PDGFB (platelet derived growth factor subunit B) - Rat Genome Database

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Gene: PDGFB (platelet derived growth factor subunit B) Chlorocebus sabaeus
Analyze
Symbol: PDGFB
Name: platelet derived growth factor subunit B
RGD ID: 18492978
Description: ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); blood vessel development (ortholog); blood vessel morphogenesis (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; sphingosine 1-phosphate signaling pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); AIDS Dementia Complex (ortholog); Alzheimer's disease (ortholog); FOUND IN basolateral plasma membrane (ortholog); cytoplasm (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: platelet-derived growth factor subunit B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11921,865,792 - 21,888,068 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1921,863,768 - 21,886,395 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045103,877,990 - 103,890,183 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 62 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PDGFBGreen MonkeyAIDS Dementia Complex  ISOPDGFB (Homo sapiens)9068941 RGDPMID:21368226 and REF_RGD_ID:6482787
PDGFBGreen MonkeyAlzheimer's disease  ISOPDGFB (Homo sapiens)9068941protein:increased expression:plasma:RGDPMID:22279551 and REF_RGD_ID:10449445
PDGFBGreen Monkeyasthma  ISOPdgfb (Mus musculus)9068941protein: increased expressionRGDPMID:21216974 and REF_RGD_ID:6483071
PDGFBGreen Monkeyasthma  ISOPdgfb (Rattus norvegicus)9068941 RGDPMID:21216974 and REF_RGD_ID:6483071
PDGFBGreen Monkeybackground diabetic retinopathy  ISOPDGFB (Homo sapiens)9068941protein:decreased expression:vitreous:RGDPMID:19799585 and REF_RGD_ID:10449447
PDGFBGreen MonkeyBrain Hypoxia-Ischemia  ISOPdgfb (Rattus norvegicus)9068941 RGDPMID:10215166 and REF_RGD_ID:10449494
PDGFBGreen MonkeyBrain Injuries  ISOPdgfb (Rattus norvegicus)9068941mRNA:increased expression:cerebral cortex and hippocampusRGDPMID:9645955 and REF_RGD_ID:11084932
PDGFBGreen Monkeycholestasis  ISOPdgfb (Rattus norvegicus)9068941mRNA more ...RGDPMID:10424289 and REF_RGD_ID:10449495
PDGFBGreen Monkeychoriocarcinoma  ISOPDGFB (Homo sapiens)9068941mRNA:increased expression:mononuclear cytotrophoblast cellRGDPMID:8504434 and REF_RGD_ID:2292200
PDGFBGreen MonkeyChronic Allograft Nephropathy  ISOPdgfb (Rattus norvegicus)9068941mRNA:increased expression:kidney:RGDPMID:15785371 and REF_RGD_ID:10449491
PDGFBGreen MonkeyChronic Allograft Nephropathy  ISOPdgfb (Rattus norvegicus)9068941 RGDPMID:11889420 and REF_RGD_ID:11080974
PDGFBGreen Monkeyclear cell renal cell carcinoma disease_progressionISOPDGFB (Homo sapiens)9068941 RGDPMID:23879920 more ...
PDGFBGreen MonkeyCOVID-19 severityISOPDGFB (Homo sapiens)9068941protein:increased expression:plasma (human)RGDPMID:31986264 and REF_RGD_ID:30309212
PDGFBGreen MonkeyDiabetic Nephropathies  ISOPDGFB (Homo sapiens)9068941associated with Diabetes Mellitus and Non-Insulin DependentRGDPMID:15067514 and REF_RGD_ID:2311646
PDGFBGreen MonkeyExperimental Autoimmune Encephalomyelitis treatmentISOPdgfb (Rattus norvegicus)9068941 RGDPMID:16042218 and REF_RGD_ID:11080975
PDGFBGreen MonkeyExperimental Diabetes Mellitus  ISOPdgfb (Mus musculus)9068941mRNA:decreased expression:retinaRGDPMID:14685146 and REF_RGD_ID:2311648
PDGFBGreen MonkeyExperimental Diabetes Mellitus  ISOPdgfb (Rattus norvegicus)9068941mRNA:increased expression:retinaRGDPMID:12606528 and REF_RGD_ID:1581759
PDGFBGreen MonkeyExperimental Diabetes Mellitus  ISOPdgfb (Rattus norvegicus)9068941 RGDPMID:9763208 and REF_RGD_ID:10449499
PDGFBGreen MonkeyExperimental Diabetes Mellitus  ISOPdgfb (Rattus norvegicus)9068941mRNA:increased expression:glomerulusRGDPMID:8094359 and REF_RGD_ID:2311650
PDGFBGreen MonkeyExperimental Diabetes Mellitus  ISOPdgfb (Rattus norvegicus)9068941mRNA: increased expression: mesenteric arteryRGDPMID:21367419 and REF_RGD_ID:6483042
1 to 20 of 62 rows
1 to 9 of 9 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PDGFBGreen Monkeyadenylosuccinase lyase deficiency  ISOPDGFB (Homo sapiens)8554872ClinVar Annotator: match by term: Adenylosuccinate lyase deficiencyClinVarPMID:28492532
PDGFBGreen Monkeydermatofibrosarcoma protuberans  ISOPDGFB (Homo sapiens)8554872ClinVar Annotator: match by term: Dermatofibrosarcoma protuberansClinVarPMID:25741868 and PMID:28492532
PDGFBGreen Monkeyfamilial meningioma  ISOPDGFB (Homo sapiens)8554872ClinVar Annotator: match by term: Familial meningiomaClinVarPMID:25741868
PDGFBGreen Monkeygenetic disease  ISOPDGFB (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
PDGFBGreen Monkeyhereditary breast ovarian cancer syndrome  ISOPDGFB (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary breast ovarian cancer syndromeClinVarPMID:25741868
PDGFBGreen MonkeyIdiopathic Basal Ganglia Calcification 1  ISOPDGFB (Homo sapiens)8554872ClinVar Annotator: match by term: Idiopathic basal ganglia calcification 1ClinVarPMID:25741868
PDGFBGreen MonkeyIdiopathic Basal Ganglia Calcification 5  ISOPDGFB (Homo sapiens)8554872ClinVar Annotator: match by term: Basal ganglia calcification more ...ClinVarPMID:20301594 more ...
PDGFBGreen Monkeymeningioma  ISOPDGFB (Homo sapiens)8554872ClinVar Annotator: match by term: MeningiomaClinVarPMID:2212004 more ...
PDGFBGreen MonkeyRubinstein-Taybi syndrome  ISOPDGFB (Homo sapiens)8554872ClinVar Annotator: match by term: Rubinstein-Taybi syndrome 2ClinVarPMID:28492532
1 to 9 of 9 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PDGFBGreen Monkeybasal ganglia disease  ISOPDGFB (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:25938945
PDGFBGreen Monkeycalcinosis  ISOPDGFB (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:25938945
PDGFBGreen Monkeyessential thrombocythemia  ISOPDGFB (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:15682418
PDGFBGreen MonkeyFibrosis  ISOPDGFB (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:22004089
PDGFBGreen MonkeyGingival Hyperplasia  ISOPDGFB (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:8708960
PDGFBGreen Monkeyhepatocellular carcinoma  ISOPDGFB (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:20506153
PDGFBGreen Monkeypulmonary fibrosis  ISOPDGFB (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:15286697
PDGFBGreen Monkeyretinal disease  ISOPDGFB (Homo sapiens)9068941CTD Direct Evidence: therapeuticCTDPMID:11840346
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PDGFBGreen Monkeyfamilial meningioma  ISOPDGFB (Homo sapiens)7240710 OMIM 
PDGFBGreen MonkeyIdiopathic Basal Ganglia Calcification 5  ISOPDGFB (Homo sapiens)7240710 OMIM 


Biological Process
1 to 20 of 115 rows

  
Object Symbol
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Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PDGFBGreen Monkeyactin cytoskeleton organization acts_upstream_of_or_withinISOPdgfb (Mus musculus)9068941 PMID:12176888MGIPMID:12176888
PDGFBGreen Monkeyactin cytoskeleton organization acts_upstream_of_or_withinISOMGI:13494829068941 PMID:16456542MGIPMID:16456542
PDGFBGreen Monkeyblood vessel development involved_inISOPdgfb (Mus musculus)9068941 PMID:10375497UniProtPMID:10375497
PDGFBGreen Monkeyblood vessel morphogenesis acts_upstream_of_or_withinISOPdgfb (Mus musculus)9068941 PMID:15919073MGIPMID:15919073
PDGFBGreen Monkeyblood vessel morphogenesis acts_upstream_of_or_withinISOMGI:982949068941 PMID:15919073MGIPMID:15919073
PDGFBGreen Monkeybranching involved in salivary gland morphogenesis acts_upstream_of_or_withinISOPdgfb (Mus musculus)9068941 PMID:18559345MGIPMID:18559345
PDGFBGreen Monkeycell chemotaxis involved_inIEAUniProtKB:P01127 and ensembl:ENSP00000330382150520179 EnsemblGO_REF:0000107
PDGFBGreen Monkeycell migration acts_upstream_ofISOMGI:973069068941 PMID:16644864MGIPMID:16644864
PDGFBGreen Monkeycell projection assembly acts_upstream_of_or_withinISOPdgfb (Mus musculus)9068941 PMID:12176888MGIPMID:12176888
PDGFBGreen Monkeycellular response to angiotensin  ISOPdgfb (Rattus norvegicus)9068941 RGDPMID:10506481 and REF_RGD_ID:10449486
PDGFBGreen Monkeycellular response to growth factor stimulus involved_inIEAUniProtKB:P01127 and ensembl:ENSP00000330382150520179 EnsemblGO_REF:0000107
PDGFBGreen Monkeycellular response to mechanical stimulus  ISOPdgfb (Rattus norvegicus)9068941 RGDPMID:7653578 and REF_RGD_ID:10449502
PDGFBGreen Monkeycellular response to mycophenolic acid involved_inISOPdgfb (Rattus norvegicus)9068941PMID:18723570UniProtPMID:18723570 and REF_RGD_ID:8553351
PDGFBGreen Monkeycellular response to platelet-derived growth factor stimulus involved_inISOPdgfb (Mus musculus)9068941 PMID:28867608BHF-UCLPMID:28867608
PDGFBGreen Monkeyembryonic placenta development involved_inISOPdgfb (Mus musculus)9068941 PMID:15084468UniProtPMID:15084468
PDGFBGreen Monkeyendothelial cell proliferation acts_upstream_ofISOMGI:973069068941 PMID:16644864MGIPMID:16644864
PDGFBGreen Monkeyepithelial cell proliferation involved in salivary gland morphogenesis acts_upstream_of_or_withinISOPdgfb (Mus musculus)9068941 PMID:18559345MGIPMID:18559345
PDGFBGreen Monkeyeye photoreceptor cell development acts_upstream_of_or_withinISOMGI:26705749068941 PMID:25224828MGIPMID:25224828
PDGFBGreen Monkeyfibroblast growth factor receptor signaling pathway acts_upstream_ofISOPdgfb (Mus musculus)9068941 PMID:18559345MGIPMID:18559345
PDGFBGreen Monkeyfibroblast migration acts_upstream_ofISOMGI:13494829068941 PMID:16456542MGIPMID:16456542
1 to 20 of 115 rows

Cellular Component
1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PDGFBGreen Monkeybasolateral plasma membrane located_inISOPdgfb (Rattus norvegicus)9068941PMID:10550325UniProtPMID:10550325 and REF_RGD_ID:8554477
PDGFBGreen Monkeycell surface located_inIEAUniProtKB:P01127 and ensembl:ENSP00000330382150520179 EnsemblGO_REF:0000107
PDGFBGreen Monkeycytoplasm located_inISOPdgfb (Rattus norvegicus)9068941PMID:10550325UniProtPMID:10550325 and REF_RGD_ID:8554477
PDGFBGreen Monkeycytoplasm located_inISOPdgfb (Rattus norvegicus)9068941PMID:10802145UniProtPMID:10802145 and REF_RGD_ID:2311654
PDGFBGreen Monkeydendrite  ISOPdgfb (Rattus norvegicus)9068941 RGDPMID:14980813 and REF_RGD_ID:1581758
PDGFBGreen Monkeyextracellular region located_inIEAUniProtKB-KW:KW-0964150520179 UniProtGO_REF:0000043
PDGFBGreen Monkeyextracellular region located_inIEAUniProtKB-SubCell:SL-0243150520179 UniProtGO_REF:0000044
PDGFBGreen Monkeyextracellular space  ISOPdgfb (Rattus norvegicus)9068941 RGDPMID:9072322 and REF_RGD_ID:10449493
PDGFBGreen Monkeyextracellular space located_inIEAPANTHER:PTN000180455150520179 TreeGrafterGO_REF:0000118
PDGFBGreen Monkeymembrane located_inIEAInterPro:IPR000072 and InterPro:IPR006782150520179 InterProGO_REF:0000002
PDGFBGreen Monkeyneuronal cell body  ISOPdgfb (Rattus norvegicus)9068941 RGDPMID:7922556 and REF_RGD_ID:10449483
PDGFBGreen Monkeyplatelet-derived growth factor complex part_ofIEAUniProtKB:P01127 and ensembl:ENSP00000330382150520179 EnsemblGO_REF:0000107
1 to 12 of 12 rows

Molecular Function
1 to 19 of 19 rows

  
Object Symbol
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Term
Qualifier
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Reference
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Original Reference(s)
PDGFBGreen Monkeychemoattractant activity enablesIEAUniProtKB:P01127 and ensembl:ENSP00000330382150520179 EnsemblGO_REF:0000107
PDGFBGreen Monkeycollagen binding enablesIEAUniProtKB:P01127 and ensembl:ENSP00000330382150520179 EnsemblGO_REF:0000107
PDGFBGreen Monkeygrowth factor activity enablesIEAUniProtKB-KW:KW-0339150520179 UniProtGO_REF:0000043
PDGFBGreen Monkeygrowth factor activity enablesIEAUniProtKB:P01127 and ensembl:ENSP00000330382150520179 EnsemblGO_REF:0000107
PDGFBGreen Monkeygrowth factor activity enablesIEAInterPro:IPR000072 and InterPro:IPR006782150520179 InterProGO_REF:0000002
PDGFBGreen Monkeygrowth factor receptor binding enablesIEAPANTHER:PTN000180455150520179 TreeGrafterGO_REF:0000118
PDGFBGreen Monkeyidentical protein binding enablesIEAUniProtKB:P01127 and ensembl:ENSP00000330382150520179 EnsemblGO_REF:0000107
PDGFBGreen Monkeyplatelet-derived growth factor binding enablesIEAUniProtKB:P01127 and ensembl:ENSP00000330382150520179 EnsemblGO_REF:0000107
PDGFBGreen Monkeyplatelet-derived growth factor receptor binding enablesIEAPANTHER:PTN000180455150520179 TreeGrafterGO_REF:0000118
PDGFBGreen Monkeyplatelet-derived growth factor receptor binding enablesIEAUniProtKB:P01127 and ensembl:ENSP00000330382150520179 EnsemblGO_REF:0000107
PDGFBGreen Monkeyprotein binding enablesISOUniProtKB:Q9P2879068941 PMID:32296183IntActPMID:32296183
PDGFBGreen Monkeyprotein binding enablesISOUniProtKB:P096199068941 PMID:11297552 more ...IntActPMID:11297552 more ...
PDGFBGreen Monkeyprotein binding enablesISOUniProtKB:P09619 and UniProtKB:P162349068941 PMID:10806482 and PMID:7679113IntActPMID:10806482 and PMID:7679113
PDGFBGreen Monkeyprotein binding enablesISOUniProtKB:Q158489068941 PMID:12070119UniProtPMID:12070119
PDGFBGreen Monkeyprotein heterodimerization activity enablesIEAUniProtKB:P01127 and ensembl:ENSP00000330382150520179 EnsemblGO_REF:0000107
PDGFBGreen Monkeyprotein homodimerization activity enablesIEAUniProtKB:P01127 and ensembl:ENSP00000330382150520179 EnsemblGO_REF:0000107
PDGFBGreen Monkeyreceptor ligand activity enablesIEAARBA:ARBA00028558150520179 UniProtGO_REF:0000117
PDGFBGreen Monkeysignaling receptor binding enablesISOPdgfb (Rattus norvegicus)9068941PMID:16014047UniProtPMID:16014047 and REF_RGD_ID:8554459
PDGFBGreen Monkeysuperoxide-generating NADPH oxidase activator activity enablesIEAUniProtKB:P01127 and ensembl:ENSP00000330382150520179 EnsemblGO_REF:0000107
1 to 19 of 19 rows

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
PDGFBGreen Monkeyplatelet-derived growth factor signaling pathway  ISOPDGFB (Homo sapiens)9068941 PIDPID:200149 and PID:200201
PDGFBGreen Monkeysphingosine 1-phosphate signaling pathway  ISOPDGFB (Homo sapiens)9068941 PIDPID:200046 and PID:200085
PMID:22301074   PMID:30032202  



PDGFB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11921,865,792 - 21,888,068 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1921,863,768 - 21,886,395 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045103,877,990 - 103,890,183 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PDGFB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382239,223,359 - 39,244,982 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2239,223,359 - 39,244,982 (-)EnsemblGRCh38hg38GRCh38
GRCh372239,619,364 - 39,640,987 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362237,949,665 - 37,970,936 (-)NCBINCBI36Build 36hg18NCBI36
Build 342237,944,218 - 37,961,419NCBI
Celera2223,421,845 - 23,443,115 (-)NCBICelera
Cytogenetic Map22q13.1ENTREZGENE
HuRef2222,586,719 - 22,607,974 (-)NCBIHuRef
CHM1_12239,578,202 - 39,599,467 (-)NCBICHM1_1
T2T-CHM13v2.02239,694,033 - 39,715,652 (-)NCBIT2T-CHM13v2.0
Pdgfb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,880,066 - 79,899,178 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,880,075 - 79,899,178 (-)EnsemblGRCm39 Ensembl
GRCm381579,995,865 - 80,024,614 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,995,874 - 80,014,977 (-)EnsemblGRCm38mm10GRCm38
MGSCv371579,826,304 - 79,845,238 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361579,823,129 - 79,842,063 (-)NCBIMGSCv36mm8
Celera1582,118,153 - 82,136,874 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.85NCBI
Pdgfb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,419,882 - 113,438,343 (-)NCBIGRCr8
mRatBN7.27111,539,444 - 111,557,984 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,540,345 - 111,557,984 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7113,288,390 - 113,306,033 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,511,934 - 115,529,580 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,481,281 - 115,498,926 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07121,215,458 - 121,233,092 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,214,628 - 121,232,741 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07121,205,505 - 121,223,140 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47118,244,385 - 118,262,021 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17118,279,553 - 118,295,832 (-)NCBI
Celera7107,869,873 - 107,887,412 (-)NCBICelera
Cytogenetic Map7q34NCBI
Pdgfb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541325,148,062 - 25,166,987 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541325,150,702 - 25,166,987 (-)NCBIChiLan1.0ChiLan1.0
PDGFB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22349,068,209 - 49,089,303 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12251,759,600 - 51,779,759 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02220,127,223 - 20,148,407 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12237,944,018 - 37,964,883 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2237,944,018 - 37,964,883 (-)Ensemblpanpan1.1panPan2
PDGFB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11025,798,877 - 25,819,422 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1025,798,938 - 25,817,746 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1025,734,794 - 25,753,108 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01026,550,122 - 26,571,489 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1026,551,117 - 26,571,479 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11026,264,832 - 26,283,141 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01026,584,490 - 26,602,860 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01026,760,558 - 26,778,890 (+)NCBIUU_Cfam_GSD_1.0
Pdgfb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049459,343,420 - 9,358,195 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364922,353,841 - 2,368,573 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364922,353,840 - 2,368,573 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDGFB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl58,986,462 - 9,007,435 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa10.256,330,898 - 6,333,239 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pdgfb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247529,072,512 - 9,088,593 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247529,072,471 - 9,088,289 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in PDGFB
321 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20



Ensembl Acc Id: ENSCSAT00000004398   ⟹   ENSCSAP00000002652
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1921,863,768 - 21,886,395 (-)Ensembl
RefSeq Acc Id: XM_038007421   ⟹   XP_037863349
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666045103,877,990 - 103,890,183 (+)NCBI
Protein RefSeqs XP_037863349 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002652.1
Ensembl Acc Id: ENSCSAP00000002652   ⟸   ENSCSAT00000004398
RefSeq Acc Id: XP_037863349   ⟸   XM_038007421



1 to 18 of 18 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000006359 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004398.1 UniProtKB/TrEMBL
Gene3D-CATH 2.10.90.10 UniProtKB/TrEMBL
InterPro Cystine-knot_cytokine UniProtKB/TrEMBL
  PD_growth_factor_CS UniProtKB/TrEMBL
  PDGF/VEGF_dom UniProtKB/TrEMBL
  PDGF_N UniProtKB/TrEMBL
KEGG Report csab:103223339 UniProtKB/TrEMBL
NCBI Gene PDGFB ENTREZGENE
PANTHER PLATELET-DERIVED GROWTH FACTOR UniProtKB/TrEMBL
  PTHR11633:SF2 UniProtKB/TrEMBL
Pfam PDGF UniProtKB/TrEMBL
  PDGF_N UniProtKB/TrEMBL
PROSITE PDGF_1 UniProtKB/TrEMBL
  PDGF_2 UniProtKB/TrEMBL
SMART PDGF UniProtKB/TrEMBL
Superfamily-SCOP SSF57501 UniProtKB/TrEMBL
UniProt A0A0D9R213_CHLSB UniProtKB/TrEMBL
1 to 18 of 18 rows