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Pathways

FATTY ACID BETA DEGRADATION PATHWAY (PW:0000738)

View Ontology Report

Description

The degradation of fatty acids represents an essential source of energy; a major route is the mitochondrial beta-oxidation pathway. Before beta-oxidation can proceed, fatty acids need to be 'primed' or activated. The formation of fatty acyl-CoA thioesters is catalyzed by acyl-CoA synthetases in a two-step reaction. There are several acyl-CoA synthetases named after their chain length specificity. Once activated, acyl-CoAs need to reach the mitochondrial matrix where the enzymes of the beta-oxida

Pathway Diagram:

Ariadne Genomics Inc. NADH Hadha 3-ketoacyl-CoA Acaa2 3-hydroxyacyl-CoA Hadh Echs1 FADH2 CoQ e2 e1 Etfdh Etfb Cpt2 Slc25a20 Acs Cpt1 Acad CoQ ---> oxidative phosphorylation pathway carnitine-in carnitine-out acylcarnitine translocated fatty acyl-CoA Hadhb NAD ---> NADH NAD translocated fatty acyl-CoA ---> trans-2-enoyl-CoA fatty acids ---> fatty acyl-CoA 3-ketoacyl-CoA ---> acyl-CoA - 2C 3-hydroxyacyl-CoA <--> trans-2-enoyl-CoA 3-hydroxyacyl-CoA <--> 3-ketoacyl-CoA trans-2-enoyl-CoA fatty acids fatty acyl-CoA ---> acylcarnitine carnitine-out ---> acylcarnitine carnitine-in ---> carnitine-out acylcarnitine ---> carnitine-in acylcarnitine ---> translocated fatty acyl-CoA FADH2 ---> e1 FADH2 ---> e2 e1 ---> CoQ e2 ---> CoQ acetyl-CoA ---> citrate cycle pathway acetyl-CoA ---> ketone bodies metabolic pathway acyl-CoA - 2C ---> translocated fatty acyl-CoA 3-ketoacyl-CoA ---> acetyl-CoA FAD FAD ---> FADH2 fatty acyl-CoA acetyl-CoA acylcarnitine ---> translocated fatty acyl-CoA citrate cycle pathway ketone bodies metabolic pathway acyl-CoA - 2C Etfa oxidative phosphorylation pathway
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Genes in Pathway:


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fatty acid beta degradation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd1 ATP binding cassette subfamily D member 1 ISO SMPDB SMP:00052 NCBI chrNW_004955580:459,715...475,363
Ensembl chrNW_004955580:459,715...475,774
JBrowse link
G Abcd2 ATP binding cassette subfamily D member 2 ISO SMPDB SMP:00052 NCBI chrNW_004955505:717,800...769,702
Ensembl chrNW_004955505:721,222...798,470
JBrowse link
G Acaa2 acetyl-CoA acyltransferase 2 ISO RGD
SMPDB
PMID:11879205 RGD:2317624 SMP:00480 SMP:00481 SMP:00482 NCBI chrNW_004955402:34,857,317...34,885,169
Ensembl chrNW_004955402:34,857,317...34,885,169
JBrowse link
G Acad9 acyl-CoA dehydrogenase family member 9 ISO RGD PMID:14728676 RGD:2317589 NCBI chrNW_004955450:10,576,615...10,603,779
Ensembl chrNW_004955450:10,576,615...10,603,779
JBrowse link
G Acadl acyl-CoA dehydrogenase long chain ISO SMPDB
RGD
PMID:3968063 PMID:14728676 RGD:2317589 RGD:2317678 SMP:00480 SMP:00482 NCBI chrNW_004955457:5,266,032...5,300,632
Ensembl chrNW_004955457:5,266,033...5,300,056
JBrowse link
G Acadm acyl-CoA dehydrogenase medium chain ISO SMPDB
RGD
PMID:3968063 PMID:14728676 RGD:2317589 RGD:2317678 SMP:00481 NCBI chrNW_004955423:17,173,648...17,199,189
Ensembl chrNW_004955423:17,172,779...17,199,090
JBrowse link
G Acads acyl-CoA dehydrogenase short chain ISO RGD
SMPDB
PMID:3968063 PMID:14728676 RGD:2317589 RGD:2317678 SMP:00480 NCBI chrNW_004955455:10,928,560...10,942,748
Ensembl chrNW_004955455:10,928,560...10,942,926
JBrowse link
G Acadvl acyl-CoA dehydrogenase very long chain ISO RGD PMID:14728676 PMID:15850553 RGD:2317589 RGD:2317683 NCBI chrNW_004955467:9,684,070...9,689,454
Ensembl chrNW_004955467:9,684,250...9,689,356
JBrowse link
G Acat1 acetyl-CoA acetyltransferase 1 ISO SMPDB SMP:00480 NCBI chrNW_004955412:10,350,088...10,369,806
Ensembl chrNW_004955412:10,349,593...10,369,806
JBrowse link
G Acsl1 acyl-CoA synthetase long chain family member 1 ISO SMPDB
RGD
PMID:17762044 RGD:2317576 SMP:00052 SMP:00482 NCBI chrNW_004955403:24,190,674...24,235,354
Ensembl chrNW_004955403:24,190,674...24,236,780
JBrowse link
G Acsl3 acyl-CoA synthetase long chain family member 3 ISO RGD PMID:17762044 RGD:2317576 NCBI chrNW_004955453:10,916,423...10,963,986
Ensembl chrNW_004955453:10,913,786...10,947,963
JBrowse link
G Acsl4 acyl-CoA synthetase long chain family member 4 ISO RGD PMID:17762044 RGD:2317576 NCBI chrNW_004955490:6,143,833...6,228,395
Ensembl chrNW_004955490:6,143,833...6,228,452
JBrowse link
G Acsl5 acyl-CoA synthetase long chain family member 5 ISO RGD PMID:17762044 RGD:2317576 NCBI chrNW_004955431:17,477,113...17,524,539
Ensembl chrNW_004955431:17,477,086...17,524,539
JBrowse link
G Acsl6 acyl-CoA synthetase long chain family member 6 ISO RGD PMID:17762044 RGD:2317576 NCBI chrNW_004955408:3,336,214...3,391,117
Ensembl chrNW_004955408:3,333,392...3,392,141
JBrowse link
G Acsm1 acyl-CoA synthetase medium chain family member 1 ISO SMPDB SMP:00481 NCBI chrNW_004955442:4,133,817...4,173,932
Ensembl chrNW_004955442:4,133,308...4,174,330
JBrowse link
G Acsm2b acyl-CoA synthetase medium chain family member 2B ISO RGD PMID:17762044 RGD:2317576 NCBI chrNW_004955442:4,083,805...4,105,324
Ensembl chrNW_004955442:4,083,777...4,107,044
JBrowse link
G Acsm3 acyl-CoA synthetase medium chain family member 3 ISO RGD PMID:17762044 RGD:2317576 NCBI chrNW_004955493:73,306...95,521
Ensembl chrNW_004955493:72,633...96,348
JBrowse link
G Acsm4 acyl-CoA synthetase medium chain family member 4 ISO RGD PMID:17762044 RGD:2317576 NCBI chrNW_004955493:6,023...31,418
Ensembl chrNW_004955493:6,023...31,418
JBrowse link
G Acss1 acyl-CoA synthetase short chain family member 1 ISO RGD PMID:17762044 RGD:2317576 NCBI chrNW_004955415:31,117,542...31,154,654
Ensembl chrNW_004955415:31,117,303...31,154,654
JBrowse link
G Acss2 acyl-CoA synthetase short chain family member 2 ISO RGD PMID:17762044 RGD:2317576 NCBI chrNW_004955422:26,450,899...26,500,336
Ensembl chrNW_004955422:26,451,598...26,500,546
JBrowse link
G Acss3 acyl-CoA synthetase short chain family member 3 ISO SMPDB SMP:00480 NCBI chrNW_004955405:19,677,191...19,836,086
Ensembl chrNW_004955405:19,677,537...19,836,086
JBrowse link
G Cpt1a carnitine palmitoyltransferase 1A ISO SMPDB
RGD
PMID:19430727 RGD:2317584 SMP:00482 NCBI chrNW_004955422:17,105,887...17,159,696
Ensembl chrNW_004955422:17,109,256...17,159,838
JBrowse link
G Cpt1b carnitine palmitoyltransferase 1B ISO RGD PMID:19430727 RGD:2317584 NCBI chrNW_004955413:33,578,734...33,588,055
Ensembl chrNW_004955413:33,578,355...33,588,674
JBrowse link
G Cpt2 carnitine palmitoyltransferase 2 ISO SMPDB
RGD
PMID:19430727 RGD:2317584 SMP:00052 SMP:00482 NCBI chrNW_004955464:5,942,986...5,970,325
Ensembl chrNW_004955464:5,942,986...5,970,345
JBrowse link
G Crat carnitine O-acetyltransferase ISO SMPDB SMP:00052 NCBI chrNW_004955570:1,417,608...1,428,720
Ensembl chrNW_004955570:1,417,608...1,428,720
JBrowse link
G Crot carnitine O-octanoyltransferase ISO SMPDB SMP:00052 NCBI chrNW_004955607:379,121...413,394
Ensembl chrNW_004955607:378,439...413,394
JBrowse link
G Echs1 enoyl-CoA hydratase, short chain 1 ISO RGD
SMPDB
PMID:12379132 RGD:2317616 SMP:00480 SMP:00481 SMP:00482 NCBI chrNW_004955477:11,012,451...11,021,487
Ensembl chrNW_004955477:11,012,451...11,021,486
JBrowse link
G Etfa electron transfer flavoprotein subunit alpha ISO RGD PMID:14728676 RGD:2317589 NCBI chrNW_004955450:1,392,526...1,451,591
Ensembl chrNW_004955450:1,392,479...1,451,591
JBrowse link
G Etfb electron transfer flavoprotein subunit beta ISO RGD PMID:14728676 RGD:2317589 NCBI chrNW_004955558:1,032,743...1,046,300
Ensembl chrNW_004955558:1,032,743...1,046,300
JBrowse link
G Etfdh electron transfer flavoprotein dehydrogenase ISO RGD PMID:14728676 RGD:2317589 NCBI chrNW_004955471:12,282,601...12,308,792
Ensembl chrNW_004955471:12,289,857...12,348,167
JBrowse link
G Hadh hydroxyacyl-CoA dehydrogenase ISO SMPDB
RGD
PMID:17491019 RGD:2302227 SMP:00480 SMP:00481 SMP:00482 NCBI chrNW_004955496:1,835,034...1,861,410
Ensembl chrNW_004955496:1,835,034...1,861,407
JBrowse link
G Hadha hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha ISO SMPDB
RGD
PMID:10816122 RGD:2317625 SMP:00481 SMP:00482 NCBI chrNW_004955469:8,183,945...8,233,869
Ensembl chrNW_004955469:8,183,945...8,233,869
JBrowse link
G Hadhb hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta ISO SMPDB
RGD
PMID:10816122 RGD:2317625 SMP:00481 SMP:00482 NCBI chrNW_004955469:8,233,980...8,272,149
Ensembl chrNW_004955469:8,233,980...8,274,450
JBrowse link
G Hsd17b10 hydroxysteroid 17-beta dehydrogenase 10 ISO SMPDB SMP:00480 NCBI chrNW_004955475:478,690...481,029
Ensembl chrNW_004955475:478,690...481,029
JBrowse link
G Pex11g peroxisomal biogenesis factor 11 gamma ISO SMPDB SMP:00052 NCBI chrNW_004955563:1,737,560...1,743,854
Ensembl chrNW_004955563:1,737,560...1,743,854
JBrowse link
G Pex13 peroxisomal biogenesis factor 13 ISO SMPDB SMP:00052 NCBI chrNW_004955424:22,799,568...22,830,718
Ensembl chrNW_004955424:22,799,568...22,830,718
JBrowse link
G Pex14 peroxisomal biogenesis factor 14 ISO SMPDB SMP:00052 NCBI chrNW_004955486:2,981,026...3,129,721
Ensembl chrNW_004955486:2,980,700...3,129,721
JBrowse link
G Slc25a20 solute carrier family 25 member 20 ISO SMPDB
RGD
PMID:19430727 RGD:2317584 SMP:00052 SMP:00481 SMP:00482 NCBI chrNW_004955532:902,937...933,675
Ensembl chrNW_004955532:902,937...921,174
JBrowse link

Additional Elements in Pathway:

(includes Gene Groups, Small Molecules, Other Pathways..etc.)
Object TypePathway ObjectPathway Object Description
Gene GroupACSacyl-CoA synthetase members
Gene GroupAcadacyl-Coenzyme A dehydrogenase members
Gene GroupCPT 1carnitine palmitoyltransferase system 1 members

Pathway Gene Annotations

References Associated with the fatty acid beta degradation pathway:

Ontology Path Diagram:

paths to the root
paths to the root

Import into Pathway Studio: