Abcd1 (ATP binding cassette subfamily D member 1) - Rat Genome Database

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Gene: Abcd1 (ATP binding cassette subfamily D member 1) Chinchilla lanigera
Analyze
Symbol: Abcd1
Name: ATP binding cassette subfamily D member 1
RGD ID: 9044597
Description: ENCODES a protein that exhibits ABC-type fatty-acyl-CoA transporter activity (ortholog); ADP binding (ortholog); ATP binding (ortholog); INVOLVED IN fatty acid beta-oxidation (ortholog); fatty acid elongation (ortholog); fatty acid homeostasis (ortholog); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; ASSOCIATED WITH Addison's disease (ortholog); adrenoleukodystrophy (ortholog); autistic disorder (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum membrane (ortholog); lysosomal membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-binding cassette sub-family D member 1; ATP-binding cassette, sub-family D (ALD), member 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580459,715 - 475,774 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955580459,715 - 475,363 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Abcd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580459,715 - 475,774 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955580459,715 - 475,363 (+)NCBIChiLan1.0ChiLan1.0
ABCD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X153,724,856 - 153,744,755 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX153,724,856 - 153,744,755 (+)EnsemblGRCh38hg38GRCh38
GRCh37X152,990,311 - 153,010,209 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X152,643,530 - 152,663,375 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X152,511,182 - 152,531,028NCBI
CeleraX153,224,004 - 153,243,898 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX141,647,579 - 141,667,479 (+)NCBIHuRef
CHM1_1X152,864,732 - 152,884,627 (+)NCBICHM1_1
T2T-CHM13v2.0X151,998,519 - 152,018,419 (+)NCBIT2T-CHM13v2.0
Abcd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X72,760,203 - 72,782,140 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX72,760,203 - 72,782,140 (+)EnsemblGRCm39 Ensembl
GRCm38X73,716,597 - 73,738,534 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX73,716,597 - 73,738,534 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X70,961,936 - 70,983,626 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X69,969,317 - 69,991,007 (+)NCBIMGSCv36mm8
CeleraX64,970,295 - 64,991,971 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.39NCBI
Abcd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X156,579,669 - 156,601,448 (+)NCBIGRCr8
mRatBN7.2X151,428,334 - 151,450,115 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX151,428,578 - 151,450,115 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX153,569,626 - 153,591,020 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,132,856 - 157,154,250 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X154,804,685 - 154,826,079 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X157,073,860 - 157,095,652 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX157,072,736 - 157,095,274 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,823,436 - 152,844,829 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X159,614,569 - 159,635,963 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1136,439,697 - 136,461,090 (-)NCBICelera
Cytogenetic MapXq37NCBI
ABCD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X153,764,997 - 153,785,252 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X153,768,686 - 153,788,864 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,275,165 - 143,295,283 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X153,162,412 - 153,182,424 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX153,162,412 - 153,182,424 (+)Ensemblpanpan1.1panPan2
ABCD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X121,545,690 - 121,564,117 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX121,545,586 - 121,563,186 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX106,875,063 - 106,895,708 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X124,687,215 - 124,707,872 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX124,687,201 - 124,705,644 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X120,456,646 - 120,477,290 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X122,971,670 - 122,992,305 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X122,733,767 - 122,754,413 (+)NCBIUU_Cfam_GSD_1.0
Abcd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X118,877,295 - 118,896,851 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936809615,139 - 635,990 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936809615,133 - 634,618 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,485,076 - 124,501,741 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,485,076 - 124,501,742 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X142,049,646 - 142,066,321 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABCD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X128,152,697 - 128,171,007 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606566,018,682 - 66,038,332 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abcd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946421,132 - 440,075 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624946421,113 - 439,961 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000002330   ⟹   ENSCLAP00000002281
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955580459,715 - 475,774 (+)Ensembl
RefSeq Acc Id: XM_005414142   ⟹   XP_005414199
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955580459,715 - 474,668 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013509678   ⟹   XP_013365132
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955580459,715 - 475,363 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005414199 (Get FASTA)   NCBI Sequence Viewer  
  XP_013365132 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000002281
  ENSCLAP00000002281.1
RefSeq Acc Id: XP_005414199   ⟸   XM_005414142
- Peptide Label: isoform X2
- UniProtKB: A0A8C2ULD0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013365132   ⟸   XM_013509678
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSCLAP00000002281   ⟸   ENSCLAT00000002330

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001650 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000002330 ENTREZGENE
  ENSCLAT00000002330.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC1_TM_dom UniProtKB/TrEMBL
  ABC_transporter-like_ATP-bd UniProtKB/TrEMBL
  ABC_transporter-like_CS UniProtKB/TrEMBL
  ABC_transporter_sub-D UniProtKB/TrEMBL
  FA_transporter UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene Abcd1 ENTREZGENE
PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER UniProtKB/TrEMBL
  PTHR11384:SF21 UniProtKB/TrEMBL
Pfam ABC_membrane_2 UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TM1F UniProtKB/TrEMBL
  ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2ULD0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Abcd1  ATP binding cassette subfamily D member 1    ATP-binding cassette, sub-family D (ALD), member 1  Symbol and/or name change 5135510 APPROVED