GWAS1127633_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1127633_H (testosterone measurement QTL GWAS1127633 (human)) Homo sapiens

Symbol: GWAS1127633_H
Name: testosterone measurement QTL GWAS1127633 (human)
RGD ID: 597031559
Trait: testosterone measurement
Measurement Type: serum testosterone level   (CMO:0000568)    
LOD Score: Not Available
P Value: 4.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38177,690,001 - 7,690,002RGD_MAPPER_PIPELINEGRCh38
GRCh37177,593,319 - 7,593,320RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1127633_HHumanserum testosterone level  IAGPrs34289079405850206 GWAS_CATALOGPMID:31169883

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1127633_HHumantestosterone measurement  IAGPrs34289079405850206 GWAS_CATALOGPMID:31169883

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1605665WRAP53WD repeat containing antisense to TP531776860717703502Human


Peak: (rs34289079)
Human AssemblyChrPosition (strand)Source
GRCh38177,690,001 - 7,690,002RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597031559GWAS1127633_Htestosterone measurement QTL GWAS1127633 (human)4e-09testosterone measurementserum testosterone level (CMO:0000568)1776900017690002Human
597349013GWAS1445087_Hbody fat percentage QTL GWAS1445087 (human)4e-32body fat mass (VT:0010482)body fat percentage (CMO:0000302)1776900017690002Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1127633_H GCST008884 Testosterone levels 4,291 European ancestry men, 3,352 European ancestry women C 0.096 4E-9 8.398 rs34289079 0.106121 testosterone measurement (EFO:0004908)
 PMID:31169883
GWAS1445087_H GCST90432179 Body fat percentage (adjusted for testosterone and SHBG) 157,937 British ancestry males ? NR 4E-32 31.398 rs34289079 0.4 body fat percentage (EFO:0007800)
 PMID:37867527
Database
Acc Id
Source(s)
GWAS Catalog GCST008884 GWAS Catalog

Note Type Note Reference