Acsl4 (acyl-CoA synthetase long chain family member 4) - Rat Genome Database
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Gene: Acsl4 (acyl-CoA synthetase long chain family member 4) Chinchilla lanigera
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Symbol: Acsl4
Name: acyl-CoA synthetase long chain family member 4
RGD ID: 8893762
Description: ENCODES a protein that exhibits arachidonate-CoA ligase activity (ortholog); long-chain fatty acid-CoA ligase activity (ortholog); very long-chain fatty acid-CoA ligase activity (ortholog); INVOLVED IN dendritic spine development (ortholog); embryonic process involved in female pregnancy (ortholog); fatty acid metabolic process (ortholog); PARTICIPATES IN fatty acid beta degradation pathway; ASSOCIATED WITH Animal Disease Models (ortholog); autistic disorder (ortholog); Erythema (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); lipid droplet (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: acyl-CoA synthetase long-chain family member 4; long-chain-fatty-acid--CoA ligase 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554906,143,833 - 6,228,452 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554906,143,833 - 6,228,395 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Acsl4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554906,143,833 - 6,228,452 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554906,143,833 - 6,228,395 (+)NCBIChiLan1.0ChiLan1.0
ACSL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX109,624,244 - 109,733,403 (-)EnsemblGRCh38hg38GRCh38
GRCh38X109,641,335 - 109,733,325 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X108,884,564 - 108,976,486 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37X108,884,564 - 108,976,621 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X108,771,220 - 108,863,277 (-)NCBINCBI36hg18NCBI36
Build 34X108,690,710 - 108,782,764NCBI
CeleraX109,364,202 - 109,456,256 (-)NCBI
Cytogenetic MapXq23NCBI
HuRefX98,507,227 - 98,598,360 (-)NCBIHuRef
CHM1_1X108,795,825 - 108,887,899 (-)NCBICHM1_1
Acsl4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X141,100,989 - 141,173,792 (-)NCBIGRCm39mm39
GRCm38X142,317,993 - 142,390,802 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX142,317,993 - 142,390,535 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X138,752,536 - 138,825,078 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X137,564,361 - 137,636,903 (-)NCBImm8
CeleraX126,313,470 - 126,386,150 (-)NCBICelera
Cytogenetic MapXF2NCBI
Acsl4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X105,942,794 - 106,006,573 (-)NCBI
Rnor_6.0 EnsemblX113,596,239 - 113,659,944 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X113,596,247 - 113,660,024 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X112,046,187 - 112,109,974 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X36,168,547 - 36,232,162 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X36,222,015 - 36,285,631 (+)NCBI
CeleraX105,356,949 - 105,420,560 (-)NCBICelera
Cytogenetic MapXq33NCBI
ACSL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X109,219,030 - 109,311,055 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX109,206,964 - 109,310,914 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X98,731,109 - 98,841,067 (-)NCBIMhudiblu_PPA_v0panPan3
ACSL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 EnsemblX82,866,823 - 82,916,789 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1X82,864,506 - 82,943,984 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Acsl4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364995,456,985 - 5,540,115 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACSL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX89,760,865 - 89,837,678 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X89,760,863 - 89,838,103 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X105,375,895 - 105,452,684 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACSL4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X97,488,414 - 97,575,251 (-)NCBI
Acsl4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248036,272,954 - 6,372,815 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000009694   ⟹   ENSCLAP00000009565
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554906,143,833 - 6,228,452 (+)Ensembl
RefSeq Acc Id: XM_005404662   ⟹   XP_005404719
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554906,143,833 - 6,228,395 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005404663   ⟹   XP_005404720
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554906,143,834 - 6,228,395 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504536   ⟹   XP_013359990
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554906,143,834 - 6,228,395 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005404719 (Get FASTA)   NCBI Sequence Viewer  
  XP_005404720 (Get FASTA)   NCBI Sequence Viewer  
  XP_013359990 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005404719   ⟸   XM_005404662
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005404720   ⟸   XM_005404663
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013359990   ⟸   XM_013504536
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000009565   ⟸   ENSCLAT00000009694


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006635 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000009565 ENTREZGENE
Ensembl Transcript ENSCLAT00000009694 ENTREZGENE
NCBI Gene Acsl4 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-20 Acsl4  acyl-CoA synthetase long chain family member 4    acyl-CoA synthetase long-chain family member 4  Symbol and/or name change 5135510 APPROVED