GWAS625595_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS625595_H (intelligence QTL GWAS625595 (human)) Homo sapiens

Symbol: GWAS625595_H
Name: intelligence QTL GWAS625595 (human)
RGD ID: 406976619
Trait: intelligence
LOD Score: Not Available
P Value: 7.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38177,703,404 - 7,703,405RGD_MAPPER_PIPELINEGRCh38
GRCh37177,606,722 - 7,606,723RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS625595_HHumanintelligence  IAGPrs7640405850206 GWAS_CATALOGPMID:28093568

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1605665WRAP53WD repeat containing antisense to TP531776860717703502Human
152025288LOC125177413H3K4me1 hESC enhancers GRCh37_chr17:7606219-7607112 and GRCh37_chr17:7607113-76080041777029017704686Human


Peak: (rs7640)
Human AssemblyChrPosition (strand)Source
GRCh38177,703,404 - 7,703,405RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
406976619GWAS625595_Hintelligence QTL GWAS625595 (human)0.0000007intelligence1777034047703405Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS625595_H GCST004077 Cognitive function up to 35,298 European ancestry individuals ? NR 7E-7 6.155 rs7640 0.05 intelligence (EFO:0004337)
 PMID:28093568
GWAS1704274_H GCST008757 Alcohol consumption 480,842 European ancestry individuals C 0.8 4E-10 9.398 rs7640 0.008 alcohol consumption quality (OBA:1000840)
 PMID:31358974
Database
Acc Id
Source(s)
GWAS Catalog GCST004077 GWAS Catalog

Note Type Note Reference