Pias1 (protein inhibitor of activated STAT 1)

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Gene: Pias1 (protein inhibitor of activated STAT 1) Mus musculus

Analyze

Symbol:

Pias1

Name:

protein inhibitor of activated STAT 1

RGD ID:

1317274

MGI Page

MGI

Description:

Is expressed in several structures, including branchial arch; genitourinary system; sensory organ; tooth; and trunk mesenchyme. Orthologous to human PIAS1 (protein inhibitor of activated STAT 1); PARTICIPATES IN aldosterone signaling pathway; ataxia telangiectasia-mutated (ATM) signaling pathway; Hedgehog signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

2900068C24Rik; Ddxbp; Ddxbp1; DEAD/H (Asp-Glu-Ala-Asp/His) box binding protein 1; DEAD/H box-binding protein 1; E3 SUMO-protein ligase PIAS1; GB; GBP; protein inhibitor of activated STAT protein 1; RING-type E3 ubiquitin transferase PIAS1

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PIAS1 (protein inhibitor of activated STAT 1)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Pias1 (protein inhibitor of activated STAT, 1)	HGNC	Treefam, EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Pias1 (protein inhibitor of activated STAT 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PIAS1 (protein inhibitor of activated STAT 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PIAS1 (protein inhibitor of activated STAT 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pias1 (protein inhibitor of activated STAT 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PIAS1 (protein inhibitor of activated STAT 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	PIAS1 (protein inhibitor of activated STAT 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pias1 (protein inhibitor of activated STAT 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PIAS3 (protein inhibitor of activated STAT 3)	HGNC	OrthoMCL
Homo sapiens (human):	PIAS2 (protein inhibitor of activated STAT 2)	HGNC	OrthoMCL
Alliance orthologs ³
Homo sapiens (human):	PIAS1 (protein inhibitor of activated STAT 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Danio rerio (zebrafish):	pias1b (protein inhibitor of activated STAT, 1b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|TreeFam\|ZFIN)
Danio rerio (zebrafish):	pias1a (protein inhibitor of activated STAT, 1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam\|ZFIN)
Saccharomyces cerevisiae (baker's yeast):	NFI1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Drosophila melanogaster (fruit fly):	Su(var)2-10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Caenorhabditis elegans (roundworm):	gei-17	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup)
Saccharomyces cerevisiae (baker's yeast):	SIZ1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	62,785,648 - 62,888,161 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	9	62,785,650 - 62,895,206 (-)	Ensembl
GRCm38	9	62,878,366 - 62,980,879 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	62,878,368 - 62,987,924 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	62,727,884 - 62,828,686 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	62,678,083 - 62,778,885 (-)	NCBI			mm8
Celera	9	60,099,154 - 60,199,601 (-)	NCBI		Celera
Cytogenetic Map	9	B	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Arsenic Poisoning (ISO)

Brain Injuries (ISO)

focal segmental glomerulosclerosis (ISO)

nephronophthisis (ISO)

skin disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (EXP)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (ISO)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

Aroclor 1254 (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (EXP,ISO)

bilirubin IXalpha (ISO)

bisphenol A (ISO)

butanal (ISO)

calcitriol (ISO)

carbon nanotube (EXP)

chlorpromazine (EXP)

choline (EXP)

clofibric acid (ISO)

colforsin daropate hydrochloride (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dichloromethane (EXP)

dorsomorphin (ISO)

folic acid (EXP)

formaldehyde (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

L-methionine (EXP)

manganese(II) chloride (EXP,ISO)

methylmercury chloride (ISO)

motexafin gadolinium (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodiethylamine (ISO)

oxaliplatin (ISO)

paracetamol (ISO)

phenobarbital (EXP)

pirinixic acid (EXP)

potassium chromate (ISO)

rifampicin (ISO)

SB 431542 (ISO)

silicon dioxide (EXP)

sodium arsenate (EXP)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

theophylline (ISO)

topotecan (ISO)

trichostatin A (ISO)

troglitazone (EXP)

urethane (EXP)

valproic acid (EXP,ISO)

vitamin E (ISO)

zinc acetate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

fat cell differentiation (IDA)

G1/S transition of mitotic cell cycle (ISO)

negative regulation of apoptotic process (ISO)

negative regulation of transcription by RNA polymerase II (IMP)

positive regulation of proteasomal ubiquitin-dependent protein catabolic process (IMP)

positive regulation of protein sumoylation (ISO)

positive regulation of smooth muscle cell differentiation (ISO)

positive regulation of transcription, DNA-templated (ISO)

protein phosphopantetheinylation (IBA)

protein sumoylation (IBA,IDA,ISO)

protein-DNA complex assembly (ISO)

receptor signaling pathway via JAK-STAT (ISO)

regulation of cell population proliferation (IMP)

regulation of transcription by RNA polymerase II (IBA)

spermatogenesis (ISO)

visual learning (ISO)

Cellular Component

nucleoplasm (TAS)

nucleus (IDA,ISO)

PML body (IDA)

Molecular Function

DNA binding (IEA)

enzyme binding (ISO)

metal ion binding (IEA)

protein binding (IPI,ISO)

protein C-terminus binding (ISO)

protein domain specific binding (ISO)

RNA polymerase II transcription factor binding (IBA)

SUMO ligase activity (IBA,ISO)

SUMO transferase activity (ISO)

transcription coregulator activity (IBA)

transcription corepressor activity (ISO)

transcription factor binding (IPI)

transferase activity (IEA)

ubiquitin protein ligase binding (IPI)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

aldosterone signaling pathway (ISO)

ataxia telangiectasia-mutated (ATM) signaling pathway (ISO)

Hedgehog signaling pathway (ISO)

hepatitis C pathway (IEA)

interleukin-6 signaling pathway (ISO)

Jak-Stat signaling pathway (IEA,ISO)

small cell lung carcinoma pathway (IEA)

type II interferon signaling pathway (ISO)

ubiquitin/proteasome degradation pathway (IEA)

External Pathway Database Links

KEGG Pathway

Small cell lung cancer

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased body size (IAGP)

decreased susceptibility to Riboviria infection induced morbidity/mortality (IAGP)

increased susceptibility to bacterial infection induced morbidity/mortality (IAGP)

increased susceptibility to endotoxin shock (IAGP)

perinatal lethality, incomplete penetrance (IAGP)

References

References - curated


1.	Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3.	Liang Y, etal., Pediatr Nephrol. 2009 Sep;24(9):1661-71. doi: 10.1007/s00467-009-1163-4. Epub 2009 Apr 7.
4.	MGD data from the GO Consortium
5.	MGD IEA
6.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7.	Panier S and Durocher D, Nat Rev Mol Cell Biol. 2013 Oct;14(10):661-72. doi: 10.1038/nrm3659. Epub 2013 Sep 4.
8.	Pipeline to import KEGG annotations from KEGG into RGD
9.	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
10.	RGD automated import pipeline
11.	RGD automated import pipeline for gene-chemical interactions
12.	Tsai MC, etal., J Pineal Res. 2011 Sep;51(2):233-45. doi: 10.1111/j.1600-079X.2011.00885.x. Epub 2011 May 4.
13.	Valentino L and Pierre J, Biochem Pharmacol. 2006 Mar 14;71(6):713-21. Epub 2006 Jan 19.
14.	Yang J and Fuller PJ, Mol Cell Endocrinol. 2012 Mar 24;350(2):196-205. doi: 10.1016/j.mce.2011.07.001. Epub 2011 Jul 18.

Additional References at PubMed

PMID:9724754	PMID:10349636	PMID:10854042	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11117529	PMID:11788578	PMID:11877418	PMID:12077349	PMID:12223491	PMID:12477932
PMID:12520002	PMID:12855578	PMID:14500712	PMID:14610273	PMID:14611647	PMID:15123625	PMID:15208321	PMID:15226823	PMID:15229330	PMID:15280358	PMID:15311277	PMID:15337742
PMID:15489334	PMID:15507114	PMID:15657437	PMID:15782199	PMID:16127449	PMID:16141072	PMID:16141073	PMID:16421255	PMID:16522640	PMID:16600910	PMID:16816390	PMID:17159996
PMID:17178721	PMID:17187077	PMID:17440973	PMID:17509614	PMID:17540171	PMID:17606919	PMID:17938210	PMID:17967808	PMID:18056374	PMID:18083234	PMID:18287559	PMID:18799693
PMID:18832723	PMID:18927467	PMID:19620279	PMID:20059953	PMID:20209145	PMID:20412781	PMID:20711444	PMID:20966256	PMID:21288202	PMID:21677750	PMID:21717107	PMID:21873635
PMID:21931855	PMID:22406621	PMID:22539995	PMID:22549777	PMID:22555612	PMID:22969086	PMID:23202365	PMID:23515314	PMID:23938469	PMID:24061474	PMID:24357619	PMID:24582888
PMID:24777831	PMID:24911587	PMID:26157031	PMID:26275350	PMID:26324179	PMID:27146268	PMID:27155222	PMID:27239040	PMID:29138280	PMID:29212953	PMID:30351951	PMID:30419807

Genomics

Comparative Map Data

Pias1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	62,785,648 - 62,888,161 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	9	62,785,650 - 62,895,206 (-)	Ensembl
GRCm38	9	62,878,366 - 62,980,879 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	62,878,368 - 62,987,924 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	62,727,884 - 62,828,686 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	62,678,083 - 62,778,885 (-)	NCBI			mm8
Celera	9	60,099,154 - 60,199,601 (-)	NCBI		Celera
Cytogenetic Map	9	B	NCBI

PIAS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	15	68,054,179 - 68,198,603 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	15	68,054,309 - 68,198,603 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	15	68,054,315 - 68,193,847 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	15	68,346,653 - 68,486,185 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	66,133,626 - 66,267,467 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	15	66,133,625 - 66,267,456	NCBI
Celera	15	45,234,605 - 45,365,328 (+)	NCBI
Cytogenetic Map	15	q23	NCBI
HuRef	15	45,180,222 - 45,311,150 (+)	NCBI		HuRef
CHM1_1	15	68,465,307 - 68,601,754 (+)	NCBI		CHM1_1

Pias1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	63,338,150 - 63,451,670 (-)	NCBI
Rnor_6.0 Ensembl	8	67,771,720 - 67,869,019 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	8	67,771,720 - 67,869,015 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	8	67,500,467 - 67,597,762 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	67,025,248 - 67,123,016 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	8	67,044,301 - 67,142,058 (-)	NCBI
Celera	8	62,756,508 - 62,854,013 (-)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

Pias1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	7,896,741 - 7,991,027 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	7,896,741 - 7,991,045 (-)	NCBI	ChiLan1.0	ChiLan1.0

PIAS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	15	65,276,530 - 65,410,105 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	65,276,530 - 65,410,105 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	15	47,006,718 - 47,141,035 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

PIAS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	30	32,119,311 - 32,228,945 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	30	32,116,363 - 32,232,530 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Pias1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936471	27,925,153 - 28,055,632 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PIAS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	165,853,126 - 166,087,240 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	165,957,114 - 166,087,242 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	183,734,088 - 183,951,464 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PIAS1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	15,294,296 - 15,432,731 (-)	NCBI
ChlSab1.1 Ensembl	26	15,297,934 - 15,432,659 (-)	Ensembl

Pias1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624781	4,893,308 - 5,046,928 (-)	NCBI

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
13208563	Bmiq8_m	body mass index QTL 8 (mouse)					9	25000000	69000000	Mouse
10043847	Hdlq89_m	HDL QTL 89 (mouse)			Not determined		9	29381631	63381774	Mouse
1301782	Chol11_m	cholesterol 11 (mouse)			Not determined		9	29381631	63381774	Mouse
1301365	Ap5q_m	alcohol preference 5 QTL (mouse)			Not determined		9	30141866	64141979	Mouse
1357746	Vtbt7_m	vertebral trabecular bone trait 7 (mouse)			Not determined		9	30828617	64828723	Mouse
1302180	Actd4_m	activity-distance traveled 4 (mouse)			Not determined		9	32523263	66523557	Mouse
4141148	Cq5_m	cholesterol QTL 5 (mouse)			Not determined		9	32541121	66541246	Mouse
1301692	Hts_m	hypothermia sensitivity (mouse)			Not determined		9	32599872	66600121	Mouse
4141323	Ptnu3_m	proteinuria 3 (mouse)			Not determined		9	32978402	66978536	Mouse
1357709	Si5lq3_m	serum IGFBP-5 level QTL 3 (mouse)			Not determined		9	33199725	67199840	Mouse
1558872	Ibdq1_m	inflammatory bowel disease QTL 1 (mouse)			Not determined		9	34067544	73531973	Mouse
1301252	Etohc3_m	ethanol consumption 3 (mouse)			Not determined		9	35123178	69123299	Mouse
1301972	Cocrb8_m	cocaine related behavior 8 (mouse)			Not determined		9	35123178	69123299	Mouse
1558968	Tbdr1_m	body temperature response to dietary restriction, QTL 1 (mouse)			Not determined		9	35123178	69123299	Mouse
4142042	Alpq3_m	alcohol preference QTL 3 (mouse)			Not determined		9	37394901	98819654	Mouse
10043971	Obq32_m	obesity QTL 32 (mouse)			Not determined		9	37912244	71912244	Mouse
12791002	Arlsq2_m	aortic root lesion size QTL 2 (mouse)					9	38192291	72192291	Mouse
12790986	Pcho9_m	plasma cholesterol 9 (mouse)					9	38192291	72192291	Mouse
12790992	Arlsq1_m	aortic root lesion size QTL 1 (mouse)					9	38192291	72192291	Mouse
12738449	Spcq2_m	sperm count QTL 2 (mouse)					9	39492601	73492601	Mouse
4141071	Ath29_m	atherosclerosis 29 (mouse)			Not determined		9	40508298	74700643	Mouse
1301702	Brm1_m	brachyury modifier 1 (mouse)			Not determined		9	40897764	74897921	Mouse
1301558	Stheal8_m	soft tissue heal 8 (mouse)			Not determined		9	43573431	77573577	Mouse
10045639	Heal28_m	wound healing/regeneration 28 (mouse)			Not determined		9	43573431	77573577	Mouse
1301435	Trigq1_m	triglyceride QTL 1 (mouse)			Not determined		9	44520892	78520980	Mouse
4141572	Ntta3_m	neurotensin transcript abundance 3 (mouse)			Not determined			46686373	65923895	Mouse
1300716	Cd4ts4_m	CD4 T cell subset 4 (mouse)			Not determined		9	48923774	82923895	Mouse
1300563	Pgia5_m	proteoglycan induced arthritis 5 (mouse)			Not determined		9	48923774	82923895	Mouse
1301051	Eae9_m	susceptibility to experimental allergic encephalomyelitis 9 (mouse)			Not determined		9	49508998	63332570	Mouse
1301049	El4_m	epilepsy 4 (mouse)			Not determined		9	49508998	67244166	Mouse
4141224	Dxmod_m	doxorubicin nephropathy modifier (mouse)			Not determined			49541121	101528921	Mouse
14746993	Manh66_m	mandible shape 66 (mouse)					9	49906766	83906766	Mouse
1301184	Bdln4_m	body length 4 (mouse)			Not determined		9	50244038	84244166	Mouse
1301241	Renf1_m	renal failure 1 (mouse)			Not determined		9	52123178	99910428	Mouse
13525008	Hrtiq1_m	heart rate time index, QTL 1 (mouse)					9	52514798	68648726	Mouse
12790990	Tgl7_m	triglyceride 7 (mouse)					9	54652678	88652678	Mouse
10043877	Adip21_m	adiposity 21 (mouse)			Not determined		9	56531826	90531973	Mouse
1301287	Feml2_m	femur length in high growth mice 2 (mouse)			Not determined		9	57600000	63300000	Mouse
1301965	Vmbic5_m	ventral midbrain iron content 5 (mouse)			Not determined		9	57684209	65923895	Mouse
1301549	Bbaa9_m	B.burgdorferi-associated arthritis 9 (mouse)			Not determined		9	57897764	71574472	Mouse
4141676	Neogq1_m	neonatal growth QTL 1 (mouse)			Not determined		9	57897764	86239920	Mouse
13525007	Lfhrvq1_m	low frequency time index heart rate varaiblity, QTL 1 (mouse)					9	58877035	68648726	Mouse
1301172	Fembrs6_m	femur breaking strength 6 (mouse)			Not determined		9	59117105	93117252	Mouse
1301803	Stheal9_m	soft tissue heal 9 (mouse)			Not determined		9	59117105	93117252	Mouse
5491195	Mobq8_m	multigenic obesity QTL 8 (mouse)			Not determined		9	59462664	93462846	Mouse
1300848	Skull13_m	skull morphology 13 (mouse)			Not determined		9	59462664	93462846	Mouse
1301456	Adip5_m	adiposity 5 (mouse)			Not determined		9	59462664	93462846	Mouse
13207569	Tcq13_m	total cholesterol QTL 13 (mouse)					9	59990000	109260000	Mouse
1301611	Lrnx3_m	learning contextual 3 (mouse)			Not determined		9	62242485	96242599	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	574
Count of miRNA genes:	388
Interacting mature miRNAs:	437
Transcripts:	ENSMUST00000098651
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_019663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006511302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC142168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC164614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF077950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK013753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK028413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK034970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK035682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK075708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK136188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK142088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK153871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK162584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK187989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY902346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC051417	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000098651 ⟹ ENSMUSP00000096248

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	62,878,368 - 62,980,879 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000214830 ⟹ ENSMUSP00000150834

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	62,882,880 - 62,980,883 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000215455

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	62,922,907 - 62,951,996 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000215501 ⟹ ENSMUSP00000149235

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	62,878,487 - 62,887,387 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000216209 ⟹ ENSMUSP00000149590

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	9	62,920,457 - 62,987,924 (-)	Ensembl

RefSeq Acc Id:

NM_019663 ⟹ NP_062637

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	62,787,359 - 62,888,161 (-)	NCBI
GRCm38	9	62,880,077 - 62,980,879 (-)	NCBI
MGSCv37	9	62,727,884 - 62,828,686 (-)	RGD
Celera	9	60,099,154 - 60,199,601 (-)	RGD
cM Map	9		ENTREZGENE

Sequence:

show sequence

GACGCAAGATGGCGGACAGTGCGGAACTAAAGCAAATGGTTATGAGCCTTAGAGTTTCTGAACT
CCAAGTACTGTTGGGCTACGCTGGGAGGAACAAGCACGGACGCAAACACGAACTTCTTACAAAA
GCCCTGCATTTGTTAAAGGCTGGCTGTAGTCCTGCTGTACAAATGAAAATTAAAGAACTCTACA
GGAGGCGGTTCCCTCAGAAAATTATGACGCCTGCGGACTTGTCTATCCCCAACGTACATTCAAG
TCCTATGCCTCCGACTCTTTCTCCATCCACCATTCCACAGCTCACTTATGATGGCCACCCTGCA
TCATCCCCACTACTCCCTGTTTCTCTTCTGGGACCCAAACATGAACTGGAACTCCCACATCTCA
CGTCAGCGCTGCACCCAGTCCACCCGGACATAAAGCTGCAGAAGCTACCATTCTATGACCTGTT
GGATGAACTGATCAAGCCCACCAGTCTAGCTTCAGACAACAGCCAGCGCTTTCGGGAAACCTGT
TTTGCATTTGCCTTGACACCACAACAGGTGCAGCAGATCAGCAGCTCCATGGATATTTCTGGGA
CCAAATGTGACTTCACAGTGCAGGTCCAATTAAGGTTTTGTTTATCAGAAACCAGTTGTCCACA
AGAAGATCACTTCCCACCCAACCTTTGTGTAAAAGTGAATACAAAACCTTGCAGCCTTCCAGGT
TACCTTCCACCTACTAAAAACGGTGTGGAACCAAAGCGACCTAGCCGACCAATTAATATCACCT
CACTTGTCCGATTGTCCACGACAGTACCAAATACCATTGTTGTTTCTTGGACTGCAGAAATTGG
AAGAACCTATTCCATGGCAGTATATCTTGTAAAACAGTTGTCCTCAACAGTTCTTCTTCAGAGG
TTACGAGCAAAGGGAATAAGGAATCCGGATCATTCTAGAGCTTTAATTAAAGAGAAGTTAACTG
CAGATCCAGATAGTGAGATAGCTACTACCAGCCTACGGGTTTCGCTGCTGTGTCCACTTGGGAA
AATGCGACTGACAATCCCCTGTCGGGCACTTACCTGCTCCCACCTTCAGTGTTTTGATGCAACT
CTTTACATTCAAATGAATGAGAAAAAACCAACATGGGTTTGTCCTGTCTGTGATAAGAAGGCCC
CATATGAACACCTTATTATTGACGGGTTGTTTATGGAAATTCTAAAGTACTGCACAGACTGTGA
CGAGATACAGTTTAAGGAGGATGGCTCGTGGGCTCCAATGAGGTCAAAGAAGGAGGTTCAAGAA
GTCACTGCCTCCTACAATGGAGTTGATGGTTGCTTGAGCTCCACATTGGAGCATCAGGTAGCGT
CCCACAACCAGTCCTCAAATAAAAACAAGAAAGTCGAGGTCATTGACCTAACCATTGACAGCTC
GTCAGATGAAGAGGAGGAAGAACCCCCTGCCAAGAGGACCTGTCCTTCCCTGTCTCCTACGTCA
CCACTAAGTAATAAAGGCATTTTAAGTCTTCCTCATCAAGCCTCGCCTGTGTCCCGCACCCCAA
GCCTTCCTGCTGTAGATACAAGCTACATCAACACCTCCCTCATCCAGGACTACAGGCACCCCTT
CCACATGACGCCTATGCCTTATGACTTACAAGGATTAGATTTCTTTCCTTTCTTATCAGGAGAC
AATCAGCATTACAACACCTCCCTGCTAGCCGCAGCTGCAGCGGCGGTCTCAGATGACCAGGACC
TCCTGCACTCCTCCCGGTTTTTCCCGTATACCTCCTCGCAGATGTTTCTCGACCAGCTAAGTGC
AGGAGGGAGCACATCTCTGCCAGCCACCAACGGAAGCAGTAGCGGCAGCAACAGCAGCCTTGTG
TCTTCCAACAGTCTGAGAGAGAGCCATGGCCATGGTGTGGCCAGCAGGAGCAGCGCAGACACAG
CGTCCATCTTTGGCATCATACCAGACATTATCTCATTGGACTGACGCTCTCACCCTGCTGCTCC
CACCCCATCCCAGATTAAATGACTTGGCAGAAGAGAACTCTATGCTCTGTTTTACCTTATCCTG
TTTAGAAAAGTATACAAGCGTGGTTTTTTTTTTCCTTTTTTTTAGGGAAAAAAAAATTAAAAGA
AATGTACAGAGAACAAAACTATATTTTCAGTTTTACTTTTGTATATAAATCTAAGACTGCCTGT
CTGATAAAACACTTGTTTAAAAAAAAAAAAAAGAAAAAAGAAAAAGAAAAAACAAGCACCCACA
AACCTTCAGTTCATTTTTTCTGGATTCTGAAGACTTCACCATTTGTCCTGTGGTTTGGGTTTTA
TTTTACTTCAATGGCATTATCTTTCTTGCAATAACGGAAACAATTGCATGTATGAGGTTTAAAT
TGTGGGCTTTGTTGTGGGGATGGGTTTGGGATAGCTTTGATTTCCATTTTTTAAAAGTGACAGA
CTTGGATTCTGTTTGTGTGTGCGTAGATTTTACCAGCCTTAAGTTATGAGCCTCGTCTATCTTA
CTGCATACCCTTTGTTTTCAAGACAGAGCTTGTGTGCGTGAGTGCGTGCGCGCGTGCGCGCAAG
AGCGCCTGTGTACCTGTATGTGCTGTTCTGTCGTCACTCGCCCCTCCTCCTCAGTTTGCATTTG
GTTATTATCACTCTTGTGTGAGCATCTTTCTCAACTCTCCCTAGGTGCATGTTCTCCATCCCAG
ATCCTCTGTGATCTGCTGTCTACCCTCTACGAGTGTGTTTCCCAGAAGTGCTGGAGCAAACGCT
GCTTGGATGCGCAGTCTGTGGGCAGGCCCTCGAATGACAATACACTTCTGTTGATTCTAAGTCT
GAATTGCCAGTATTCTGTATGTAATCCAAGGCTGTGAGCACTTGCATTTTGGCAACAGGGTAAC
AAGTTTTCCTTGAGGATCTTCATACCAAAATGGGATGTGAAAGAACCCCCGTAGCCCCGTGGGG
TGTGGAGCTGGCAGAGGTCGTTCCGTTCCACCGAAAGAAAAGAAGGAAGGAAGGAAGGAAAGAA
AGAATCGGTTATCCTAAAGTTAACAGTACAGCACAGCCCACATGTGGATCCATACCAAATCTAT
CTGATAAATAGTTGAAACTCAAAAATAACCTTAGTTATTTTGGTTTTCTGTCTCCGAGTATACT
TCCTTTCTTAGCCGTGTTCTTTTTTCCTTCACCTTTAGTGAAAGCATGACATAGGAAGCCTTTT
TTTTTTTAAATTCAAGAACCAATTGGTCTCACCTACTCTCAATAGCAGAATATGTAAATATATT
AAAATTTGTTTCAGGAGGTGATTAAGGGTCAAAGGAAGGAAAAAATACTTCTCATACTTGAGAG
TCCGCAGAGAAGAAAGCATGCTCTGACAGTGGGAGATAGATGGCAACTGATGGAGGATGCAGGT
GTAACTGCAGAGAGCCAGGGCACACCATCACCAGCTCCTGCACTGGCTTTTATGTCCCACCTTC
ATGTTTTCAGAGTTGTGGAAGGACCATCTTTGTGTGTGGTAAACTTGTTTTCAAGCCTTGCATC
CATAACAGAAGGACCGGTAGGTATTAATCCAGGTAGAAGTCATGATGACTGTGTCTTCAGTTGT
ATAATAAAGGAAGTGGTTCACATGACAGCGTGGCATCTAAAAATAATATCTATTTTATAGTCTC
TCTGCTACTAAAATGTCGACTTGAATTTTTGAAAAAAGTTGGTGTTGATATGTATATGTGTGTG
TGTGTGTATATATATATGTATTTATAAACAAGTGCGTGTGAGTAACATCATCGTCTTCCCCTAC
GCATGTGTGTTCCACACAGAAACGGCTGTGTTAGAGTCACAAAACAATTCGCAATAAAACAAGA
CATTTGTTATCAGTT

hide sequence

RefSeq Acc Id:

XM_006511302 ⟹ XP_006511365

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	9	62,785,648 - 62,861,721 (-)	NCBI
GRCm38	9	62,878,366 - 62,953,168 (-)	NCBI

Sequence:

show sequence

TCTGAAAGGGTCACAACCAGTGAGAACCACTGGTCTAATGTGTTAGCCGAGAAAGAGGGTATTT
ATAATGAGTGGTATGGGAAGGTAGGGAGGCAGTGCAGCCACTGTGTGGTGTTATTTGATATGAG
GGCAGACAATCCAACAGTTAAGGAATAGAGGATTTAATGAATTTAAGCTTGCAGGTGTGTGTCC
ATCCTGGCATTTCCTGTCAGAGACAGGACTTCCATAAGTAACAGTGTGGTTTTTGGTTCCCCTT
TCTGTTGCTTTAAAATGGGAGGTTCAGATTAGATCTCCATGTTCTTAGAAGGTGGGGGGAAGTA
GATGAAATAAATTGTGAACACAGAATTAATGAAGGTAAGTAGATTTCTGTTGTGTGGCTTCACC
TAGTATGGTTGTGCAGATGGAATTCCTGATGGCTTAAATGAGAAGTGCAAGCTTTAGCATCTGA
TGAGACTGCCAGCTTGCTGTATAGAAGGAAAGACTAAGAGCAAATGGTTATGAGCCTTAGAGTT
TCTGAACTCCAAGTACTGTTGGGCTACGCTGGGAGGAACAAGCACGGACGCAAACACGAACTTC
TTACAAAAGCCCTGCATTTGTTAAAGGCTGGCTGTAGTCCTGCTGTACAAATGAAAATTAAAGA
ACTCTACAGGAGGCGGTTCCCTCAGAAAATTATGACGCCTGCGGACTTGTCTATCCCCAACGTA
CATTCAAGTCCTATGCCTCCGACTCTTTCTCCATCCACCATTCCACAGCTCACTTATGATGGCC
ACCCTGCATCATCCCCACTACTCCCTGTTTCTCTTCTGGGACCCAAACATGAACTGGAACTCCC
ACATCTCACGTCAGCGCTGCACCCAGTCCACCCGGACATAAAGCTGCAGAAGCTACCATTCTAT
GACCTGTTGGATGAACTGATCAAGCCCACCAGTCTAGCTTCAGACAACAGCCAGCGCTTTCGGG
AAACCTGTTTTGCATTTGCCTTGACACCACAACAGGTGCAGCAGATCAGCAGCTCCATGGATAT
TTCTGGGACCAAATGTGACTTCACAGTGCAGGTCCAATTAAGGTTTTGTTTATCAGAAACCAGT
TGTCCACAAGAAGATCACTTCCCACCCAACCTTTGTGTAAAAGTGAATACAAAACCTTGCAGCC
TTCCAGGTTACCTTCCACCTACTAAAAACGGTGTGGAACCAAAGCGACCTAGCCGACCAATTAA
TATCACCTCACTTGTCCGATTGTCCACGACAGTACCAAATACCATTGTTGTTTCTTGGACTGCA
GAAATTGGAAGAACCTATTCCATGGCAGTATATCTTGTAAAACAGTTGTCCTCAACAGTTCTTC
TTCAGAGGTTACGAGCAAAGGGAATAAGGAATCCGGATCATTCTAGAGCTTTAATTAAAGAGAA
GTTAACTGCAGATCCAGATAGTGAGATAGCTACTACCAGCCTACGGGTTTCGCTGCTGTGTCCA
CTTGGGAAAATGCGACTGACAATCCCCTGTCGGGCACTTACCTGCTCCCACCTTCAGTGTTTTG
ATGCAACTCTTTACATTCAAATGAATGAGAAAAAACCAACATGGGTTTGTCCTGTCTGTGATAA
GAAGGCCCCATATGAACACCTTATTATTGACGGGTTGTTTATGGAAATTCTAAAGTACTGCACA
GACTGTGACGAGATACAGTTTAAGGAGGATGGCTCGTGGGCTCCAATGAGGTCAAAGAAGGAGG
TTCAAGAAGTCACTGCCTCCTACAATGGAGTTGATGGTTGCTTGAGCTCCACATTGGAGCATCA
GGTAGCGTCCCACAACCAGTCCTCAAATAAAAACAAGAAAGTCGAGGTCATTGACCTAACCATT
GACAGCTCGTCAGATGAAGAGGAGGAAGAACCCCCTGCCAAGAGGACCTGTCCTTCCCTGTCTC
CTACGTCACCACTAAGTAATAAAGGCATTTTAAGTCTTCCTCATCAAGCCTCGCCTGTGTCCCG
CACCCCAAGCCTTCCTGCTGTAGATACAAGCTACATCAACACCTCCCTCATCCAGGACTACAGG
CACCCCTTCCACATGACGCCTATGCCTTATGACTTACAAGGATTAGATTTCTTTCCTTTCTTAT
CAGGAGACAATCAGCATTACAACACCTCCCTGCTAGCCGCAGCTGCAGCGGCGGTCTCAGATGA
CCAGGACCTCCTGCACTCCTCCCGGTTTTTCCCGTATACCTCCTCGCAGATGTTTCTCGACCAG
CTAAGTGCAGGAGGGAGCACATCTCTGCCAGCCACCAACGGAAGCAGTAGCGGCAGCAACAGCA
GCCTTGTGTCTTCCAACAGTCTGAGAGAGAGCCATGGCCATGGTGTGGCCAGCAGGAGCAGCGC
AGACACAGCGTCCATCTTTGGCATCATACCAGACATTATCTCATTGGACTGACGCTCTCACCCT
GCTGCTCCCACCCCATCCCAGATTAAATGACTTGGCAGAAGAGAACTCTATGCTCTGTTTTACC
TTATCCTGTTTAGAAAAGTATACAAGCGTGGTTTTTTTTTTCCTTTTTTTTAGGGAAAAAAAAA
TTAAAAGAAATGTACAGAGAACAAAACTATATTTTCAGTTTTACTTTTGTATATAAATCTAAGA
CTGCCTGTCTGATAAAACACTTGTTTAAAAAAAAAAAAAAGAAAAAAGAAAAAGAAAAAACAAG
CACCCACAAACCTTCAGTTCATTTTTTCTGGATTCTGAAGACTTCACCATTTGTCCTGTGGTTT
GGGTTTTATTTTACTTCAATGGCATTATCTTTCTTGCAATAACGGAAACAATTGCATGTATGAG
GTTTAAATTGTGGGCTTTGTTGTGGGGATGGGTTTGGGATAGCTTTGATTTCCATTTTTTAAAA
GTGACAGACTTGGATTCTGTTTGTGTGTGCGTAGATTTTACCAGCCTTAAGTTATGAGCCTCGT
CTATCTTACTGCATACCCTTTGTTTTCAAGACAGAGCTTGTGTGCGTGAGTGCGTGCGCGCGTG
CGCGCAAGAGCGCCTGTGTACCTGTATGTGCTGTTCTGTCGTCACTCGCCCCTCCTCCTCAGTT
TGCATTTGGTTATTATCACTCTTGTGTGAGCATCTTTCTCAACTCTCCCTAGGTGCATGTTCTC
CATCCCAGATCCTCTGTGATCTGCTGTCTACCCTCTACGAGTGTGTTTCCCAGAAGTGCTGGAG
CAAACGCTGCTTGGATGCGCAGTCTGTGGGCAGGCCCTCGAATGACAATACACTTCTGTTGATT
CTAAGTCTGAATTGCCAGTATTCTGTATGTAATCCAAGGCTGTGAGCACTTGCATTTTGGCAAC
AGGGTAACAAGTTTTCCTTGAGGATCTTCATACCAAAATGGGATGTGAAAGAACCCCCGTAGCC
CCGTGGGGTGTGGAGCTGGCAGAGGTCGTTCCGTTCCACCGAAAGAAAAGAAGGAAGGAAGGAA
GGAAAGAAAGAATCGGTTATCCTAAAGTTAACAGTACAGCACAGCCCACATGTGGATCCATACC
AAATCTATCTGATAAATAGTTGAAACTCAAAAATAACCTTAGTTATTTTGGTTTTCTGTCTCCG
AGTATACTTCCTTTCTTAGCCGTGTTCTTTTTTCCTTCACCTTTAGTGAAAGCATGACATAGGA
AGCCTTTTTTTTTTTAAATTCAAGAACCAATTGGTCTCACCTACTCTCAATAGCAGAATATGTA
AATATATTAAAATTTGTTTCAGGAGGTGATTAAGGGTCAAAGGAAGGAAAAAATACTTCTCATA
CTTGAGAGTCCGCAGAGAAGAAAGCATGCTCTGACAGTGGGAGATAGATGGCAACTGATGGAGG
ATGCAGGTGTAACTGCAGAGAGCCAGGGCACACCATCACCAGCTCCTGCACTGGCTTTTATGTC
CCACCTTCATGTTTTCAGAGTTGTGGAAGGACCATCTTTGTGTGTGGTAAACTTGTTTTCAAGC
CTTGCATCCATAACAGAAGGACCGGTAGGTATTAATCCAGGTAGAAGTCATGATGACTGTGTCT
TCAGTTGTATAATAAAGGAAGTGGTTCACATGACAGCGTGGCATCTAAAAATAATATCTATTTT
ATAGTCTCTCTGCTACTAAAATGTCGACTTGAATTTTTGAAAAAAGTTGGTGTTGATATGTATA
TGTGTGTGTGTGTGTATATATATATGTATTTATAAACAAGTGCGTGTGAGTAACATCATCGTCT
TCCCCTACGCATGTGTGTTCCACACAGAAACGGCTGTGTTAGAGTCACAAAACAATTCGCAATA
AAACAAGACATTTGTTATCAGTTAAAACCAGAAATAGTTATGTTTTTAAATTCATCTGGTGTTA
TGAATACAGGTTCTACCATCTCTCATTACTGTATTAATTTAGACTCACTTCAGATAACCATAAT
TTGTCTAAATTGGGATTATAGTGGAAATCACTGAAATTTTGAGGTGTTTCTATTAACATAGCAA
TAGGAAACATTATTTTAACTGAGGTAAAATGAATAGTTTTCTTTGTTCTTGGTTTTGTTTGGGT
GTTTTTGGTTTGGTTTGGTCTGGTTTTGGTTACTGTTAGTAGTTTTAGGATACTGATGCATAGT
TTTTTGTGTCTGATGCTGAATTACAAACTTAAAATAATCCAGTTTAAACCAGCTCTCTGCATTC
TTCATGCCAGCTATAGAGGGGTCACTTTCCTTCGGTGTCCTGCCTTGTACCAGCCTAAGGGGAG
AGCCGGTAACTGGAGGAATAGATGCCCTGTGGCTTTGGTCATGTCCCCACGGGAGAACAAGCCG
TTTGGTTGTCTGTATGTTTTAGTTCCTTCCATTTACTGAGGAGTTCACTTCTTCAGTGTTGACG
TTCTAAAATGTTGCATGTGGTCAAGTTCAGTCAGAGACTTTCACAACCCTGAATAATTATTAGA
GCCACACACCACTTTATCTCCTGCATTAAAAGAAAAAGCGCATGGTCACTTTGTCCCGTTGTTG
TCGTTTTTCCTTAGGCCGACCTCACTCCCCAGCCCTGCCAACCTTGATTAATAGGCTGTGGACA
GATAATGTTCTCAGCATCTTTGATTCAGCAAGCTGCCAGGAGCTCCTTCCTTAGTCTCTCCCTC
TGGCATGTGTTCTCTACAGTATCGTGTGTGTGCTCCCGTCTTTCTGTAAGCACACACCATCAAT
AAAGTAGCCATTCAGCCAGGAGGGTAGAGGTGGCTTTTAATTTACCATGTGGGCATTACTGGAC
ACATTTTTTTAAATATGAAACTTAACCATGCATACTTTGTTGAGTATTGAAGTTGTTCCACTGC
TAATTTAGATGTTACACATCTACATTACTGACTTCAAGAATCACTAAAGGTTTGAAAAATGTGG
GTTCTTTTGGTGGCGGTGGTGGTGGTGGTATATTTTTTTTGTCGTTGTTGCTTTTTGTTTTATT
CTTTTTTTCAGCCAATTTTCCTTTTGAGACAAGTCTGTGAAACCGAATGAAAATATGCCCTAAT
TGTAAATGAATAAATGTAGAAAGAACCTAGTTTTTAAAGCAGTTTCAATTTTAAATACATGAAA
CTTTCAGAATCTTCAGGACTCTTAAAGCACATTTGAATTTATTTTGGTAAGAATTTTGTTTTGT
GGATACACGTTGAATTCTGTTTTTTTTTTAATTAAACACAAAGTGTAGCTTTCAAGGAGGGAGG
GAGAGTAGCCGGTGGTCCCAGAGCGTGCTGCTGCTGTTTTATTAACATAGGGGAAGATGTATAT
AAATAGATAAAGATTACCATAAATTCCATGAACTTAAATCTGTGATTCATTGCCTTAAGACTTT
CTCTCTTAGAATTTCCATACCGCATGCCAAACCAGTAAAATGGCTTTTAAAAAATGTATAGTAG
ACCAATGTCAGTTTGTATAAAAGTACCAAGTGAAAATATTTATTACATGCATTGGAGAAAAGTT
GTTTCCCTGTTGAATGTTACCTGTTTCTGTAGAGCTCTTTAGATGTAATAAAAGAGAAGCCTTC
AGTTAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_062637	(Get FASTA)	NCBI Sequence Viewer
	XP_006511365	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC36701	(Get FASTA)	NCBI Sequence Viewer
	AAH51417	(Get FASTA)	NCBI Sequence Viewer
	AAY21056	(Get FASTA)	NCBI Sequence Viewer
	BAC35902	(Get FASTA)	NCBI Sequence Viewer
	BAE22864	(Get FASTA)	NCBI Sequence Viewer
	BAE32224	(Get FASTA)	NCBI Sequence Viewer
	EDL26033	(Get FASTA)	NCBI Sequence Viewer
	O88907	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_062637 ⟸ NM_019663

- UniProtKB:

O88907 (UniProtKB/Swiss-Prot), Q2M4G9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRR
FPQKIMTPADLSIPNVHSSPMPPTLSPSTIPQLTYDGHPASSPLLPVSLLGPKHELELPHLTSA
LHPVHPDIKLQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQISSSMDISGTKC
DFTVQVQLRFCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPSRPINITSLV
RLSTTVPNTIVVSWTAEIGRTYSMAVYLVKQLSSTVLLQRLRAKGIRNPDHSRALIKEKLTADP
DSEIATTSLRVSLLCPLGKMRLTIPCRALTCSHLQCFDATLYIQMNEKKPTWVCPVCDKKAPYE
HLIIDGLFMEILKYCTDCDEIQFKEDGSWAPMRSKKEVQEVTASYNGVDGCLSSTLEHQVASHN
QSSNKNKKVEVIDLTIDSSSDEEEEEPPAKRTCPSLSPTSPLSNKGILSLPHQASPVSRTPSLP
AVDTSYINTSLIQDYRHPFHMTPMPYDLQGLDFFPFLSGDNQHYNTSLLAAAAAAVSDDQDLLH
SSRFFPYTSSQMFLDQLSAGGSTSLPATNGSSSGSNSSLVSSNSLRESHGHGVASRSSADTASI
FGIIPDIISLD

hide sequence

RefSeq Acc Id:

XP_006511365 ⟸ XM_006511302

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSPAVQMKIKELYRRRFPQKIMTPA
DLSIPNVHSSPMPPTLSPSTIPQLTYDGHPASSPLLPVSLLGPKHELELPHLTSALHPVHPDIK
LQKLPFYDLLDELIKPTSLASDNSQRFRETCFAFALTPQQVQQISSSMDISGTKCDFTVQVQLR
FCLSETSCPQEDHFPPNLCVKVNTKPCSLPGYLPPTKNGVEPKRPSRPINITSLVRLSTTVPNT
IVVSWTAEIGRTYSMAVYLVKQLSSTVLLQRLRAKGIRNPDHSRALIKEKLTADPDSEIATTSL
RVSLLCPLGKMRLTIPCRALTCSHLQCFDATLYIQMNEKKPTWVCPVCDKKAPYEHLIIDGLFM
EILKYCTDCDEIQFKEDGSWAPMRSKKEVQEVTASYNGVDGCLSSTLEHQVASHNQSSNKNKKV
EVIDLTIDSSSDEEEEEPPAKRTCPSLSPTSPLSNKGILSLPHQASPVSRTPSLPAVDTSYINT
SLIQDYRHPFHMTPMPYDLQGLDFFPFLSGDNQHYNTSLLAAAAAAVSDDQDLLHSSRFFPYTS
SQMFLDQLSAGGSTSLPATNGSSSGSNSSLVSSNSLRESHGHGVASRSSADTASIFGIIPDIIS
LD

hide sequence

RefSeq Acc Id:

ENSMUSP00000149590 ⟸ ENSMUST00000216209

RefSeq Acc Id:

ENSMUSP00000096248 ⟸ ENSMUST00000098651

RefSeq Acc Id:

ENSMUSP00000149235 ⟸ ENSMUST00000215501

RefSeq Acc Id:

ENSMUSP00000150834 ⟸ ENSMUST00000214830

Protein Domains

PINIT SAP SP-RING-type

Promoters

RGD ID:

6844949

Promoter ID:

MM_KWN:57698

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day1, 3T3L1_Day2, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000116566, NM_019663

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	9	62,828,401 - 62,828,901 (-)	MPROMDB

RGD ID:

8669914

Promoter ID:

EPDNEW_M12987

Type:

multiple initiation site

Name:

Pias1_1

Description:

Mus musculus protein inhibitor of activated STAT 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	9	62,980,883 - 62,980,943	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1913125	AgrOrtholog
Ensembl Genes	ENSMUSG00000032405	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000096248	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000149235	UniProtKB/TrEMBL
	ENSMUSP00000149590	UniProtKB/TrEMBL
	ENSMUSP00000150834	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000098651	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000214830	UniProtKB/TrEMBL
	ENSMUST00000215501	UniProtKB/TrEMBL
	ENSMUST00000216209	UniProtKB/TrEMBL
Gene3D-CATH	1.10.720.30	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.60.120.780	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	PIAS1/PIAS3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PINIT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PINIT_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SAP_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SAP_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_MIZ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:56469	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:1913125	ENTREZGENE
NCBI Gene	56469	ENTREZGENE
PANTHER	PTHR10782:SF11	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	PINIT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	zf-MIZ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Pias1	PhenoGen
PROSITE	PINIT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SAP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZF_SP_RING	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	SAP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF68906	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A1L1SQX9_MOUSE	UniProtKB/TrEMBL
	A0A1L1SRS2_MOUSE	UniProtKB/TrEMBL
	O88907	ENTREZGENE, UniProtKB/Swiss-Prot
	Q2M4G9	ENTREZGENE, UniProtKB/TrEMBL
	Q3U556_MOUSE	UniProtKB/TrEMBL
	Q3UWQ0_MOUSE	UniProtKB/TrEMBL
UniProt Secondary	Q8C6H5	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

External Pathway Database Links

External Pathway Database Links