WRAP53 (WD repeat containing antisense to TP53) - Rat Genome Database

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Gene: WRAP53 (WD repeat containing antisense to TP53) Homo sapiens
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Symbol: WRAP53
Name: WD repeat containing antisense to TP53
RGD ID: 1605665
HGNC Page HGNC:25522
Description: Enables several functions, including RNA folding chaperone; telomerase RNA binding activity; and ubiquitin protein ligase binding activity. Involved in several processes, including RNA localization to Cajal body; positive regulation of double-strand break repair; and telomere organization. Located in Cajal body; cytosol; and site of double-strand break. Part of telomerase holoenzyme complex. Implicated in autosomal recessive dyskeratosis congenita 3; colorectal cancer; head and neck squamous cell carcinoma; lung non-small cell carcinoma; and ovarian cancer. Biomarker of breast cancer; carcinoma (multiple); colorectal cancer; ovarian cancer; and rectal benign neoplasm.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: DKCB3; FLJ10385; TCAB1; telomerase Cajal body protein 1; WD repeat containing, antisense to TP53; WD repeat domain 79; WD repeat-containing protein 79; WD repeat-containing protein WRAP53; WD-encoding RNA antisense to p53; WD40 protein Wrap53; WD40 repeat-containing protein antisense to TP53; WD40 repeat-containing protein encoding RNA antisense to p53; WDR79; WRAP53beta
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,686,071 - 7,703,502 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,686,071 - 7,703,502 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,589,389 - 7,606,820 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,532,520 - 7,547,544 (+)NCBINCBI36Build 36hg18NCBI36
Celera177,615,750 - 7,633,180 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,482,804 - 7,500,156 (+)NCBIHuRef
CHM1_1177,598,524 - 7,615,973 (+)NCBICHM1_1
T2T-CHM13v2.0177,590,175 - 7,607,622 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
WRAP53HumanAutosomal Recessive Dyskeratosis Congenita  IAGP 21081678DNA:mutations:exons:RGD 
WRAP53Humanbreast cancer  IEP 11251665protein:altered localization:nucleus and cytoplasm:RGD 
WRAP53Humanbreast cancer no_associationIAGP 21081531DNA:SNP: : rs2287499(human)RGD 
WRAP53Humancolorectal cancer  IMP 21081520 RGD 
WRAP53Humancolorectal cancer onsetIEP 21081528 RGD 
WRAP53Humanesophagus squamous cell carcinoma disease_progressionIEP 21081532 RGD 
WRAP53Humanglottis squamous cell carcinoma disease_progressionIEP 21081521 RGD 
WRAP53Humanhead and neck squamous cell carcinoma treatmentIEP 21081529 RGD 
WRAP53Humanhead and neck squamous cell carcinoma treatmentIMP 21081533 RGD 
WRAP53Humanhepatocellular carcinoma  IEP 11096781RNA:increased expression:liver:RGD 
WRAP53Humanlung adenocarcinoma severityIEP 21081522 RGD 
WRAP53Humanlung non-small cell carcinoma disease_progressionIDA 21081519DNA:hypermethylation:promoterRGD 
WRAP53Humanlung non-small cell carcinoma disease_progressionIEP 21081513RNA:increased expression:lungRGD 
WRAP53HumanLymphatic Metastasis  IEP 21081532associated with esophagus squamous cell carcinomaRGD 
WRAP53HumanLymphatic Metastasis  IEP 21081513associated with lung non-small cell carcinomaRGD 
WRAP53Humannasopharynx carcinoma  IEP 21081524associated with Epstein-Barr Virus Infections and protein:increased expression:nasopharynx epitheliumRGD 
WRAP53Humanovarian cancer susceptibilityIAGP 21081534DNA:SNPs: :RGD 
WRAP53Humanovarian cancer disease_progressionIEP 11522675 RGD 
WRAP53Humanrectal benign neoplasm treatmentIEP 21081677 RGD 
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WRAP53HumanAutosomal Recessive Dyskeratosis Congenita  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Dyskeratosis Congenita and RecessiveClinVar 
WRAP53HumanAutosomal Recessive Dyskeratosis Congenita  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Dyskeratosis Congenita and RecessiveClinVarPMID:25741868 and PMID:28492532
WRAP53HumanAutosomal Recessive Dyskeratosis Congenita  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Dyskeratosis Congenita and RecessiveClinVarPMID:17576681 more ...
WRAP53Humanautosomal recessive dyskeratosis congenita 3  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Dyskeratosis congenita and autosomal recessive 3ClinVarPMID:17683073 more ...
WRAP53Humanautosomal recessive dyskeratosis congenita 3  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:25741868
WRAP53Humanautosomal recessive dyskeratosis congenita 3  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:25741868 and PMID:28492532
WRAP53Humanautosomal recessive dyskeratosis congenita 3  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:28492532
WRAP53Humanautosomal recessive dyskeratosis congenita 3  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Dyskeratosis congenita and autosomal recessive 3ClinVar 
WRAP53Humanautosomal recessive dyskeratosis congenita 3  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Dyskeratosis congenita and autosomal recessive 3ClinVarPMID:25741868 more ...
WRAP53Humanautosomal recessive dyskeratosis congenita 3  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Dyskeratosis congenita and autosomal recessive 3ClinVarPMID:20301779 and PMID:21205863
WRAP53Humanautosomal recessive dyskeratosis congenita 3  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Dyskeratosis congenita and autosomal recessive 3ClinVarPMID:24033266 more ...
WRAP53Humanautosomal recessive dyskeratosis congenita 3  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Dyskeratosis congenita and autosomal recessive 3ClinVarPMID:20301779 more ...
WRAP53Humanautosomal recessive dyskeratosis congenita 3  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Dyskeratosis congenita and autosomal recessive 3ClinVarPMID:20301779 more ...
WRAP53Humanautosomal recessive dyskeratosis congenita 3  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Dyskeratosis congenita and autosomal recessive 3ClinVarPMID:28492532 and PMID:34573280
WRAP53Humanautosomal recessive dyskeratosis congenita 3  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Dyskeratosis congenita and autosomal recessive 3ClinVarPMID:21205863 more ...
WRAP53Humanbreast cancer  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Malignant tumor of breastClinVar 
WRAP53Humancommon variable immunodeficiency  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Common variable immunodeficiencyClinVarPMID:28492532
WRAP53Humancongenital myasthenic syndrome 2A  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital myasthenic syndrome 2AClinVarPMID:28492532
WRAP53HumanDiamond-Blackfan anemia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Diamond-Blackfan anemiaClinVarPMID:20522432 more ...
WRAP53Humandyskeratosis congenita  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Dyskeratosis congenitaClinVarPMID:17683073 more ...
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WRAP53HumanBody Weight  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:31243981
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WRAP53Humanautosomal recessive dyskeratosis congenita 3  IAGP 7240710 OMIM 

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WRAP53Human1,2-dimethylhydrazine increases expressionISOWrap53 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of WRAP53 mRNACTDPMID:22206623
WRAP53Human2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of WRAP53 mRNACTDPMID:22574217
WRAP53Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISOWrap53 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of WRAP53 mRNACTDPMID:33387578
WRAP53Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOWrap53 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of WRAP53 mRNACTDPMID:32109520
WRAP53Human2,4-dinitrotoluene affects expressionISOWrap53 (Rattus norvegicus)64804642 and 4-dinitrotoluene affects the expression of WDR79 mRNACTDPMID:21346803
WRAP53Human2,6-dinitrotoluene affects expressionISOWrap53 (Rattus norvegicus)64804642 and 6-dinitrotoluene affects the expression of WDR79 mRNACTDPMID:21346803
WRAP53Human3-isobutyl-1-methyl-7H-xanthine multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of WRAP53 mRNACTDPMID:28628672
WRAP53Human5-methylcytosine multiple interactionsEXP 6480464[Pesticides results in increased methylation of WRAP53 gene] which results in increased abundance of 5-MethylcytosineCTDPMID:31243981
WRAP53Humanaflatoxin B1 increases expressionISOWrap53 (Mus musculus)6480464Aflatoxin B1 results in increased expression of WDR79 mRNACTDPMID:19770486
WRAP53Humanantirheumatic drug decreases expressionEXP 6480464Antirheumatic Agents results in decreased expression of WRAP53 mRNACTDPMID:24449571
WRAP53Humanatrazine decreases expressionEXP 6480464Atrazine results in decreased expression of WRAP53 mRNACTDPMID:22378314
WRAP53Humanbenzo[a]pyrene increases expressionEXP 6480464Benzo(a)pyrene results in increased expression of WRAP53 mRNACTDPMID:22316170
WRAP53Humanbisphenol A decreases expressionISOWrap53 (Rattus norvegicus)6480464bisphenol A results in decreased expression of WRAP53 mRNACTDPMID:25181051
WRAP53Humanbisphenol A multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of WRAP53 mRNACTDPMID:28628672
WRAP53Humancadmium dichloride decreases expressionEXP 6480464Cadmium Chloride results in decreased expression of WRAP53 mRNACTDPMID:38568856
WRAP53Humancaffeine affects phosphorylationEXP 6480464Caffeine affects the phosphorylation of WRAP53 proteinCTDPMID:35688186
WRAP53Humancalcitriol decreases expressionEXP 6480464Calcitriol results in decreased expression of WRAP53 mRNACTDPMID:21592394
WRAP53Humancalcitriol multiple interactionsEXP 6480464[Testosterone co-treated with Calcitriol] results in decreased expression of WRAP53 mRNACTDPMID:21592394
WRAP53Humancoumarin increases phosphorylationEXP 6480464coumarin results in increased phosphorylation of WRAP53 proteinCTDPMID:35688186
WRAP53Humancoumestrol increases expressionEXP 6480464Coumestrol results in increased expression of WDR79 mRNACTDPMID:19167446

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Biological Process
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WRAP53HumanCajal body organization involved_inIMP 150520179 PMID:21072240UniProtPMID:21072240
WRAP53HumanCajal body organization involved_inIBAFB:FBgn0031782 more ...150520179 GO_CentralGO_REF:0000033
WRAP53HumanDNA damage response involved_inIEAUniProtKB-KW:KW-0227150520179 UniProtGO_REF:0000043
WRAP53HumanDNA repair involved_inIEAUniProtKB-KW:KW-0234150520179 UniProtGO_REF:0000043
WRAP53Humanpositive regulation of DNA repair involved_inIDA 150520179 PMID:25512560UniProtPMID:25512560
WRAP53Humanpositive regulation of double-strand break repair involved_inIDA 150520179 PMID:27715493UniProtPMID:27715493
WRAP53Humanpositive regulation of double-strand break repair via homologous recombination involved_inIDA 150520179 PMID:25512560UniProtPMID:25512560
WRAP53Humanpositive regulation of double-strand break repair via nonhomologous end joining involved_inIDA 150520179 PMID:25512560UniProtPMID:25512560
WRAP53Humanpositive regulation of establishment of protein localization to telomere involved_inIMP 150520179 PMID:25467444BHF-UCLPMID:25467444
WRAP53Humanpositive regulation of telomere maintenance via telomerase acts_upstream_ofIDA 150520179 PMID:23685356BHF-UCLPMID:23685356
WRAP53Humanprotein localization to Cajal body involved_inIDA 150520179 PMID:22547674 and PMID:25467444BHF-UCLPMID:22547674 and PMID:25467444
WRAP53HumanRNA folding involved_inIDA 150520179 PMID:29804836UniProtPMID:29804836
WRAP53HumanscaRNA localization to Cajal body involved_inIMP 150520179 PMID:25467444BHF-UCLPMID:25467444
WRAP53HumanscaRNA localization to Cajal body involved_inIDA 150520179 PMID:19285445UniProtPMID:19285445
WRAP53Humantelomerase RNA localization to Cajal body involved_inIMP 150520179 PMID:25467444BHF-UCLPMID:25467444
WRAP53Humantelomere formation via telomerase involved_inIMP 150520179 PMID:19179534UniProtPMID:19179534
WRAP53Humantelomere maintenance via telomerase acts_upstream_ofTAS 150520179 PMID:25467444BHF-UCLPMID:25467444
WRAP53Humantelomere maintenance via telomerase involved_inIDA 150520179 PMID:29695869 and PMID:29804836UniProtPMID:29695869 and PMID:29804836
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Cellular Component
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WRAP53HumanCajal body located_inIDA 150520179 PMID:19179534 more ...UniProtPMID:19179534 more ...
WRAP53HumanCajal body is_active_inIBAFB:FBgn0031782 more ...150520179 GO_CentralGO_REF:0000033
WRAP53HumanCajal body located_inIMP 150520179 PMID:25467444BHF-UCLPMID:25467444
WRAP53HumanCajal body located_inIEAUniProtKB-SubCell:SL-0031150520179 UniProtGO_REF:0000044
WRAP53Humanchromosome located_inIEAUniProtKB-KW:KW-0158150520179 UniProtGO_REF:0000043
WRAP53Humanchromosome located_inIEAUniProtKB-SubCell:SL-0468150520179 UniProtGO_REF:0000044
WRAP53Humanchromosome, telomeric region located_inIEAUniProtKB-SubCell:SL-0276150520179 UniProtGO_REF:0000044
WRAP53Humanchromosome, telomeric region located_inIEAUniProtKB-KW:KW-0779150520179 UniProtGO_REF:0000043
WRAP53Humancytosol located_inIDA 150520179 HPAGO_REF:0000052
WRAP53Humannuclear body located_inIDA 150520179 HPAGO_REF:0000052
WRAP53Humannucleoplasm located_inTAS 150520179 ReactomeReactome:R-HSA-163090 more ...
WRAP53Humannucleoplasm located_inIDA 150520179 HPAGO_REF:0000052
WRAP53Humannucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
WRAP53Humansite of double-strand break located_inIDA 150520179 PMID:25512560 more ...UniProtPMID:25512560 more ...
WRAP53Humantelomerase holoenzyme complex part_ofIDA 150520179 PMID:19179534 more ...UniProtPMID:19179534 more ...
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Molecular Function
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WRAP53Humanhistone binding enablesIPIUniProtKB:P16104150520179 PMID:26734725 and PMID:27715493UniProtPMID:26734725 and PMID:27715493
WRAP53Humanidentical protein binding enablesIPIUniProtKB:Q9BUR4150520179 PMID:21072240IntActPMID:21072240
WRAP53Humanprotein binding enablesIPIUniProtKB:P38432 and UniProtKB:Q16637150520179 PMID:21072240IntActPMID:21072240
WRAP53Humanprotein binding enablesIPIUniProtKB:O60832 and UniProtKB:P40227150520179 PMID:25467444BHF-UCLPMID:25467444
WRAP53Humanprotein binding enablesIPIUniProtKB:Q08AM6 and UniProtKB:Q5T6F2150520179 PMID:32296183IntActPMID:32296183
WRAP53Humanprotein binding enablesIPIUniProtKB:O14746 and UniProtKB:O60832150520179 PMID:19179534UniProtPMID:19179534
WRAP53Humanprotein binding enablesIPIUniProtKB:O77622150520179 PMID:25467444IntActPMID:25467444
WRAP53Humanprotein carrier chaperone enablesIMP 150520179 PMID:25467444BHF-UCLPMID:25467444
WRAP53Humanprotein-containing complex binding enablesIDA 150520179 PMID:25467444BHF-UCLPMID:25467444
WRAP53Humanprotein-folding chaperone binding enablesIPIUniProtKB:P17987 more ...150520179 PMID:25467444BHF-UCLPMID:25467444
WRAP53HumanRNA binding enablesIDA 150520179 PMID:19179534UniProtPMID:19179534
WRAP53HumanRNA binding enablesIBAFB:FBgn0031782 more ...150520179 GO_CentralGO_REF:0000033
WRAP53HumanRNA binding enablesIEAUniProtKB-KW:KW-0694150520179 UniProtGO_REF:0000043
WRAP53HumanRNA binding enablesIPIRNAcentral:URS00004416C5_9606150520179 PMID:20351177BHF-UCLPMID:20351177
WRAP53HumanRNA folding chaperone enablesIDA 150520179 PMID:19179534 and PMID:29804836UniProtPMID:19179534 and PMID:29804836
WRAP53HumanRNA folding chaperone enablesIEAUniProtKB:Q8VC51 and ensembl:ENSMUSP00000047825150520179 EnsemblGO_REF:0000107
WRAP53Humantelomerase RNA binding enablesIDA 150520179 PMID:22547674 more ...UniProtPMID:22547674 more ...
WRAP53Humantelomerase RNA binding enablesIPIRNAcentral:URS00004A7003_9606150520179 PMID:20351177BHF-UCLPMID:20351177
WRAP53Humantelomerase RNA binding enablesIPIRNAcentral:URS00004416C5_9606 and RNAcentral:URS00004A7003_9606150520179 PMID:25467444BHF-UCLPMID:25467444
WRAP53Humanubiquitin protein ligase binding enablesIPIUniProtKB:O76064150520179 PMID:25512560 and PMID:27715493UniProtPMID:25512560 and PMID:27715493
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WRAP53HumanAbnormal blistering of the skin  IAGP 8699517 HPOORPHA:1775
WRAP53HumanAbnormal eyebrow morphology  IAGP 8699517 HPOORPHA:1775
WRAP53HumanAbnormal eyelash morphology  IAGP 8699517 HPOORPHA:1775
WRAP53HumanAbnormal fingernail morphology  IAGP 8699517 HPOORPHA:1775
WRAP53HumanAbnormal morphology of female internal genitalia  IAGP 8699517 HPOORPHA:1775
WRAP53HumanAbnormal testis morphology  IAGP 8699517 HPOORPHA:1775
WRAP53HumanAbnormality of coagulation  IAGP 8699517 HPOORPHA:1775
WRAP53HumanAbnormality of neutrophils  IAGP 8699517 HPOORPHA:1775
WRAP53HumanAbnormality of skin pigmentation  IAGP 8699517 HPOMIM:613988
WRAP53HumanAbnormality of the dentition  IAGP 8699517 HPOORPHA:1775
WRAP53HumanAbnormality of the pharynx  IAGP 8699517 HPOORPHA:1775
WRAP53HumanAlopecia  IAGP 8699517 HPOORPHA:1775
WRAP53HumanAnemia  IAGP 8699517 HPOORPHA:1775
WRAP53HumanAnorectal anomaly  IAGP 8699517 HPOORPHA:1775
WRAP53HumanAplasia/Hypoplasia of the skin  IAGP 8699517 HPOORPHA:1775
WRAP53HumanAplastic/hypoplastic toenail  IAGP 8699517 HPOORPHA:1775
WRAP53HumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:613988
WRAP53HumanAvascular necrosis  IAGP 8699517 HPOORPHA:1775
WRAP53HumanBlepharitis  IAGP 8699517 HPOORPHA:1775
WRAP53HumanBone marrow hypocellularity  IAGP 8699517 HPOMIM:613988
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WRAP53HumanBreast carcinoma  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Breast cancerClinVar 
WRAP53HumanCongenital hypoplastic anemia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital hypoplastic anemiaClinVarPMID:20522432 more ...

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Reference Title
Reference Citation
1. Nuclear expression of WRAP53β is associated with a positive response to radiotherapy and improved overall survival in patients with head and neck squamous cell carcinoma. Garvin S, etal., Oral Oncol. 2015 Jan;51(1):24-30. doi: 10.1016/j.oraloncology.2014.10.003. Epub 2014 Oct 27.
2. Downregulation of the cancer susceptibility protein WRAP53beta in epithelial ovarian cancer leads to defective DNA repair and poor clinical outcome. Hedstrom E, etal., Cell Death Dis. 2015 Oct 1;6:e1892. doi: 10.1038/cddis.2015.250.
3. Investigation of long noncoding RNAs expression profile as potential serum biomarkers in patients with hepatocellular carcinoma. Kamel MM, etal., Transl Res. 2016 Feb;168:134-45. doi: 10.1016/j.trsl.2015.10.002. Epub 2015 Oct 24.
4. Promoter methylation of Wrap53α, an antisense transcript of p53, is associated with the poor prognosis of patients with non-small cell lung cancer. Kim DS, etal., Oncol Lett. 2018 Nov;16(5):5823-5828. doi: 10.3892/ol.2018.9404. Epub 2018 Sep 5.
5. Association of common WRAP 53 variant with ovarian cancer risk in the Polish population. Mędrek K, etal., Mol Biol Rep. 2013 Mar;40(3):2145-7. doi: 10.1007/s11033-012-2273-9. Epub 2012 Nov 29.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. Expression of WDR79 is associated with TP53 mutation and poor prognosis in surgically resected non-small cell lung cancer. Peng J, etal., J Cancer. 2019 Jun 2;10(13):3046-3053. doi: 10.7150/jca.30587. eCollection 2019.
8. Overexpression of WRAP53 is associated with development and progression of esophageal squamous cell carcinoma. Rao X, etal., PLoS One. 2014 Mar 13;9(3):e91670. doi: 10.1371/journal.pone.0091670. eCollection 2014.
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
12. Single-strand conformational polymorphism analysis of a common single nucleotide variation in WRAP53 gene, rs2287499, and evaluating its association in relation to breast cancer risk and prognosis among Iranian-Azeri population. Sedaie Bonab A, etal., Med Oncol. 2014 Sep;31(9):168. doi: 10.1007/s12032-014-0168-4. Epub 2014 Aug 19.
13. The Sub-Cellular Localization of WRAP53 Has Prognostic Impact in Breast Cancer. Silwal-Pandit L, etal., PLoS One. 2015 Oct 13;10(10):e0139965. doi: 10.1371/journal.pone.0139965. eCollection 2015.
14. TCAB1: a potential target for diagnosis and therapy of head and neck carcinomas. Sun CK, etal., Mol Cancer. 2014 Jul 28;13:180. doi: 10.1186/1476-4598-13-180.
15. WRAP53β, survivin and p16INK4a expression as potential predictors of radiotherapy/chemoradiotherapy response in T2N0-T3N0 glottic laryngeal cancer. Tiefenböck-Hansson K, etal., Oncol Rep. 2017 Oct;38(4):2062-2068. doi: 10.3892/or.2017.5898. Epub 2017 Aug 11.
16. Epstein-Barr virus-induced up-regulation of TCAB1 is involved in the DNA damage response in nasopharyngeal carcinoma. Wang K, etal., Sci Rep. 2017 Jun 12;7(1):3218. doi: 10.1038/s41598-017-03156-3.
17. The prognostic factors and multiple biomarkers in young patients with colorectal cancer. Wang MJ, etal., Sci Rep. 2015 May 27;5:10645. doi: 10.1038/srep10645.
18. Clinical, cellular, and bioinformatic analyses reveal involvement of WRAP53 overexpression in carcinogenesis of lung adenocarcinoma. Yuan XS, etal., Tumour Biol. 2017 Mar;39(3):1010428317694309. doi: 10.1177/1010428317694309.
19. WRAP53 is an independent prognostic factor in rectal cancer- a study of Swedish clinical trial of preoperative radiotherapy in rectal cancer patients. Zhang H, etal., BMC Cancer. 2012 Jul 17;12:294. doi: 10.1186/1471-2407-12-294.
20. Disruption of telomerase trafficking by TCAB1 mutation causes dyskeratosis congenita. Zhong F, etal., Genes Dev. 2011 Jan 1;25(1):11-6. doi: 10.1101/gad.2006411.
1 to 20 of 21 rows
PMID:8125298   PMID:12477932   PMID:14702039   PMID:15302935   PMID:15489334   PMID:17081983   PMID:17683073   PMID:18029348   PMID:18676680   PMID:18978339   PMID:19170196   PMID:19179534  
PMID:19250907   PMID:19285445   PMID:19339270   PMID:19342896   PMID:19571673   PMID:19625176   PMID:19692168   PMID:19797907   PMID:20301779   PMID:20351177   PMID:20360068   PMID:20494116  
PMID:21072240   PMID:21368886   PMID:21441950   PMID:21873635   PMID:22547674   PMID:22939629   PMID:23685356   PMID:23886136   PMID:25416818   PMID:25467444   PMID:25512560   PMID:25854392  
PMID:26170453   PMID:26186194   PMID:26344197   PMID:26496610   PMID:26734725   PMID:27310875   PMID:27525856   PMID:27715493   PMID:28406480   PMID:28502804   PMID:28514442   PMID:28700943  
PMID:28986522   PMID:29509190   PMID:29514627   PMID:29516630   PMID:29695869   PMID:29804836   PMID:29934401   PMID:30463901   PMID:30759234   PMID:31387111   PMID:31527615   PMID:32296183  
PMID:32303682   PMID:32877691   PMID:33028529   PMID:33674555   PMID:33742100   PMID:33961781   PMID:34373451   PMID:35256949   PMID:35559673   PMID:35642155   PMID:35748872   PMID:35831314  
PMID:35914814   PMID:35944360   PMID:36116037   PMID:36244648   PMID:36706151   PMID:37267110  



WRAP53
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,686,071 - 7,703,502 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,686,071 - 7,703,502 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,589,389 - 7,606,820 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,532,520 - 7,547,544 (+)NCBINCBI36Build 36hg18NCBI36
Celera177,615,750 - 7,633,180 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,482,804 - 7,500,156 (+)NCBIHuRef
CHM1_1177,598,524 - 7,615,973 (+)NCBICHM1_1
T2T-CHM13v2.0177,590,175 - 7,607,622 (+)NCBIT2T-CHM13v2.0
Wrap53
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,452,580 - 69,471,076 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,452,584 - 69,471,081 (-)EnsemblGRCm39 Ensembl
GRCm381169,561,754 - 69,580,250 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,561,758 - 69,580,255 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,375,256 - 69,392,826 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,377,949 - 69,395,519 (-)NCBIMGSCv36mm8
Celera1176,524,707 - 76,542,284 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.81NCBI
Wrap53
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,780,873 - 54,797,919 (-)NCBIGRCr8
mRatBN7.21054,282,092 - 54,299,908 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,282,105 - 54,298,929 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1058,944,501 - 58,961,275 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,433,045 - 58,449,818 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01053,940,731 - 53,957,518 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,169,024 - 56,185,800 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,169,025 - 56,185,857 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01055,914,380 - 55,931,438 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,380,914 - 56,398,501 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,394,537 - 56,412,124 (-)NCBI
Celera1053,436,325 - 53,453,155 (-)NCBICelera
Cytogenetic Map10q24NCBI
Wrap53
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554679,225,506 - 9,240,756 (-)NCBIChiLan1.0ChiLan1.0
WRAP53
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,280,889 - 15,298,965 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,246,094 - 17,265,011 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,715,897 - 7,735,873 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,707,220 - 7,723,410 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,707,221 - 7,723,394 (+)Ensemblpanpan1.1panPan2
WRAP53
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,574,153 - 32,586,222 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,574,134 - 32,594,333 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,712,138 - 32,725,180 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,677,789 - 32,690,832 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,678,578 - 32,690,834 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,645,668 - 32,658,710 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,601,891 - 32,614,933 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,780,842 - 32,793,885 (+)NCBIUU_Cfam_GSD_1.0
Wrap53
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,461,298 - 47,478,596 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595936,487 - 952,791 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595936,184 - 952,784 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WRAP53
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,954,669 - 52,968,364 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,954,674 - 52,968,371 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,205,960 - 55,219,648 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WRAP53
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,065,531 - 7,085,590 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl167,066,333 - 7,085,625 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,323,308 - 14,343,301 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wrap53
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,283,984 - 10,296,729 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,283,721 - 10,296,568 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in WRAP53
487 total Variants

1 to 10 of 616 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_001143992.2(WRAP53):c.1192C>T (p.Arg398Trp) single nucleotide variant Dyskeratosis congenita, autosomal recessive 3 [RCV000023966]|Hereditary cancer-predisposing syndrome [RCV003445082]|not provided [RCV001269522] Chr17:7702770 [GRCh38]
Chr17:7606088 [GRCh37]
Chr17:17p13.1
pathogenic|likely pathogenic|conflicting interpretations of pathogenicity
NM_001143992.2(WRAP53):c.1126C>T (p.His376Tyr) single nucleotide variant Dyskeratosis congenita, autosomal recessive 3 [RCV000023967] Chr17:7702514 [GRCh38]
Chr17:7605832 [GRCh37]
Chr17:17p13.1
pathogenic
NM_001143992.2(WRAP53):c.1303G>A (p.Gly435Arg) single nucleotide variant Dyskeratosis congenita, autosomal recessive 3 [RCV000034151]|not provided [RCV003556106] Chr17:7703027 [GRCh38]
Chr17:7606345 [GRCh37]
Chr17:17p13.1
pathogenic|uncertain significance
NM_001143992.2(WRAP53):c.492C>A (p.Phe164Leu) single nucleotide variant Dyskeratosis congenita, autosomal recessive 3 [RCV000034152]|not provided [RCV000439983] Chr17:7689284 [GRCh38]
Chr17:7592602 [GRCh37]
Chr17:17p13.1
pathogenic|likely pathogenic
GRCh38/hg38 17p13.2-13.1(chr17:5732977-8038822)x1 copy number loss See cases [RCV000051043] Chr17:5732977..8038822 [GRCh38]
Chr17:5636297..7942140 [GRCh37]
Chr17:5577021..7882865 [NCBI36]
Chr17:17p13.2-13.1
pathogenic
GRCh38/hg38 17p13.1(chr17:6958978-8335684)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052457]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052457]|See cases [RCV000052457] Chr17:6958978..8335684 [GRCh38]
Chr17:6862297..8239002 [GRCh37]
Chr17:6803021..8179727 [NCBI36]
Chr17:17p13.1
pathogenic
GRCh38/hg38 17p13.2-13.1(chr17:6307904-8842949)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053407]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053407]|See cases [RCV000053407] Chr17:6307904..8842949 [GRCh38]
Chr17:6211224..8746266 [GRCh37]
Chr17:6151948..8686991 [NCBI36]
Chr17:17p13.2-13.1
pathogenic
GRCh38/hg38 17p13.1(chr17:7478195-8435524)x1 copy number loss See cases [RCV000053426] Chr17:7478195..8435524 [GRCh38]
Chr17:7381514..8338842 [GRCh37]
Chr17:7322238..8279567 [NCBI36]
Chr17:17p13.1
pathogenic
NM_001143992.2(WRAP53):c.1510T>C (p.Ser504Pro) single nucleotide variant not provided [RCV000087231] Chr17:7703349 [GRCh38]
Chr17:7606667 [GRCh37]
Chr17:17p13.1
uncertain significance
NM_000546.6(TP53):c.-29+4A>C single nucleotide variant not provided [RCV000115714] Chr17:7687373 [GRCh38]
Chr17:7590691 [GRCh37]
Chr17:17p13.1
uncertain significance
1 to 10 of 616 rows

Predicted Target Of
Summary Value
Count of predictions:3601
Count of miRNA genes:613
Interacting mature miRNAs:707
Transcripts:ENST00000316024, ENST00000396463, ENST00000431639, ENST00000457584, ENST00000463804, ENST00000467699, ENST00000471973, ENST00000498114, ENST00000498311, ENST00000534050
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597031559GWAS1127633_Htestosterone measurement QTL GWAS1127633 (human)4e-09testosterone measurementserum testosterone level (CMO:0000568)1776900017690002Human
597243802GWAS1339876_Hsex hormone-binding globulin measurement QTL GWAS1339876 (human)1e-238sex hormone-binding globulin measurement1776959427695943Human
597245482GWAS1341556_Htestosterone measurement QTL GWAS1341556 (human)4e-22testosterone measurementserum testosterone level (CMO:0000568)1776959427695943Human
597347470GWAS1443544_Hbody fat percentage QTL GWAS1443544 (human)2e-10body fat mass (VT:0010482)body fat percentage (CMO:0000302)1776896807689681Human
597423519GWAS1519593_Htestosterone measurement QTL GWAS1519593 (human)7e-13testosterone measurementserum testosterone level (CMO:0000568)1776955487695549Human
597332719GWAS1428793_HR-6-hydroxywarfarin measurement QTL GWAS1428793 (human)8e-08R-6-hydroxywarfarin measurement1777000667700067Human
597347469GWAS1443543_Hbody fat percentage QTL GWAS1443543 (human)7e-11body fat mass (VT:0010482)body fat percentage (CMO:0000302)1776870567687057Human
406976619GWAS625595_Hintelligence QTL GWAS625595 (human)0.0000007intelligence1777034047703405Human
597421925GWAS1517999_Hsex hormone-binding globulin measurement QTL GWAS1517999 (human)3e-44sex hormone-binding globulin measurement1776955487695549Human
597349013GWAS1445087_Hbody fat percentage QTL GWAS1445087 (human)4e-32body fat mass (VT:0010482)body fat percentage (CMO:0000302)1776900017690002Human

1 to 10 of 10 rows
D17S634  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37177,602,156 - 7,602,260UniSTSGRCh37
GRCh378125,995,893 - 125,996,667UniSTSGRCh37
Build 36177,542,881 - 7,542,985RGDNCBI36
Celera8122,184,230 - 122,185,004UniSTS
Celera177,628,516 - 7,628,620RGD
Cytogenetic Map17p13.1UniSTS
HuRef177,495,582 - 7,495,682UniSTS
HuRef8121,319,341 - 121,320,115UniSTS
RH102959  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37177,606,375 - 7,606,630UniSTSGRCh37
Build 36177,547,100 - 7,547,355RGDNCBI36
Celera177,632,735 - 7,632,990RGD
Cytogenetic Map17p13.1UniSTS
HuRef177,499,711 - 7,499,966UniSTS
GeneMap99-GB4 RH Map1748.45UniSTS
GDB:181608  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37177,590,780 - 7,591,018UniSTSGRCh37
Build 36177,531,505 - 7,531,743RGDNCBI36
Celera177,617,141 - 7,617,379RGD
Cytogenetic Map17p13.1UniSTS
HuRef177,484,195 - 7,484,433UniSTS
GDB:316876  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37177,589,254 - 7,589,348UniSTSGRCh37
Build 36177,529,979 - 7,530,073RGDNCBI36
Celera177,615,615 - 7,615,709RGD
Cytogenetic Map17p13.1UniSTS
HuRef177,482,669 - 7,482,763UniSTS
MARC_3409-3410:991937215:1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37177,604,847 - 7,605,708UniSTSGRCh37
Build 36177,545,572 - 7,546,433RGDNCBI36
Celera177,631,207 - 7,632,068RGD
HuRef177,498,183 - 7,499,044UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2437 2788 2249 4970 1726 2350 6 623 1950 465 2268 7298 6467 53 3733 851 1742 1615 174 1


1 to 30 of 137 rows
RefSeq Transcripts NG_028245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001143990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001143991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001143992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001752551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC087388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK056669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK092370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK303246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY766322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY766323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ431240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ431241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU876946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU876947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU876948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU876949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU876950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU876951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU876952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU876953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU876954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 137 rows

Ensembl Acc Id: ENST00000316024   ⟹   ENSP00000324203
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,686,301 - 7,703,502 (+)Ensembl
Ensembl Acc Id: ENST00000396463   ⟹   ENSP00000379727
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,688,477 - 7,703,502 (+)Ensembl
Ensembl Acc Id: ENST00000431639   ⟹   ENSP00000397219
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,686,071 - 7,703,502 (+)Ensembl
Ensembl Acc Id: ENST00000457584   ⟹   ENSP00000411061
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,687,440 - 7,703,502 (+)Ensembl
Ensembl Acc Id: ENST00000463804   ⟹   ENSP00000465025
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,701,657 - 7,703,374 (+)Ensembl
Ensembl Acc Id: ENST00000467699
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,688,477 - 7,703,502 (+)Ensembl
Ensembl Acc Id: ENST00000471973
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,702,118 - 7,703,502 (+)Ensembl
Ensembl Acc Id: ENST00000498114
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,702,881 - 7,703,502 (+)Ensembl
Ensembl Acc Id: ENST00000498311   ⟹   ENSP00000432991
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,687,600 - 7,703,501 (+)Ensembl
Ensembl Acc Id: ENST00000534050   ⟹   ENSP00000434999
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,688,477 - 7,703,502 (+)Ensembl
Ensembl Acc Id: ENST00000698742   ⟹   ENSP00000513904
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,687,913 - 7,703,318 (+)Ensembl
Ensembl Acc Id: ENST00000698743   ⟹   ENSP00000513905
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,688,435 - 7,703,478 (+)Ensembl
Ensembl Acc Id: ENST00000698744   ⟹   ENSP00000513906
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,688,468 - 7,703,478 (+)Ensembl
Ensembl Acc Id: ENST00000698745   ⟹   ENSP00000513907
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,688,468 - 7,703,478 (+)Ensembl
Ensembl Acc Id: ENST00000698746   ⟹   ENSP00000513908
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,688,478 - 7,703,499 (+)Ensembl
Ensembl Acc Id: ENST00000698747   ⟹   ENSP00000513909
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl177,689,642 - 7,703,502 (+)Ensembl
RefSeq Acc Id: NM_001143990   ⟹   NP_001137462
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,686,071 - 7,703,502 (+)NCBI
GRCh37177,589,389 - 7,606,820 (+)ENTREZGENE
HuRef177,482,804 - 7,500,156 (+)ENTREZGENE
CHM1_1177,598,524 - 7,615,973 (+)NCBI
T2T-CHM13v2.0177,590,175 - 7,607,622 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001143991   ⟹   NP_001137463
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,687,429 - 7,703,502 (+)NCBI
GRCh37177,589,389 - 7,606,820 (+)ENTREZGENE
HuRef177,482,804 - 7,500,156 (+)ENTREZGENE
CHM1_1177,599,893 - 7,615,973 (+)NCBI
T2T-CHM13v2.0177,591,533 - 7,607,622 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001143992   ⟹   NP_001137464
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,688,477 - 7,703,502 (+)NCBI
GRCh37177,589,389 - 7,606,820 (+)ENTREZGENE
HuRef177,482,804 - 7,500,156 (+)ENTREZGENE
CHM1_1177,600,802 - 7,615,973 (+)NCBI
T2T-CHM13v2.0177,592,581 - 7,607,622 (+)NCBI
Sequence:
RefSeq Acc Id: NM_018081   ⟹   NP_060551
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,688,349 - 7,703,502 (+)NCBI
GRCh37177,589,389 - 7,606,820 (+)ENTREZGENE
Build 36177,532,520 - 7,547,544 (+)NCBI Archive
HuRef177,482,804 - 7,500,156 (+)ENTREZGENE
CHM1_1177,600,802 - 7,615,973 (+)NCBI
T2T-CHM13v2.0177,592,453 - 7,607,622 (+)NCBI
Sequence:
1 to 30 of 141 rows
Protein RefSeqs NP_001137462 (Get FASTA)   NCBI Sequence Viewer  
  NP_001137463 (Get FASTA)   NCBI Sequence Viewer  
  NP_001137464 (Get FASTA)   NCBI Sequence Viewer  
  NP_060551 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH02336 (Get FASTA)   NCBI Sequence Viewer  
  AAW92115 (Get FASTA)   NCBI Sequence Viewer  
  AAW92116 (Get FASTA)   NCBI Sequence Viewer  
  ABD92817 (Get FASTA)   NCBI Sequence Viewer  
  ABD92818 (Get FASTA)   NCBI Sequence Viewer  
  ACM07585 (Get FASTA)   NCBI Sequence Viewer  
  ACM07586 (Get FASTA)   NCBI Sequence Viewer  
  ACM07587 (Get FASTA)   NCBI Sequence Viewer  
  ACM07588 (Get FASTA)   NCBI Sequence Viewer  
  ACM07589 (Get FASTA)   NCBI Sequence Viewer  
  ACM07590 (Get FASTA)   NCBI Sequence Viewer  
  ACM07591 (Get FASTA)   NCBI Sequence Viewer  
  ACM07592 (Get FASTA)   NCBI Sequence Viewer  
  ACM07593 (Get FASTA)   NCBI Sequence Viewer  
  ACM07594 (Get FASTA)   NCBI Sequence Viewer  
  ACM07595 (Get FASTA)   NCBI Sequence Viewer  
  ACM07596 (Get FASTA)   NCBI Sequence Viewer  
  ACM07597 (Get FASTA)   NCBI Sequence Viewer  
  ACM07598 (Get FASTA)   NCBI Sequence Viewer  
  ACM07599 (Get FASTA)   NCBI Sequence Viewer  
  ACM07600 (Get FASTA)   NCBI Sequence Viewer  
  ACM07601 (Get FASTA)   NCBI Sequence Viewer  
  ACM07602 (Get FASTA)   NCBI Sequence Viewer  
  ACM07603 (Get FASTA)   NCBI Sequence Viewer  
  ACM07604 (Get FASTA)   NCBI Sequence Viewer  
  ACM07605 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 141 rows
1 to 5 of 17 rows
1 to 5 of 17 rows
RefSeq Acc Id: NP_001137462   ⟸   NM_001143990
- UniProtKB: Q08ET9 (UniProtKB/Swiss-Prot),   D3DTQ4 (UniProtKB/Swiss-Prot),   B3KPR9 (UniProtKB/Swiss-Prot),   Q9NW09 (UniProtKB/Swiss-Prot),   Q9BUR4 (UniProtKB/Swiss-Prot),   E9PMG4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001137463   ⟸   NM_001143991
- UniProtKB: Q08ET9 (UniProtKB/Swiss-Prot),   D3DTQ4 (UniProtKB/Swiss-Prot),   B3KPR9 (UniProtKB/Swiss-Prot),   Q9NW09 (UniProtKB/Swiss-Prot),   Q9BUR4 (UniProtKB/Swiss-Prot),   E9PMG4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_060551   ⟸   NM_018081
- UniProtKB: Q08ET9 (UniProtKB/Swiss-Prot),   D3DTQ4 (UniProtKB/Swiss-Prot),   B3KPR9 (UniProtKB/Swiss-Prot),   Q9NW09 (UniProtKB/Swiss-Prot),   Q9BUR4 (UniProtKB/Swiss-Prot),   E9PMG4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001137464   ⟸   NM_001143992
- UniProtKB: Q08ET9 (UniProtKB/Swiss-Prot),   D3DTQ4 (UniProtKB/Swiss-Prot),   B3KPR9 (UniProtKB/Swiss-Prot),   Q9NW09 (UniProtKB/Swiss-Prot),   Q9BUR4 (UniProtKB/Swiss-Prot),   E9PMG4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000465025   ⟸   ENST00000463804

Name Modeler Protein Id AA Range Protein Structure
AF-Q9BUR4-F1-model_v2 AlphaFold Q9BUR4 1-548 view protein structure

RGD ID:6794739
Promoter ID:HG_KWN:24908
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001143990,   NM_001143991,   OTTHUMT00000259385,   OTTHUMT00000259387,   OTTHUMT00000259388,   UC002GIP.1,   UC010CNL.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36177,530,046 - 7,532,582 (+)MPROMDB
RGD ID:7233819
Promoter ID:EPDNEW_H22655
Type:initiation region
Name:WRAP53_4
Description:WD repeat containing antisense to TP53
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22656  EPDNEW_H22659  EPDNEW_H22660  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,686,680 - 7,686,740EPDNEW
RGD ID:7233823
Promoter ID:EPDNEW_H22656
Type:initiation region
Name:WRAP53_3
Description:WD repeat containing antisense to TP53
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22655  EPDNEW_H22659  EPDNEW_H22660  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,687,429 - 7,687,489EPDNEW
RGD ID:7233825
Promoter ID:EPDNEW_H22659
Type:initiation region
Name:WRAP53_2
Description:WD repeat containing antisense to TP53
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22655  EPDNEW_H22656  EPDNEW_H22660  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,688,347 - 7,688,407EPDNEW
RGD ID:7233829
Promoter ID:EPDNEW_H22660
Type:initiation region
Name:WRAP53_1
Description:WD repeat containing antisense to TP53
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22655  EPDNEW_H22656  EPDNEW_H22659  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,688,477 - 7,688,537EPDNEW


1 to 40 of 48 rows
Database
Acc Id
Source(s)
COSMIC WRAP53 COSMIC
Ensembl Genes ENSG00000141499 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000316024 ENTREZGENE
  ENST00000316024.9 UniProtKB/Swiss-Prot
  ENST00000396463 ENTREZGENE
  ENST00000396463.7 UniProtKB/Swiss-Prot
  ENST00000431639 ENTREZGENE
  ENST00000431639.6 UniProtKB/Swiss-Prot
  ENST00000457584 ENTREZGENE
  ENST00000457584.6 UniProtKB/Swiss-Prot
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot
GTEx ENSG00000141499 GTEx
HGNC ID HGNC:25522 ENTREZGENE
Human Proteome Map WRAP53 Human Proteome Map
InterPro SWT21/TCAB1_mRNA_Telomere UniProtKB/Swiss-Prot
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot
  WD40_repeat UniProtKB/Swiss-Prot
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot
KEGG Report hsa:55135 UniProtKB/Swiss-Prot
NCBI Gene 55135 ENTREZGENE
OMIM 612661 OMIM
PANTHER TELOMERASE CAJAL BODY PROTEIN 1 UniProtKB/Swiss-Prot
  UNCHARACTERIZED UniProtKB/Swiss-Prot
Pfam WD40 UniProtKB/Swiss-Prot
PharmGKB PA164727568 PharmGKB
PROSITE WD_REPEATS_2 UniProtKB/Swiss-Prot
  WD_REPEATS_REGION UniProtKB/Swiss-Prot
SMART WD40 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot
UniProt A0A8V8TM44_HUMAN UniProtKB/TrEMBL
  A0A8V8TM47_HUMAN UniProtKB/TrEMBL
  A0A8V8TM74_HUMAN UniProtKB/TrEMBL
  A0A8V8TMM9_HUMAN UniProtKB/TrEMBL
  A0A8V8TNM2_HUMAN UniProtKB/TrEMBL
  A0A8V8TNY4_HUMAN UniProtKB/TrEMBL
  B3KPR9 ENTREZGENE
  D3DTQ4 ENTREZGENE
  E9PMG4 ENTREZGENE, UniProtKB/TrEMBL
  E9PMR3_HUMAN UniProtKB/TrEMBL
  K7EJ50_HUMAN UniProtKB/TrEMBL
1 to 40 of 48 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-03 WRAP53  WD repeat containing antisense to TP53    WD repeat containing, antisense to TP53  Symbol and/or name change 5135510 APPROVED