Echs1 (enoyl-CoA hydratase, short chain 1) - Rat Genome Database

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Gene: Echs1 (enoyl-CoA hydratase, short chain 1) Chinchilla lanigera
Analyze
Symbol: Echs1
Name: enoyl-CoA hydratase, short chain 1
RGD ID: 8876248
Description: ENCODES a protein that exhibits 3-hydroxypropionyl-CoA dehydratase activity (ortholog); enoyl-CoA hydratase activity (ortholog); INVOLVED IN fatty acid beta-oxidation (ortholog); PARTICIPATES IN 2-aminoadipic 2-oxoadipic aciduria pathway; 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyacyl-CoA dehydrogenase deficiency pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); distal 10q deletion syndrome (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: enoyl CoA hydratase, short chain, 1, mitochondrial; enoyl-CoA hydratase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547711,012,451 - 11,021,486 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547711,012,451 - 11,021,487 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Echs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547711,012,451 - 11,021,486 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547711,012,451 - 11,021,487 (-)NCBIChiLan1.0ChiLan1.0
ECHS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810133,362,485 - 133,373,354 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10133,362,485 - 133,373,354 (-)EnsemblGRCh38hg38GRCh38
GRCh3710135,175,989 - 135,186,858 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610135,025,980 - 135,036,898 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410135,064,870 - 135,075,789NCBI
Celera10128,330,716 - 128,341,541 (+)NCBICelera
Cytogenetic Map10q26.3NCBI
HuRef10128,720,102 - 128,735,596 (-)NCBIHuRef
CHM1_110135,457,879 - 135,468,770 (-)NCBICHM1_1
T2T-CHM13v2.010134,317,601 - 134,328,373 (-)NCBIT2T-CHM13v2.0
Echs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397139,685,623 - 139,696,334 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7139,685,623 - 139,696,389 (-)EnsemblGRCm39 Ensembl
GRCm387140,105,710 - 140,116,421 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7140,105,710 - 140,116,476 (-)EnsemblGRCm38mm10GRCm38
MGSCv377147,291,622 - 147,302,322 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367139,957,043 - 139,967,743 (-)NCBIMGSCv36mm8
Celera7139,903,786 - 139,914,486 (-)NCBICelera
Cytogenetic Map7F4NCBI
cM Map785.12NCBI
Echs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81204,324,679 - 204,333,506 (-)NCBIGRCr8
mRatBN7.21194,895,036 - 194,903,863 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1194,895,036 - 194,903,884 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1203,255,899 - 203,264,730 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01210,390,958 - 210,399,798 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01203,064,798 - 203,073,638 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01212,570,213 - 212,579,040 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1212,570,195 - 212,579,057 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1141,821,916 - 141,830,764 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01219,484,862 - 219,493,689 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41199,901,585 - 199,910,412 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11200,051,577 - 200,060,404 (-)NCBI
Celera1192,572,098 - 192,580,925 (-)NCBICelera
Cytogenetic Map1q41NCBI
ECHS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28145,490,950 - 145,502,671 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110145,496,307 - 145,508,028 (-)NCBINHGRI_mPanPan1
PanPan1.110134,278,388 - 134,289,308 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10134,278,388 - 134,289,308 (-)Ensemblpanpan1.1panPan2
ECHS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12840,939,856 - 40,947,694 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2840,939,961 - 40,946,167 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2840,994,970 - 41,002,785 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02841,574,846 - 41,582,544 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12841,058,933 - 41,067,149 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02841,048,529 - 41,056,202 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02841,451,431 - 41,459,252 (-)NCBIUU_Cfam_GSD_1.0
Echs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244072136,064,697 - 6,072,679 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648619,488,554 - 19,496,575 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648619,488,619 - 19,496,583 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ECHS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14141,339,364 - 141,348,994 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114141,340,320 - 141,348,870 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ECHS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12653,212,299 - 53,222,805 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605441,350,221 - 41,361,000 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Echs1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473713,328,904 - 13,338,366 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473713,329,052 - 13,338,358 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000004475   ⟹   ENSCLAP00000004392
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495547711,012,451 - 11,021,486 (-)Ensembl
RefSeq Acc Id: XM_005402067   ⟹   XP_005402124
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495547711,012,451 - 11,021,486 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005402068   ⟹   XP_005402125
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495547711,012,451 - 11,021,487 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005402124 (Get FASTA)   NCBI Sequence Viewer  
  XP_005402125 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000004392
  ENSCLAP00000004392.1
RefSeq Acc Id: XP_005402125   ⟸   XM_005402068
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005402124   ⟸   XM_005402067
- Peptide Label: isoform X1
- UniProtKB: A0A8C2URY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000004392   ⟸   ENSCLAT00000004475


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003122 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004475 ENTREZGENE
  ENSCLAT00000004475.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.12.10 UniProtKB/TrEMBL
InterPro ClpP/crotonase-like_dom_sf UniProtKB/TrEMBL
  Enoyl-CoA_hyd/isom_CS UniProtKB/TrEMBL
  Enoyl-CoA_hydra/iso UniProtKB/TrEMBL
  Enoyl-CoA_hydra_C UniProtKB/TrEMBL
NCBI Gene Echs1 ENTREZGENE
PANTHER ENOYL-COA HYDRATASE, MITOCHONDRIAL UniProtKB/TrEMBL
  ENOYL-COA HYDRATASE-RELATED UniProtKB/TrEMBL
Pfam ECH_1 UniProtKB/TrEMBL
PROSITE ENOYL_COA_HYDRATASE UniProtKB/TrEMBL
Superfamily-SCOP SSF52096 UniProtKB/TrEMBL
UniProt A0A8C2URY4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Echs1  enoyl-CoA hydratase, short chain 1    enoyl CoA hydratase, short chain, 1, mitochondrial  Symbol and/or name change 5135510 APPROVED