01443,769,235 - 43,796,961 (-)NCBIT2T-CHM13v2.0
Rps29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391269,204,495 - 69,205,891 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1269,204,496 - 69,205,960 (-)EnsemblGRCm39 Ensembl
GRCm381269,157,722 - 69,159,186 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1269,157,722 - 69,159,186 (-)EnsemblGRCm38mm10GRCm38
MGSCv371270,258,709 - 70,260,173 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361270,076,330 - 70,077,675 (-)NCBIMGSCv36mm8
Celera1270,249,756 - 70,251,220 (-)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1228.73NCBI
Rps29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8693,371,293 - 93,372,731 (-)NCBIGRCr8
mRatBN7.2687,635,229 - 87,636,627 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl687,635,230 - 87,636,636 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx688,035,099 - 88,036,475 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0688,334,529 - 88,335,905 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0687,774,278 - 87,775,654 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0691,455,333 - 91,456,709 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl691,455,333 - 91,456,696 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl776,980,040 - 76,980,210 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,490,496 - 147,490,666 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06100,914,106 - 100,915,482 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4691,115,709 - 91,117,085 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1691,119,164 - 91,120,541 (-)NCBI
Celera686,134,478 - 86,135,854 (-)NCBICelera
Cytogenetic Map6q24NCBI
Rps29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540913,055,341 - 13,056,437 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540913,056,022 - 13,057,530 (+)NCBIChiLan1.0ChiLan1.0
RPS29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21550,701,900 - 50,711,031 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11449,918,405 - 49,927,519 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01430,155,559 - 30,164,677 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11448,459,215 - 48,474,644 (-)NCBIpanpan1.1PanPan1.1panPan2
Rps29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864058,260,904 - 58,262,457 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936583426,476 - 428,008 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1179,454,928 - 179,461,631 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11179,454,923 - 179,456,847 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21199,694,881 - 199,696,780 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12426,621,394 - 26,631,509 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2426,628,561 - 26,632,048 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605314,935,901 - 14,945,403 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473119,107,593 - 19,109,651 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPS29
25 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00845003871   ⟹   ENSCAFP00845003085
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl826,396,019 - 26,401,804 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845003877   ⟹   ENSCAFP00845003090
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl826,399,458 - 26,401,770 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845003884   ⟹   ENSCAFP00845003095
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl826,401,192 - 26,401,804 (-)Ensembl
RefSeq Acc Id: XM_038483202   ⟹   XP_038339130
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1826,055,212 - 26,057,241 (-)NCBI
RefSeq Acc Id: XM_038544653   ⟹   XP_038400581
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0826,445,965 - 26,447,998 (-)NCBI
RefSeq Acc Id: XM_038608777   ⟹   XP_038464705
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0826,128,868 - 26,130,897 (-)NCBI
RefSeq Acc Id: XM_038673557   ⟹   XP_038529485
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0826,399,809 - 26,401,842 (-)NCBI
RefSeq Acc Id: XM_848130   ⟹   XP_853223
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1826,221,546 - 26,223,580 (-)NCBI
Dog10K_Boxer_Tasha825,975,744 - 25,977,779 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_853223   ⟸   XM_848130
- UniProtKB: A0A8C0LXK4 (UniProtKB/TrEMBL),   A0A8I3RQJ0 (UniProtKB/TrEMBL),   A0A8C0QGC9 (UniProtKB/TrEMBL),   A0A8I3PES0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038339130   ⟸   XM_038483202
RefSeq Acc Id: XP_038464705   ⟸   XM_038608777
RefSeq Acc Id: XP_038529485   ⟸   XM_038673557
- UniProtKB: A0A8C0LXK4 (UniProtKB/TrEMBL),   A0A8I3RQJ0 (UniProtKB/TrEMBL),   A0A8C0QGC9 (UniProtKB/TrEMBL),   A0A8I3PES0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038400581   ⟸   XM_038544653
- UniProtKB: A0A8C0LXK4 (UniProtKB/TrEMBL),   A0A8C0QGC9 (UniProtKB/TrEMBL),   A0A8I3PES0 (UniProtKB/TrEMBL),   A0A8I3RQJ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845003090   ⟸   ENSCAFT00845003877
RefSeq Acc Id: ENSCAFP00845003095   ⟸   ENSCAFT00845003884
RefSeq Acc Id: ENSCAFP00845003085   ⟸   ENSCAFT00845003871


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000049043 UniProtKB/TrEMBL
  ENSCAFG00000049427 UniProtKB/TrEMBL
  ENSCAFG00030000664 UniProtKB/TrEMBL
  ENSCAFG00040002483 UniProtKB/TrEMBL
  ENSCAFG00040006411 UniProtKB/TrEMBL
  ENSCAFG00845002205 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFG00845018718 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000060687.2 UniProtKB/TrEMBL
  ENSCAFT00000064349.2 UniProtKB/TrEMBL
  ENSCAFT00000082292.2 UniProtKB/TrEMBL
  ENSCAFT00030001112.1 UniProtKB/TrEMBL
  ENSCAFT00040004747.1 UniProtKB/TrEMBL
  ENSCAFT00040011946.1 UniProtKB/TrEMBL
  ENSCAFT00845003877 ENTREZGENE
  ENSCAFT00845003877.1 UniProtKB/TrEMBL
  ENSCAFT00845003884.1 UniProtKB/TrEMBL
  ENSCAFT00845033071.1 UniProtKB/TrEMBL
InterPro 40S_S29/30S_S14z UniProtKB/TrEMBL
  Ribosomal_S14 UniProtKB/TrEMBL
  Ribosomal_S14/S29 UniProtKB/TrEMBL
  Ribosomal_S14_CS UniProtKB/TrEMBL
  Ribosomal_S14_type-Z_arc UniProtKB/TrEMBL
KEGG Report cfa:610596 UniProtKB/TrEMBL
NCBI Gene RPS29 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S29 UniProtKB/TrEMBL
  PTHR12010 UniProtKB/TrEMBL
Pfam Ribosomal_S14 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S14 UniProtKB/TrEMBL
UniProt A0A8C0LXK4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QGC9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MKD3_CANLF UniProtKB/TrEMBL
  A0A8I3PES0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RQJ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TCS1_CANLF UniProtKB/TrEMBL