Etfdh (electron transfer flavoprotein dehydrogenase) - Rat Genome Database

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Gene: Etfdh (electron transfer flavoprotein dehydrogenase) Chinchilla lanigera
Analyze
Symbol: Etfdh
Name: electron transfer flavoprotein dehydrogenase
RGD ID: 9015824
Description: ENCODES a protein that exhibits 4 iron, 4 sulfur cluster binding (ortholog); electron transfer activity (ortholog); electron-transferring-flavoprotein dehydrogenase activity (ortholog); INVOLVED IN electron transport chain (ortholog); fatty acid beta-oxidation using acyl-CoA dehydrogenase (ortholog); response to oxidative stress (ortholog); PARTICIPATES IN fatty acid beta degradation pathway; ASSOCIATED WITH disease of metabolism (ortholog); genetic disease (ortholog); hypertrophic cardiomyopathy (ortholog); FOUND IN membrane (ortholog); mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial; electron-transferring-flavoprotein dehydrogenase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547112,289,857 - 12,348,167 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547112,282,601 - 12,308,792 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Etfdh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547112,289,857 - 12,348,167 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547112,282,601 - 12,308,792 (+)NCBIChiLan1.0ChiLan1.0
ETFDH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384158,672,296 - 158,709,623 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4158,671,968 - 158,710,742 (+)EnsemblGRCh38hg38GRCh38
GRCh374159,593,448 - 159,630,775 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364159,812,727 - 159,849,292 (+)NCBINCBI36Build 36hg18NCBI36
Build 344159,951,100 - 159,987,423NCBI
Celera4156,934,316 - 156,970,701 (+)NCBICelera
Cytogenetic Map4q32.1NCBI
HuRef4155,343,105 - 155,379,682 (+)NCBIHuRef
CHM1_14159,569,735 - 159,606,307 (+)NCBICHM1_1
T2T-CHM13v2.04162,023,044 - 162,060,372 (+)NCBIT2T-CHM13v2.0
Etfdh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39379,511,095 - 79,536,074 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl379,511,095 - 79,536,807 (-)EnsemblGRCm39 Ensembl
GRCm38379,603,788 - 79,628,767 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl379,603,788 - 79,629,500 (-)EnsemblGRCm38mm10GRCm38
MGSCv37379,407,710 - 79,432,689 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36379,689,739 - 79,721,121 (-)NCBIMGSCv36mm8
Celera379,641,935 - 79,666,883 (-)NCBICelera
Cytogenetic Map3E3NCBI
cM Map334.91NCBI
Etfdh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82167,038,707 - 167,060,758 (-)NCBIGRCr8
mRatBN7.22164,740,547 - 164,762,754 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2164,729,749 - 164,762,745 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2171,958,548 - 171,980,851 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02169,974,584 - 169,996,872 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02164,583,426 - 164,605,716 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02178,367,547 - 178,389,641 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2178,367,549 - 178,389,608 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02197,703,002 - 197,725,057 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42171,008,641 - 171,030,692 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12170,958,749 - 170,980,798 (-)NCBI
Celera2158,837,135 - 158,859,189 (-)NCBICelera
Cytogenetic Map2q33NCBI
ETFDH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23156,539,264 - 156,578,007 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14156,894,847 - 156,933,256 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04150,992,123 - 151,028,698 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14162,802,917 - 162,838,807 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4162,802,917 - 162,838,807 (+)Ensemblpanpan1.1panPan2
ETFDH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11555,752,170 - 55,781,118 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1555,752,200 - 55,792,105 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1556,114,006 - 56,142,677 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01556,495,410 - 56,525,823 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1556,495,413 - 56,525,811 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11555,734,215 - 55,762,881 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01555,833,373 - 55,862,247 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01556,147,031 - 56,175,699 (+)NCBIUU_Cfam_GSD_1.0
Etfdh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530134,381,383 - 34,406,369 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365765,140,577 - 5,165,527 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365765,140,577 - 5,165,527 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ETFDH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl847,608,772 - 47,657,436 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1847,608,499 - 47,655,889 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2850,013,348 - 50,060,554 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ETFDH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17105,214,231 - 105,252,100 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7105,213,653 - 105,254,502 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603784,921,905 - 84,959,410 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Etfdh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248483,639,294 - 3,677,517 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248483,639,559 - 3,673,771 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000006659   ⟹   ENSCLAP00000006551
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495547112,289,857 - 12,348,167 (+)Ensembl
RefSeq Acc Id: XM_005400964   ⟹   XP_005401021
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495547112,282,601 - 12,308,792 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005401021 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000006551
  ENSCLAP00000006551.1
RefSeq Acc Id: XP_005401021   ⟸   XM_005400964
- UniProtKB: A0A8C2YL28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000006551   ⟸   ENSCLAT00000006659
Protein Domains
4Fe-4S ferredoxin-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004617 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000006659 ENTREZGENE
  ENSCLAT00000006659.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.20 UniProtKB/TrEMBL
  3.30.9.90 UniProtKB/TrEMBL
  3.50.50.60 UniProtKB/TrEMBL
InterPro 4Fe4S_Fe-S-bd UniProtKB/TrEMBL
  ETF-QO UniProtKB/TrEMBL
  ETF-QO/FixC_UQ-bd UniProtKB/TrEMBL
  ETF-QO/FixX_C UniProtKB/TrEMBL
  FAD/NAD-bd_sf UniProtKB/TrEMBL
NCBI Gene LOC102018591 ENTREZGENE
PANTHER ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR10617 UniProtKB/TrEMBL
Pfam ETF_QO UniProtKB/TrEMBL
  ETFQO_UQ-bd UniProtKB/TrEMBL
  NAD_binding_8 UniProtKB/TrEMBL
PROSITE 4FE4S_FER_2 UniProtKB/TrEMBL
Superfamily-SCOP 4Fe-4S ferredoxins UniProtKB/TrEMBL
  FAD-linked reductases, C-terminal domain UniProtKB/TrEMBL
  SSF51905 UniProtKB/TrEMBL
UniProt A0A8C2YL28 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Etfdh  electron transfer flavoprotein dehydrogenase    electron-transferring-flavoprotein dehydrogenase  Symbol and/or name change 5135510 APPROVED
2015-08-25 Etfdh  electron-transferring-flavoprotein dehydrogenase  LOC102018591  electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like  Symbol and/or name change 5135510 APPROVED