Il1r1 (interleukin 1 receptor type 1) - Rat Genome Database

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Gene: Il1r1 (interleukin 1 receptor type 1) Heterocephalus glaber
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Symbol: Il1r1
Name: interleukin 1 receptor type 1
RGD ID: 18910870
Description: ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); platelet-derived growth factor receptor binding (ortholog); protease binding (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); cytokine-mediated signaling pathway (ortholog); heat acclimation (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; interleukin-12 signaling pathway; ASSOCIATED WITH allergic disease (ortholog); aortic dissection (ortholog); Bacterial Keratitis (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); external side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interleukin-1 receptor type 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247496,708,522 - 6,739,871 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247496,661,142 - 6,737,988 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Il1r1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247496,708,522 - 6,739,871 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247496,661,142 - 6,737,988 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
IL1R1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382102,070,390 - 102,179,874 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2102,064,544 - 102,179,874 (+)EnsemblGRCh38hg38GRCh38
GRCh372102,686,850 - 102,796,334 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362102,136,834 - 102,162,766 (+)NCBINCBI36Build 36hg18NCBI36
Build 342102,228,919 - 102,254,852NCBI
Celera296,971,617 - 96,997,550 (+)NCBICelera
Cytogenetic Map2q11.2-q12.1NCBI
HuRef296,534,264 - 96,560,197 (+)NCBIHuRef
CHM1_12102,774,745 - 102,800,675 (+)NCBICHM1_1
T2T-CHM13v2.02102,528,685 - 102,638,160 (+)NCBIT2T-CHM13v2.0
Il1r1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39140,261,651 - 40,355,361 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl140,264,240 - 40,356,417 (+)EnsemblGRCm39 Ensembl
GRCm38140,222,480 - 40,316,201 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl140,225,080 - 40,317,257 (+)EnsemblGRCm38mm10GRCm38
MGSCv37140,281,925 - 40,373,022 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36140,169,626 - 40,260,723 (+)NCBIMGSCv36mm8
Celera140,033,653 - 40,127,353 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map118.81NCBI
Il1r1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8950,000,558 - 50,076,579 (+)NCBIGRCr8
mRatBN7.2942,504,917 - 42,580,958 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl942,504,735 - 42,579,937 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx951,042,291 - 51,080,451 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0956,165,013 - 56,203,144 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0954,441,033 - 54,478,767 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0946,962,291 - 47,038,139 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl946,962,288 - 47,036,670 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0946,647,422 - 46,723,241 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4939,434,910 - 39,473,552 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1939,434,750 - 39,475,060 (+)NCBI
Celera940,285,956 - 40,323,730 (+)NCBICelera
RH 3.4 Map9396.1RGD
Cytogenetic Map9q22NCBI
Il1r1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554707,685,498 - 7,703,374 (+)NCBIChiLan1.0ChiLan1.0
IL1R1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21226,052,033 - 26,167,680 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A26,054,794 - 26,164,430 (-)NCBINHGRI_mPanPan1
PanPan1.12A103,151,559 - 103,230,005 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A103,193,131 - 103,230,005 (+)Ensemblpanpan1.1panPan2
IL1R1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11040,825,986 - 40,897,898 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1040,827,377 - 40,897,596 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1040,751,798 - 40,823,679 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01041,692,476 - 41,764,370 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1041,692,623 - 41,811,603 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11041,406,689 - 41,478,437 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01041,688,685 - 41,760,634 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01041,880,427 - 41,952,281 (-)NCBIUU_Cfam_GSD_1.0
Il1r1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629290,252,781 - 90,324,177 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936713808,659 - 881,076 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936713808,761 - 881,070 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL1R1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl352,192,915 - 52,288,485 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1352,192,912 - 52,334,734 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2354,729,121 - 54,757,667 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IL1R1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1145,781,486 - 5,852,872 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl145,781,479 - 5,855,942 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041173,465,069 - 173,539,878 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000008035   ⟹   ENSHGLP00000007947
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247496,708,522 - 6,739,871 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000008036   ⟹   ENSHGLP00000007948
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247496,708,522 - 6,739,871 (+)Ensembl
RefSeq Acc Id: XM_004844463   ⟹   XP_004844520
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247496,661,144 - 6,737,988 (+)NCBI
RefSeq Acc Id: XM_021258120   ⟹   XP_021113779
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247496,661,144 - 6,737,988 (+)NCBI
RefSeq Acc Id: XM_021258121   ⟹   XP_021113780
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247496,698,042 - 6,737,988 (+)NCBI
RefSeq Acc Id: XM_021258122   ⟹   XP_021113781
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247496,661,143 - 6,737,988 (+)NCBI
RefSeq Acc Id: XM_021258123   ⟹   XP_021113782
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247496,661,142 - 6,737,988 (+)NCBI
RefSeq Acc Id: XM_021258124   ⟹   XP_021113783
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247496,720,596 - 6,737,988 (+)NCBI
RefSeq Acc Id: XM_021258125   ⟹   XP_021113784
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247496,720,595 - 6,737,988 (+)NCBI
RefSeq Acc Id: XP_021113782   ⟸   XM_021258123
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021113781   ⟸   XM_021258122
- Peptide Label: isoform X3
- UniProtKB: G5C8W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004844520   ⟸   XM_004844463
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JCQ7 (UniProtKB/TrEMBL),   G5C8W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113779   ⟸   XM_021258120
- Peptide Label: isoform X2
- UniProtKB: G5C8W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113780   ⟸   XM_021258121
- Peptide Label: isoform X2
- UniProtKB: G5C8W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113784   ⟸   XM_021258125
- Peptide Label: isoform X6
RefSeq Acc Id: XP_021113783   ⟸   XM_021258124
- Peptide Label: isoform X5
Ensembl Acc Id: ENSHGLP00000007947   ⟸   ENSHGLT00000008035
Ensembl Acc Id: ENSHGLP00000007948   ⟸   ENSHGLT00000008036


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005757 Ensembl, ENTREZGENE
  ENSHGLG00100039957 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000008035 ENTREZGENE
  ENSHGLT00100055580 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.40.50.10140 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  IL-1_rcpt_fam UniProtKB/TrEMBL
  IL-1_rcpt_I-typ UniProtKB/TrEMBL
  IL-1_rcpt_I/II-typ UniProtKB/TrEMBL
  TIR_dom UniProtKB/TrEMBL
  Toll_tir_struct_dom_sf UniProtKB/TrEMBL
KEGG Report hgl:101711273 UniProtKB/TrEMBL
NCBI Gene Il1r1 ENTREZGENE
PANTHER INTERLEUKIN-1 RECEPTOR TYPE 1 UniProtKB/TrEMBL
  PTHR11890 UniProtKB/TrEMBL
Pfam Ig_2 UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
  TIR UniProtKB/TrEMBL
PRINTS INTRLEUKN1R1 UniProtKB/TrEMBL
  INTRLKN1R12F UniProtKB/TrEMBL
  INTRLKN1R1F UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  TIR UniProtKB/TrEMBL
SMART SM00409 UniProtKB/TrEMBL
  TIR UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF52200 UniProtKB/TrEMBL
UniProt A0A0P6JCQ7 ENTREZGENE, UniProtKB/TrEMBL
  G5C8W2 ENTREZGENE, UniProtKB/TrEMBL