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FATTY ACID BETA DEGRADATION PATHWAY (PW:0000738)
Description
The degradation of fatty acids represents an essential source of energy; a major route is the mitochondrial beta-oxidation pathway. Before beta-oxidation can proceed, fatty acids need to be 'primed' or activated. The formation of fatty acyl-CoA thioesters is catalyzed by acyl-CoA synthetases in a two-step reaction. There are several acyl-CoA synthetases named after their chain length specificity. Once activated, acyl-CoAs need to reach the mitochondrial matrix where the enzymes of the beta-oxidation pathway are located. The acyl-CoAs, particularly the long-chain ones, cannot easily pass the mitochondrial inner membrane; their translocation is made possible by the CPT system. The acyl moiety is transferred from CoA to carnitine by Cpt1 - an integral membrane protein of the outer mitochondrial membrane. Note that Cpt1 is subject to inhibition by malonyl-CoA, the substrate for the fatty acid biosynthetic pathway. The translocase (Slc25a20) facilitates the translocation of acylcarnitine across the mitochondrial inner membrane where Cpt2 catalyzes the transfer of the acyl group from carnitine to CoA. The acyl-CoA thioesters can now undergo beta-oxidation. The beta-oxidation pathway, generally described as a spiral, consists of a [repeating] cycle of four reactions that produces acetyl-CoA and an acyl-CoA that is two carbon shorter. The spiral repeats itself until the entire acyl-CoA has been broken down to acetyl-CoA. In the first reaction, acyl-CoA is dehydrogenated to trans-2-enoyl-CoA by members of the FAD-containing acyl-CoA dehydrogenase family (Acad). The family contains several members named after their chain-length specificity; of these, the long-chain acyl-CoA dehydrogenase may participate in the beta-oxidation of unsaturated fatty acids. The FADH2 produced in the reaction is re-oxidized by transferring electrons from the dehydrogenase to the FAD group of Etf and from there to Etfdh which feeds the electrons into the electron transport chain thus linking the dehydrogenases to the oxidative phosphorylation pathway culminating in ATP synthesis. In the second reaction, 2-trans-enoyl-CoA is reversibly hydrated to 3-hydroxyacyl-CoA by Echs1. 3-hydroxyacyl-CoA undergoes NAD-dependent dehydrogenation to produce 3-ketoacyl-CoA, a reaction catalyzed by Hadh. The last step involves a thiolase-mediated (Acaa2) cleavage of the thioester bond to release acetyl-CoA and an acyl-CoA which is two carbons shorter and enters another round of the spiral. The last three steps of the beta-oxidation of long-chain acyl-CoA esters - the hydratase, dehydrogenase and thiolase reactions - are carried out by a trifunctional enzyme. While the mono-enzymes are soluble matrix proteins, the trifunctional enzyme is associated with the inner mitochondrial membrane. Disorders of the beta-oxidation pathway have been associated with several conditions. To see the ontology report for GViewer, annotations and download, click here[Click to see the ontology report for associated GO term - GO:0006635, related Kegg map - map00071] ...(less)
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Pathway Diagram:
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Genes in Pathway:
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Abcd1
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ATP binding cassette subfamily D member 1
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ISO
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SMPDB |
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SMP:00052 |
NCBI chrNW_004955580:459,715...475,363
Ensembl chrNW_004955580:459,715...475,774
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| G
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Abcd2
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ATP binding cassette subfamily D member 2
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ISO
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SMPDB |
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SMP:00052 |
NCBI chrNW_004955505:717,800...769,702
Ensembl chrNW_004955505:721,222...798,470
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| G
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Acaa2
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acetyl-CoA acyltransferase 2
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ISO
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RGD SMPDB |
PMID:11879205 |
RGD:2317624 SMP:00480 SMP:00481 SMP:00482 |
NCBI chrNW_004955402:34,857,317...34,885,169
Ensembl chrNW_004955402:34,857,317...34,885,169
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| G
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Acad9
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acyl-CoA dehydrogenase family member 9
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ISO
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RGD |
PMID:14728676 |
RGD:2317589 |
NCBI chrNW_004955450:10,576,615...10,603,779
Ensembl chrNW_004955450:10,576,615...10,603,779
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| G
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Acadl
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acyl-CoA dehydrogenase long chain
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ISO
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SMPDB RGD |
PMID:3968063 PMID:14728676 |
RGD:2317589 RGD:2317678 SMP:00480 SMP:00482 |
NCBI chrNW_004955457:5,266,032...5,300,632
Ensembl chrNW_004955457:5,266,033...5,300,056
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| G
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Acadm
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acyl-CoA dehydrogenase medium chain
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ISO
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SMPDB RGD |
PMID:3968063 PMID:14728676 |
RGD:2317589 RGD:2317678 SMP:00481 |
NCBI chrNW_004955423:17,173,648...17,199,189
Ensembl chrNW_004955423:17,172,779...17,199,090
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| G
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Acads
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acyl-CoA dehydrogenase short chain
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ISO
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RGD SMPDB |
PMID:3968063 PMID:14728676 |
RGD:2317589 RGD:2317678 SMP:00480 |
NCBI chrNW_004955455:10,928,560...10,942,748
Ensembl chrNW_004955455:10,928,560...10,942,926
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| G
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Acadvl
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acyl-CoA dehydrogenase very long chain
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ISO
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RGD |
PMID:14728676 PMID:15850553 |
RGD:2317589 RGD:2317683 |
NCBI chrNW_004955467:9,684,070...9,689,454
Ensembl chrNW_004955467:9,684,250...9,689,356
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| G
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Acat1
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acetyl-CoA acetyltransferase 1
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ISO
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SMPDB |
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SMP:00480 |
NCBI chrNW_004955412:10,350,088...10,369,806
Ensembl chrNW_004955412:10,349,593...10,369,806
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| G
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Acsl1
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acyl-CoA synthetase long chain family member 1
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ISO
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SMPDB RGD |
PMID:17762044 |
RGD:2317576 SMP:00052 SMP:00482 |
NCBI chrNW_004955403:24,190,674...24,235,354
Ensembl chrNW_004955403:24,190,674...24,236,780
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| G
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Acsl3
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acyl-CoA synthetase long chain family member 3
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ISO
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RGD |
PMID:17762044 |
RGD:2317576 |
NCBI chrNW_004955453:10,916,423...10,963,986
Ensembl chrNW_004955453:10,913,786...10,947,963
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Acsl4
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acyl-CoA synthetase long chain family member 4
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ISO
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RGD |
PMID:17762044 |
RGD:2317576 |
NCBI chrNW_004955490:6,143,833...6,228,395
Ensembl chrNW_004955490:6,143,833...6,228,452
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| G
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Acsl5
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acyl-CoA synthetase long chain family member 5
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ISO
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RGD |
PMID:17762044 |
RGD:2317576 |
NCBI chrNW_004955431:17,477,113...17,524,539
Ensembl chrNW_004955431:17,477,086...17,524,539
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| G
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Acsl6
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acyl-CoA synthetase long chain family member 6
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ISO
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RGD |
PMID:17762044 |
RGD:2317576 |
NCBI chrNW_004955408:3,336,214...3,391,117
Ensembl chrNW_004955408:3,333,392...3,392,141
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| G
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Acsm1
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acyl-CoA synthetase medium chain family member 1
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ISO
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SMPDB |
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SMP:00481 |
NCBI chrNW_004955442:4,133,817...4,173,932
Ensembl chrNW_004955442:4,133,308...4,174,330
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| G
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Acsm2b
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acyl-CoA synthetase medium chain family member 2B
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ISO
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RGD |
PMID:17762044 |
RGD:2317576 |
NCBI chrNW_004955442:4,083,805...4,105,324
Ensembl chrNW_004955442:4,083,777...4,107,044
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| G
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Acsm3
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acyl-CoA synthetase medium chain family member 3
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ISO
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RGD |
PMID:17762044 |
RGD:2317576 |
NCBI chrNW_004955493:73,306...95,521
Ensembl chrNW_004955493:72,633...96,348
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| G
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Acsm4
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acyl-CoA synthetase medium chain family member 4
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ISO
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RGD |
PMID:17762044 |
RGD:2317576 |
NCBI chrNW_004955493:6,023...31,418
Ensembl chrNW_004955493:6,023...31,418
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| G
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Acss1
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acyl-CoA synthetase short chain family member 1
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ISO
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RGD |
PMID:17762044 |
RGD:2317576 |
NCBI chrNW_004955415:31,117,542...31,154,654
Ensembl chrNW_004955415:31,117,303...31,154,654
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| G
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Acss2
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acyl-CoA synthetase short chain family member 2
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ISO
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RGD |
PMID:17762044 |
RGD:2317576 |
NCBI chrNW_004955422:26,450,899...26,500,336
Ensembl chrNW_004955422:26,451,598...26,500,546
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| G
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Acss3
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acyl-CoA synthetase short chain family member 3
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ISO
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SMPDB |
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SMP:00480 |
NCBI chrNW_004955405:19,677,191...19,836,086
Ensembl chrNW_004955405:19,677,537...19,836,086
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| G
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Cpt1a
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carnitine palmitoyltransferase 1A
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ISO
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SMPDB RGD |
PMID:19430727 |
RGD:2317584 SMP:00482 |
NCBI chrNW_004955422:17,105,887...17,159,696
Ensembl chrNW_004955422:17,109,256...17,159,838
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| G
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Cpt1b
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carnitine palmitoyltransferase 1B
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ISO
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RGD |
PMID:19430727 |
RGD:2317584 |
NCBI chrNW_004955413:33,578,734...33,588,055
Ensembl chrNW_004955413:33,578,355...33,588,674
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| G
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Cpt2
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carnitine palmitoyltransferase 2
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ISO
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SMPDB RGD |
PMID:19430727 |
RGD:2317584 SMP:00052 SMP:00482 |
NCBI chrNW_004955464:5,942,986...5,970,325
Ensembl chrNW_004955464:5,942,986...5,970,345
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| G
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Crat
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carnitine O-acetyltransferase
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ISO
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SMPDB |
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SMP:00052 |
NCBI chrNW_004955570:1,417,608...1,428,720
Ensembl chrNW_004955570:1,417,608...1,428,720
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| G
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Crot
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carnitine O-octanoyltransferase
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ISO
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SMPDB |
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SMP:00052 |
NCBI chrNW_004955607:379,121...413,394
Ensembl chrNW_004955607:378,439...413,394
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| G
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Echs1
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enoyl-CoA hydratase, short chain 1
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ISO
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RGD SMPDB |
PMID:12379132 |
RGD:2317616 SMP:00480 SMP:00481 SMP:00482 |
NCBI chrNW_004955477:11,012,451...11,021,487
Ensembl chrNW_004955477:11,012,451...11,021,486
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Etfa
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electron transfer flavoprotein subunit alpha
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ISO
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RGD |
PMID:14728676 |
RGD:2317589 |
NCBI chrNW_004955450:1,392,526...1,451,591
Ensembl chrNW_004955450:1,392,479...1,451,591
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Etfb
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electron transfer flavoprotein subunit beta
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ISO
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RGD |
PMID:14728676 |
RGD:2317589 |
NCBI chrNW_004955558:1,032,743...1,046,300
Ensembl chrNW_004955558:1,032,743...1,046,300
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| G
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Etfdh
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electron transfer flavoprotein dehydrogenase
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ISO
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RGD |
PMID:14728676 |
RGD:2317589 |
NCBI chrNW_004955471:12,282,601...12,308,792
Ensembl chrNW_004955471:12,289,857...12,348,167
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| G
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Hadh
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hydroxyacyl-CoA dehydrogenase
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ISO
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SMPDB RGD |
PMID:17491019 |
RGD:2302227 SMP:00480 SMP:00481 SMP:00482 |
NCBI chrNW_004955496:1,835,034...1,861,410
Ensembl chrNW_004955496:1,835,034...1,861,407
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| G
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Hadha
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hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha
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ISO
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SMPDB RGD |
PMID:10816122 |
RGD:2317625 SMP:00481 SMP:00482 |
NCBI chrNW_004955469:8,183,945...8,233,869
Ensembl chrNW_004955469:8,183,945...8,233,869
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| G
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Hadhb
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hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta
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ISO
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SMPDB RGD |
PMID:10816122 |
RGD:2317625 SMP:00481 SMP:00482 |
NCBI chrNW_004955469:8,233,980...8,272,149
Ensembl chrNW_004955469:8,233,980...8,274,450
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| G
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Hsd17b10
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hydroxysteroid 17-beta dehydrogenase 10
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ISO
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SMPDB |
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SMP:00480 |
NCBI chrNW_004955475:478,690...481,029
Ensembl chrNW_004955475:478,690...481,029
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| G
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Pex11g
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peroxisomal biogenesis factor 11 gamma
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ISO
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SMPDB |
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SMP:00052 |
NCBI chrNW_004955563:1,737,560...1,743,854
Ensembl chrNW_004955563:1,737,560...1,743,854
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Pex13
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peroxisomal biogenesis factor 13
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ISO
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SMPDB |
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SMP:00052 |
NCBI chrNW_004955424:22,799,568...22,830,718
Ensembl chrNW_004955424:22,799,568...22,830,718
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Pex14
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peroxisomal biogenesis factor 14
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ISO
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SMPDB |
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SMP:00052 |
NCBI chrNW_004955486:2,981,026...3,129,721
Ensembl chrNW_004955486:2,980,700...3,129,721
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| G
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Slc25a20
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solute carrier family 25 member 20
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ISO
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SMPDB RGD |
PMID:19430727 |
RGD:2317584 SMP:00052 SMP:00481 SMP:00482 |
NCBI chrNW_004955532:902,937...933,675
Ensembl chrNW_004955532:902,937...921,174
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Pathway Gene Annotations |
References Associated with the fatty acid beta degradation pathway:
- Watkins PA, etal., J Lipid Res. 2007 Dec;48(12):2736-50. Epub 2007 Aug 30.
- Rufer AC, etal., Cell Mol Life Sci. 2009 Aug;66(15):2489-501. Epub 2009 May 9.
- Ghisla S and Thorpe C, Eur J Biochem. 2004 Feb;271(3):494-508.
- Eaton S, etal., Biochem Soc Trans. 2000 Feb;28(2):177-82.
- Kerner J and Hoppel C, Biochim Biophys Acta. 2000 Jun 26;1486(1):1-17.
- Kim JJ and Battaile KP, Curr Opin Struct Biol. 2002 Dec;12(6):721-8.
- Bartlett K and Eaton S, Eur J Biochem. 2004 Feb;271(3):462-9.
- Yang SY, etal., FEBS J. 2005 Oct;272(19):4874-83.
- Longo N, etal., Am J Med Genet C Semin Med Genet. 2006 May 15;142C(2):77-85.
- Soupene E and Kuypers FA, Exp Biol Med (Maywood). 2008 May;233(5):507-21. Epub 2008 Mar 28.
- Moczulski D, etal., Postepy Hig Med Dosw (Online). 2009 Jun 8;63:266-77.
- Boomgaarden I, etal., Biochem Genet. 2009 Oct;47(9-10):739-48. Epub 2009 Jul 26.
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