Snai1 (snail family zinc finger 1) - Rat Genome Database

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Gene: Snai1 (snail family zinc finger 1) Mus musculus
Analyze
Symbol: Snai1
Name: snail family zinc finger 1
RGD ID: 1553692
MGI Page MGI
Description: Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including epithelial to mesenchymal transition involved in endocardial cushion formation; heterochromatin organization; and regulation of DNA-templated transcription. Acts upstream of or within several processes, including hair follicle morphogenesis; negative regulation of cell differentiation involved in embryonic placenta development; and trophoblast giant cell differentiation. Located in cytoplasm and nucleus. Part of pericentric heterochromatin. Is expressed in several structures, including central nervous system; early conceptus; embryo mesenchyme; genitourinary system; and sensory organ. Orthologous to human SNAI1 (snail family transcriptional repressor 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI194338; S; Sna; Sna1; Snail; snail homolog 1; Snail1; zinc finger protein SNAI1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392167,380,115 - 167,384,734 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2167,380,115 - 167,384,734 (+)EnsemblGRCm39 Ensembl
GRCm382167,538,195 - 167,542,814 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2167,538,195 - 167,542,814 (+)EnsemblGRCm38mm10GRCm38
MGSCv372167,363,727 - 167,368,314 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362167,229,432 - 167,234,019 (+)NCBIMGSCv36mm8
Celera2173,478,489 - 173,483,072 (+)NCBICelera
Cytogenetic Map2H3NCBI
cM Map287.33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(+)-schisandrin B  (ISO)
(+)-Tetrandrine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(20S)-ginsenoside Rg3  (ISO)
(R)-carnitine  (ISO)
(S)-naringenin  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (EXP)
1,4-dithiothreitol  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-Dihydroxybenzophenone  (ISO)
2-ethylhexan-1-ol  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3'-diindolylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-tert-Octylphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
acrolein  (ISO)
acteoside  (ISO)
aldehydo-D-glucose  (ISO)
aldosterone  (ISO)
all-trans-retinoic acid  (EXP,ISO)
allyl isothiocyanate  (ISO)
alpha-pinene  (ISO)
aluminium atom  (ISO)
aluminium(0)  (ISO)
AM-251  (ISO)
amiodarone  (EXP,ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
andrographolide  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
antirheumatic drug  (ISO)
antroquinonol  (ISO)
aristolochic acid A  (EXP,ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
aucubin  (ISO)
bafilomycin A1  (ISO)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
buta-1,3-diene  (EXP)
butanal  (ISO)
C.I. Natural Red 20  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP,ISO)
carboxy-PTIO  (ISO)
celecoxib  (ISO)
CHIR 99021  (ISO)
chloroquine  (ISO)
choline  (EXP)
chromium(6+)  (ISO)
chrysin  (ISO)
ciprofloxacin  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cordycepin  (EXP,ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
curcumin  (ISO)
cyclosporin A  (EXP,ISO)
cypermethrin  (EXP)
cytochalasin D  (ISO)
D-glucose  (ISO)
decabromodiphenyl ether  (ISO)
deguelin  (ISO)
delphinidin  (ISO)
dexamethasone  (ISO)
dextran sulfate  (EXP)
diallyl disulfide  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
dimethyl sulfoxide  (ISO)
dinophysistoxin 1  (ISO)
dioxygen  (ISO)
disulfiram  (ISO)
doxorubicin  (EXP,ISO)
embelin  (ISO)
endosulfan  (ISO)
eplerenone  (ISO)
ergosta-4,6,8(14),22-tetraen-3-one  (ISO)
erlotinib hydrochloride  (ISO)
ethanol  (EXP)
fludioxonil  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
fulvestrant  (EXP,ISO)
furan  (ISO)
galaxolide  (ISO)
genistein  (ISO)
gentamycin  (ISO)
gingerol  (ISO)
Ginkgoic acid  (ISO)
glucose  (ISO)
Honokiol  (ISO)
hydrogen peroxide  (ISO)
Indeno[1,2,3-cd]pyrene  (ISO)
Iodine aqueous  (ISO)
jaspamide  (ISO)
ketamine  (ISO)
L-1,4-dithiothreitol  (ISO)
L-methionine  (EXP)
lapatinib  (ISO)
leflunomide  (ISO)
Licochalcone B  (ISO)
lipopolysaccharide  (EXP)
lithium chloride  (EXP,ISO)
loliolide  (ISO)
losartan  (ISO)
luteolin  (ISO)
LY294002  (ISO)
mangiferin  (ISO)
menadione  (ISO)
methimazole  (ISO)
methoxyacetic acid  (EXP)
methoxychlor  (ISO)
methylisothiazolinone  (ISO)
microcystin-LR  (ISO)
mifepristone  (ISO)
MK-2206  (EXP,ISO)
monocrotaline  (ISO)
N-acetyl-L-cysteine  (ISO)
N-methyl-N-nitrosourea  (ISO)
nickel dichloride  (ISO)
nickel sulfate  (ISO)
niclosamide  (EXP,ISO)
nicotine  (ISO)
nisin  (ISO)
Nonylphenol  (ISO)
oridonin  (ISO)
ouabain  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
p-tert-Amylphenol  (ISO)
Pachymic acid  (EXP,ISO)
paclitaxel  (EXP)
paracetamol  (EXP)
paraquat  (ISO)
patulin  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenol red  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pifithrin-?  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
propiconazole  (ISO)
pterostilbene  (ISO)
quartz  (EXP)
quercetin  (ISO)
rac-lactic acid  (ISO)
radon atom  (EXP,ISO)
radon(0)  (EXP,ISO)
reparixin  (ISO)
resveratrol  (ISO)
retinyl acetate  (EXP)
ridaforolimus  (ISO)
rotenone  (ISO)
rottlerin  (EXP)
Salinomycin  (ISO)
sanguinarine  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
sclareol  (ISO)
serpentine asbestos  (ISO)
Shikonin  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sirolimus  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sorafenib  (ISO)
stattic  (ISO)
sulfadimethoxine  (ISO)
sulforaphane  (ISO)
tacrolimus hydrate  (EXP,ISO)
tamoxifen  (ISO)
tebuconazole  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
tetraethylenepentamine  (EXP,ISO)
tetraphene  (ISO)
thioacetamide  (ISO)
thymoquinone  (ISO)
titanium dioxide  (EXP)
tolfenamic acid  (ISO)
topotecan  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
urethane  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal allantois morphology  (IAGP)
abnormal angiogenesis  (IAGP)
abnormal brain vasculature morphology  (IAGP)
abnormal cardiac outflow tract development  (IAGP)
abnormal cell migration  (IAGP)
abnormal cell physiology  (IAGP)
abnormal developmental vascular remodeling  (IAGP)
abnormal direction of embryo turning  (IAGP)
abnormal direction of heart looping  (IAGP)
abnormal fetal atrioventricular canal morphology  (IAGP)
abnormal gastrulation  (IAGP)
abnormal heart development  (IAGP)
abnormal Meckel's cartilage morphology  (IAGP)
abnormal mesoderm development  (IAGP)
abnormal palatal shelf morphology  (IAGP)
abnormal placental labyrinth vasculature morphology  (IAGP)
abnormal primitive streak morphology  (IAGP)
abnormal vascular branching morphogenesis  (IAGP)
abnormal vitelline vascular remodeling  (IAGP)
absent amnion  (IAGP)
absent chorion  (IAGP)
cleft palate  (IAGP)
decreased angiogenesis  (IAGP)
decreased atrioventricular cushion size  (IAGP)
decreased embryo size  (IAGP)
domed cranium  (IAGP)
embryonic growth arrest  (IAGP)
embryonic growth retardation  (IAGP)
embryonic lethality between somite formation and embryo turning, complete penetrance  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
embryonic lethality, complete penetrance  (IAGP)
failure of palatal shelf elevation  (IAGP)
frontal bone foramen  (IAGP)
increased allantois apoptosis  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
open neural tube  (IAGP)
persistence of medial edge epithelium during palatal shelf fusion  (IAGP)
short mandible  (IAGP)
short parietal bone  (IAGP)
thin placenta labyrinth  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. LINC00689 participates in proliferation, chemoresistance and metastasis via miR-31-5p/YAP/β-catenin axis in colorectal cancer. Du YL, etal., Exp Cell Res. 2020 Oct 1;395(1):112176. doi: 10.1016/j.yexcr.2020.112176. Epub 2020 Jul 16.
2. Ginkgolic acid (GA) suppresses gastric cancer growth by inducing apoptosis and suppressing STAT3/JAK2 signaling regulated by ROS. Liang JR and Yang H, Biomed Pharmacother. 2020 May;125:109585. doi: 10.1016/j.biopha.2019.109585. Epub 2020 Feb 25.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Large-scale screen for genes controlling mammalian embryogenesis, using high-throughput gene expression analysis in mouse embryos. Neidhardt L, etal., Mech Dev 2000 Nov;98(1-2):77-94.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Activation of activin/Smad2 and 3 signaling pathway and the potential involvement of endothelial‑mesenchymal transition in the valvular damage due to rheumatic heart disease. Xian S, etal., Mol Med Rep. 2021 Jan;23(1):10. doi: 10.3892/mmr.2020.11648. Epub 2020 Nov 12.
9. Snail and Axin2 expression predict the malignant transformation of oral leukoplakia. Zhang X, etal., Oral Oncol. 2017 Oct;73:48-55. doi: 10.1016/j.oraloncology.2017.08.004. Epub 2017 Aug 12.
Additional References at PubMed
PMID:1295727   PMID:1483390   PMID:8026341   PMID:8565825   PMID:8610012   PMID:8901056   PMID:9271672   PMID:9671584   PMID:9676199   PMID:10349636   PMID:10543399   PMID:10585766  
PMID:10654602   PMID:10655586   PMID:10773451   PMID:10853826   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11221845   PMID:11245431   PMID:11509733   PMID:11689706   PMID:11703922  
PMID:11994736   PMID:12151403   PMID:12466851   PMID:12477932   PMID:12482931   PMID:12490567   PMID:12620989   PMID:12668723   PMID:12832491   PMID:12917416   PMID:14673164   PMID:14681479  
PMID:14697364   PMID:14699574   PMID:14701881   PMID:15155580   PMID:15489334   PMID:15525667   PMID:15555546   PMID:15572143   PMID:15618518   PMID:15630473   PMID:15691760   PMID:16028273  
PMID:16141072   PMID:16141073   PMID:16169465   PMID:16236767   PMID:16261611   PMID:16314491   PMID:16316641   PMID:16397867   PMID:16452166   PMID:16516838   PMID:16554359   PMID:16568079  
PMID:16751104   PMID:16801545   PMID:16826572   PMID:16887818   PMID:16887829   PMID:16950123   PMID:17018611   PMID:17067568   PMID:17075876   PMID:17079275   PMID:17093497   PMID:17097888  
PMID:17106264   PMID:17274974   PMID:17303760   PMID:17359298   PMID:17362910   PMID:17376812   PMID:17442300   PMID:17507657   PMID:17676634   PMID:17697936   PMID:17724139   PMID:18003744  
PMID:18061568   PMID:18171685   PMID:18172008   PMID:18199583   PMID:18287559   PMID:18331720   PMID:18347060   PMID:18397758   PMID:18408755   PMID:18448090   PMID:18498095   PMID:18519590  
PMID:18539113   PMID:18663143   PMID:18701475   PMID:18708576   PMID:18760348   PMID:18794329   PMID:18796538   PMID:18802027   PMID:18830900   PMID:18832382   PMID:19056886   PMID:19168680  
PMID:19188491   PMID:19197242   PMID:19235731   PMID:19284699   PMID:19597490   PMID:19648291   PMID:19703439   PMID:19705445   PMID:19779553   PMID:19887480   PMID:19955572   PMID:19998061  
PMID:20023660   PMID:20046880   PMID:20059953   PMID:20194439   PMID:20211142   PMID:20215006   PMID:20356956   PMID:20385133   PMID:20412781   PMID:20489148   PMID:20549719   PMID:20637190  
PMID:20670162   PMID:20803506   PMID:20843830   PMID:20890042   PMID:20930141   PMID:20960543   PMID:21088236   PMID:21150329   PMID:21181942   PMID:21257819   PMID:21267068   PMID:21287656  
PMID:21311046   PMID:21317430   PMID:21361876   PMID:21445260   PMID:21482667   PMID:21577210   PMID:21597012   PMID:21610693   PMID:21646478   PMID:21663736   PMID:21690373   PMID:21693517  
PMID:21725924   PMID:21750042   PMID:21849546   PMID:21861700   PMID:21873635   PMID:21905163   PMID:21920318   PMID:21920357   PMID:21929801   PMID:21943152   PMID:21945074   PMID:21972064  
PMID:21985786   PMID:21996677   PMID:22072420   PMID:22105351   PMID:22110056   PMID:22139130   PMID:22174793   PMID:22227196   PMID:22276203   PMID:22312437   PMID:22382019   PMID:22411556  
PMID:22479362   PMID:22479508   PMID:22496368   PMID:22595290   PMID:22669107   PMID:22711520   PMID:22771117   PMID:22869142   PMID:22912414   PMID:22932696   PMID:22954964   PMID:22962329  
PMID:22988430   PMID:23055936   PMID:23059020   PMID:23097346   PMID:23288605   PMID:23322385   PMID:23322734   PMID:23348697   PMID:23424071   PMID:23509364   PMID:23552073   PMID:23560082  
PMID:23618854   PMID:23644467   PMID:23665016   PMID:23689589   PMID:23747598   PMID:23754753   PMID:23776237   PMID:23824573   PMID:23863481   PMID:23878399   PMID:23946446   PMID:23994020  
PMID:24085291   PMID:24095903   PMID:24126595   PMID:24161570   PMID:24204893   PMID:24239292   PMID:24278323   PMID:24297167   PMID:24310815   PMID:24401905   PMID:24413534   PMID:24508530  
PMID:24557836   PMID:24590292   PMID:24631216   PMID:24719096   PMID:24811539   PMID:24831012   PMID:24894949   PMID:24920580   PMID:24944064   PMID:24947186   PMID:24969754   PMID:24996922  
PMID:25092544   PMID:25136812   PMID:25164016   PMID:25240402   PMID:25245104   PMID:25316190   PMID:25336743   PMID:25371364   PMID:25488750   PMID:25504116   PMID:25505127   PMID:25550395  
PMID:25575930   PMID:25759216   PMID:25798844   PMID:25813538   PMID:25827072   PMID:26053665   PMID:26212662   PMID:26212757   PMID:26236989   PMID:26236991   PMID:26305214   PMID:26331542  
PMID:26420484   PMID:26560028   PMID:26598619   PMID:26735179   PMID:26811377   PMID:26812015   PMID:26898331   PMID:26903501   PMID:27056911   PMID:27084889   PMID:27144312   PMID:27150455  
PMID:27178982   PMID:27297885   PMID:27456656   PMID:27479603   PMID:27503928   PMID:27664421   PMID:27706205   PMID:27749822   PMID:27760115   PMID:27851965   PMID:27863213   PMID:27870829  
PMID:27982105   PMID:28067227   PMID:28112996   PMID:28172500   PMID:28538179   PMID:28611395   PMID:28714851   PMID:28729362   PMID:28803067   PMID:28839193   PMID:28880281   PMID:28882402  
PMID:28892081   PMID:28893950   PMID:29059385   PMID:29074488   PMID:29084269   PMID:29203676   PMID:29241546   PMID:29437830   PMID:29445069   PMID:29447006   PMID:29540665   PMID:29675549  
PMID:29703902   PMID:29853617   PMID:29956664   PMID:30013137   PMID:30061196   PMID:30120146   PMID:30154449   PMID:30216111   PMID:30735538   PMID:30804505   PMID:30816428   PMID:30883226  
PMID:30898767   PMID:31220272   PMID:31286822   PMID:31308417   PMID:31323030   PMID:31336025   PMID:31371508   PMID:31383647   PMID:31673056   PMID:31712603   PMID:31792383   PMID:31928974  
PMID:32005677   PMID:32188584   PMID:32325033   PMID:32329192   PMID:32518142   PMID:32521258   PMID:32546759   PMID:32597756   PMID:32655758   PMID:32696548   PMID:32882513   PMID:33158935  
PMID:33383483   PMID:33414188   PMID:33483579   PMID:33846290   PMID:33929320   PMID:34168324   PMID:34214845   PMID:34446717   PMID:34679163   PMID:34714866   PMID:34822715   PMID:34929174  
PMID:35100965   PMID:35236825   PMID:35276131   PMID:35521669   PMID:35652338   PMID:35839257   PMID:35998584   PMID:36210210   PMID:36736300   PMID:37001578   PMID:37023750   PMID:37199836  
PMID:37385754   PMID:37397253   PMID:37414772   PMID:37494420   PMID:37516803   PMID:37702066   PMID:37964360   PMID:37977070   PMID:38150048   PMID:38451818  


Genomics

Comparative Map Data
Snai1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392167,380,115 - 167,384,734 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2167,380,115 - 167,384,734 (+)EnsemblGRCm39 Ensembl
GRCm382167,538,195 - 167,542,814 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2167,538,195 - 167,542,814 (+)EnsemblGRCm38mm10GRCm38
MGSCv372167,363,727 - 167,368,314 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362167,229,432 - 167,234,019 (+)NCBIMGSCv36mm8
Celera2173,478,489 - 173,483,072 (+)NCBICelera
Cytogenetic Map2H3NCBI
cM Map287.33NCBI
SNAI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382049,982,980 - 49,988,886 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2049,982,980 - 49,988,886 (+)EnsemblGRCh38hg38GRCh38
GRCh372048,599,517 - 48,605,423 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362048,032,934 - 48,038,830 (+)NCBINCBI36Build 36hg18NCBI36
Build 342048,032,933 - 48,038,825NCBI
Celera2045,304,074 - 45,309,984 (+)NCBICelera
Cytogenetic Map20q13.13NCBI
HuRef2045,348,282 - 45,354,192 (+)NCBIHuRef
CHM1_12048,504,120 - 48,510,030 (+)NCBICHM1_1
T2T-CHM13v2.02051,752,473 - 51,758,373 (+)NCBIT2T-CHM13v2.0
Snai1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83176,667,476 - 176,671,965 (+)NCBIGRCr8
mRatBN7.23156,248,479 - 156,252,969 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3156,248,485 - 156,252,969 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3160,043,780 - 160,048,265 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03168,542,842 - 168,547,327 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03166,284,546 - 166,289,031 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03164,274,710 - 164,279,199 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3164,274,710 - 164,279,378 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03170,425,898 - 170,430,387 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43158,676,980 - 158,681,471 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13158,583,924 - 158,586,727 (+)NCBI
Celera3154,827,543 - 154,832,032 (+)NCBICelera
Cytogenetic Map3q42NCBI
Snai1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554458,231,924 - 8,237,996 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554458,232,084 - 8,237,893 (-)NCBIChiLan1.0ChiLan1.0
SNAI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22155,722,221 - 55,732,559 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12055,715,326 - 55,725,666 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02046,321,075 - 46,328,865 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12047,384,818 - 47,390,738 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2047,384,818 - 47,390,733 (+)Ensemblpanpan1.1panPan2
SNAI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12436,498,343 - 36,503,623 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2436,498,062 - 36,503,628 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2435,741,546 - 35,747,503 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02437,204,007 - 37,209,960 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2437,204,036 - 37,209,945 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12436,445,442 - 36,451,401 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02436,578,693 - 36,584,651 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02437,122,272 - 37,128,230 (+)NCBIUU_Cfam_GSD_1.0
Snai1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640189,002,837 - 189,012,567 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365144,456,484 - 4,462,987 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365144,456,498 - 4,462,436 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNAI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1751,546,477 - 51,552,499 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11751,546,446 - 51,552,498 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SNAI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1213,988,059 - 13,993,780 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl213,988,024 - 13,993,746 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605062,416,997 - 62,422,718 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snai1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247905,509,311 - 5,515,266 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247905,509,541 - 5,515,240 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Snai1
166 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:371
Count of miRNA genes:264
Interacting mature miRNAs:296
Transcripts:ENSMUST00000052631
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135432544173449616Mouse
4141703Chlq13_mcirculating hormone level QTL 13 (mouse)Not determined2135699221169699361Mouse
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135699221169699361Mouse
10043956Gnf5_mgrowth and fatness 5 (mouse)Not determined2135699221169699361Mouse
10054066Bwq9_mbody weight QTL 9 (mouse)Not determined2135699221169699361Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2138966600172966729Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
1558939Gnf1_mgrowth and fatness 1 (mouse)Not determined2143773445169117924Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151709273174389124Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1558867Gnf3_mgrowth and fatness 3 (mouse)Not determined2152699221169117924Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156196464181755017Mouse
1300688Nidd2k_mNidd2 on KK-A (mouse)Not determined2158078337178442452Mouse
12910800Pwgrq3_mpre-weaning growth rate QTL 3 (mouse)2160611165169794802Mouse
12910810Pwbwq2_mpre-weaning body weight QTL 2 (mouse)2160611165169794802Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162433493181755017Mouse
1558991Tailq4_mtail length QTL 4 (mouse)Not determined2162736926178442452Mouse
1357435Epfq2_mepididymal fat pad weight QTL 2 (mouse)Not determined2162736926178442452Mouse
1301677Alcp6_malcohol preference locus 6 (mouse)Not determined2163486407181755017Mouse
1301348Alcp5_malcohol preference locus 5 (mouse)Not determined2163486407181755017Mouse
1300676Prdt2_mprion disease incubation time 2 (mouse)Not determined2164515154181755017Mouse
1301378Hpdty_mhindlimb polydactyly (mouse)Not determined2165664893168623678Mouse

Markers in Region
RH135929  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2H3UniSTS
cM Map297.0UniSTS
Snai1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382167,541,927 - 167,542,729UniSTSGRCm38
MGSCv372167,367,427 - 167,368,229UniSTSGRCm37
Celera2173,482,185 - 173,482,987UniSTS
Cytogenetic Map2H3UniSTS
cM Map297.0UniSTS
cM Map297.0UniSTS
Snai1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2H3UniSTS
cM Map297.0UniSTS
Snai1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2H3UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000052631   ⟹   ENSMUSP00000050581
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2167,380,115 - 167,384,734 (+)Ensembl
GRCm38.p6 Ensembl2167,538,195 - 167,542,814 (+)Ensembl
RefSeq Acc Id: NM_011427   ⟹   NP_035557
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392167,380,115 - 167,384,734 (+)NCBI
GRCm382167,538,195 - 167,542,814 (+)NCBI
MGSCv372167,363,727 - 167,368,314 (+)RGD
Celera2173,478,489 - 173,483,072 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_035557   ⟸   NM_011427
- UniProtKB: Q02085 (UniProtKB/Swiss-Prot),   Q4FK48 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000050581   ⟸   ENSMUST00000052631
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q02085-F1-model_v2 AlphaFold Q02085 1-264 view protein structure

Promoters
RGD ID:6832785
Promoter ID:MM_KWN:33112
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000002241
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362167,363,291 - 167,363,791 (+)MPROMDB
RGD ID:6849139
Promoter ID:MM_XEF:4379
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   Lung,   MEF_B4
Transcripts:NM_067501,   NM_130989,   NM_205142
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362167,364,191 - 167,364,691 (+)MPROMDB
RGD ID:6879808
Promoter ID:EPDNEW_M3355
Type:single initiation site
Name:Snai1_1
Description:Mus musculus snail family zinc finger 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382167,538,202 - 167,538,262EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98330 AgrOrtholog
Ensembl Genes ENSMUSG00000042821 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000052631 ENTREZGENE
  ENSMUST00000052631.8 UniProtKB/Swiss-Prot
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20613 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:98330 ENTREZGENE
NCBI Gene 20613 ENTREZGENE
PANTHER FINGER PROTEIN, PUTATIVE-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRUEPPEL-LIKE TRANSCRIPTION FACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Snai1 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q02085 ENTREZGENE
  Q4FK48 ENTREZGENE, UniProtKB/TrEMBL
  SNAI1_MOUSE UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-07-01 Snai1  snail family zinc finger 1    snail homolog 1 (Drosophila)  Symbol and/or name change 5135510 APPROVED