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ONTOLOGY REPORT - ANNOTATIONS


Term:oligosaccharide metabolic process
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Accession:GO:0009311 term browser browse the term
Definition:The chemical reactions and pathways involving oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages.
Synonyms:exact_synonym: oligosaccharide metabolism
 narrow_synonym: multicellular organismal oligosaccharide metabolic process
 alt_id: GO:0051690



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oligosaccharide metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FUT4 fucosyltransferase 4 involved_in ISO (PMID:1740457) UniProt PMID:1740457 NCBI chr21:6,386,665...6,390,109
Ensembl chr21:6,389,021...6,390,793
JBrowse link
G FUT4 fucosyltransferase 4 involved_in IEA Ensembl GO_REF:0000107
G GLA galactosidase alpha involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr  X:75,311,536...75,320,391
Ensembl chr  X:75,311,536...75,320,249
JBrowse link
G MOGS mannosyl-oligosaccharide glucosidase involved_in IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chr17:48,666,220...48,670,848
Ensembl chr17:48,667,224...48,670,646
JBrowse link
G NAGA alpha-N-acetylgalactosaminidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:23,303,950...23,312,409
Ensembl chr10:23,304,354...23,396,068
JBrowse link
G ST6GAL2 ST6 beta-galactoside alpha-2,6-sialyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:36,937,945...36,976,048
Ensembl chr10:36,941,370...36,972,012
JBrowse link
G ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:70,060,406...70,583,974
Ensembl chr 6:70,062,555...70,574,865
JBrowse link
G ST6GALNAC4 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:55,499,100...55,513,562
Ensembl chr 9:55,504,639...55,513,174
JBrowse link
G ST6GALNAC5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:69,706,717...69,867,760
Ensembl chr 6:69,709,114...69,867,648
JBrowse link
G ST6GALNAC6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:55,520,083...55,533,205
Ensembl chr 9:55,520,109...55,532,055
JBrowse link
G ST8SIA1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr27:24,879,103...25,027,014
Ensembl chr27:24,879,380...25,023,618
JBrowse link
G ST8SIA2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 3:47,588,804...47,654,853
Ensembl chr 3:47,588,797...47,655,593
JBrowse link
G ST8SIA3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 1:18,541,197...18,557,887
Ensembl chr 1:18,549,942...18,557,893
JBrowse link
G ST8SIA4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 3:9,708,130...9,801,547
Ensembl chr 3:9,708,173...9,845,015
JBrowse link
G ST8SIA5 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:44,583,638...44,656,823
Ensembl chr 7:44,591,092...44,646,048
JBrowse link
G ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 2:19,392,690...19,618,127
Ensembl chr 2:19,482,468...19,616,339
JBrowse link
cellobiose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LCT lactase involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:38,571,539...38,620,567
Ensembl chr19:38,572,058...38,620,567
JBrowse link
cyclodextrin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPC1 NPC intracellular cholesterol transporter 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5049785|PMID:21697390) MGI
Ensembl
PMID:21697390 GO_REF:0000107 MGI:5049785 NCBI chr 7:64,764,941...64,802,507
Ensembl chr 7:64,760,121...64,802,902
JBrowse link
lactose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B4GALT1 beta-1,4-galactosyltransferase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:87365|PMID:9155011) MGI
Ensembl
PMID:9155011 GO_REF:0000107 MGI:87365 NCBI chr11:50,223,880...50,276,745
Ensembl chr11:50,226,242...50,276,730
JBrowse link
G LALBA lactalbumin alpha involved_in IEA InterPro
Ensembl
UniProt
GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chr27:5,898,674...5,900,688
Ensembl chr27:5,874,879...5,900,686
JBrowse link
lactose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LCT lactase involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:38,571,539...38,620,567
Ensembl chr19:38,572,058...38,620,567
JBrowse link
maltose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MGAM maltase-glucoamylase involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:7,124,343...7,218,035
Ensembl chr16:7,125,114...7,260,241
JBrowse link
G PPM1B protein phosphatase, Mg2+/Mn2+ dependent 1B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:46,590,110...46,680,792
Ensembl chr10:46,590,079...46,665,866
JBrowse link
G SLC3A1 solute carrier family 3 member 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:46,690,555...46,737,417
Ensembl chr10:46,685,137...46,737,147
JBrowse link
oligosaccharide biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABO ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase involved_in ISO (MGI:1933875|PMID:11278752) MGI PMID:11278752 MGI:1933875 NCBI chr 9:49,746,749...49,758,317
Ensembl chr 9:49,748,693...49,758,479
JBrowse link
G B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1101659|PMID:9417047) MGI
Ensembl
PMID:9417047 GO_REF:0000107 MGI:1101659 NCBI chr34:27,081,678...27,106,863 JBrowse link
G B3GALT1 beta-1,3-galactosyltransferase 1 acts_upstream_of_or_within
involved_in
ISO (MGI:1101659|PMID:9417047)
(PMID:9582303)
MGI
UniProt
PMID:9417047 PMID:9582303 MGI:1101659 NCBI chr36:12,263,162...12,766,525
Ensembl chr36:12,761,821...12,762,801
JBrowse link
G B3GALT2 beta-1,3-galactosyltransferase 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1101659|PMID:9417047) MGI
Ensembl
PMID:9417047 GO_REF:0000107 MGI:1101659 NCBI chr38:5,868,822...5,876,539
Ensembl chr38:5,874,011...5,875,279
JBrowse link
G B4GALT1 beta-1,4-galactosyltransferase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1290117|PMID:9813328) MGI
Ensembl
PMID:9813328 GO_REF:0000107 MGI:1290117 NCBI chr11:50,223,880...50,276,745
Ensembl chr11:50,226,242...50,276,730
JBrowse link
G FUT1 fucosyltransferase 1 (H blood group) involved_in ISO (MGI:2154030|PMID:11713270) MGI PMID:11713270 MGI:2154030 NCBI chr 1:107,575,011...107,577,427
Ensembl chr 1:107,575,782...107,576,879
JBrowse link
G FUT10 fucosyltransferase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:31,186,333...31,265,463
Ensembl chr16:31,186,418...31,264,963
JBrowse link
G FUT2 fucosyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:107,616,477...107,626,968 JBrowse link
G FUT9 fucosyltransferase 9 involved_in ISO (MGI:5532797|PMID:23986452) MGI PMID:23986452 MGI:5532797 NCBI chr12:54,581,280...54,784,072
Ensembl chr12:54,771,426...54,772,505
JBrowse link
G MGAT2 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase involved_in IEA InterPro GO_REF:0000002 NCBI chr 8:26,244,894...26,247,960
Ensembl chr 8:26,245,407...26,246,747
JBrowse link
G MPDU1 mannose-P-dolichol utilization defect 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 5:32,504,644...32,507,903
Ensembl chr 5:32,504,695...32,507,291
JBrowse link
G ST3GAL2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:76,377,782...76,427,998
Ensembl chr 5:76,379,702...76,394,525
JBrowse link
G ST3GAL4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:8,132,663...8,160,008
Ensembl chr 5:8,133,085...8,141,254
JBrowse link
G ST6GALNAC1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2153262|PMID:10788794) MGI
TreeGrafter
Ensembl
PMID:10788794 GO_REF:0000107 GO_REF:0000118 MGI:2153262 NCBI chr 9:4,098,881...4,124,417
Ensembl chr 9:4,101,050...4,123,896
JBrowse link
G ST6GALNAC5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 involved_in ISO (MGI:5284811|PMID:12668675) BHF-UCL PMID:12668675 MGI:5284811 NCBI chr 6:69,706,717...69,867,760
Ensembl chr 6:69,709,114...69,867,648
JBrowse link
G ST6GALNAC6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:55,520,083...55,533,205
Ensembl chr 9:55,520,109...55,532,055
JBrowse link
oligosaccharide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTBS chitobiase involved_in ISO
IEA
RGD
TreeGrafter
PMID:2751306 GO_REF:0000118 RGD:2301430 NCBI chr 6:63,308,013...63,342,697
Ensembl chr 6:63,308,420...63,342,266
JBrowse link
G GBA3 glucosylceramidase beta 3 involved_in ISO (PMID:26193330) CAFA PMID:26193330 NCBI chr 3:87,080,351...87,190,931
Ensembl chr 3:87,081,134...87,190,987
JBrowse link
G GM2A ganglioside GM2 activator acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1203907|PMID:9584189) MGI
Ensembl
PMID:9584189 GO_REF:0000107 MGI:1203907 NCBI chr 4:58,002,438...58,016,003
Ensembl chr 4:58,003,946...58,015,753
JBrowse link
G GNG5 G protein subunit gamma 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:63,389,991...63,398,797
Ensembl chr12:3,966,947...3,967,377
JBrowse link
G HEXB hexosaminidase subunit beta acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1331265|PMID:10021458), (MGI:3573807|PMID:15748167) MGI
Ensembl
PMID:10021458 PMID:15748167 GO_REF:0000107 MGI:1331265 MGI:3573807 NCBI chr 2:57,221,809...57,248,432
Ensembl chr 2:57,222,186...57,248,417
JBrowse link
G MAN2B1 mannosidase alpha class 2B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:49,446,162...49,461,812 JBrowse link
G MAN2B2 mannosidase alpha class 2B member 2 involved_in ISO (MGI:6269084|PMID:29773673) MGI PMID:29773673 MGI:6269084 NCBI chr 3:58,669,585...58,702,555 JBrowse link
G MAN2C1 mannosidase alpha class 2C member 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr30:38,218,086...38,230,745
Ensembl chr30:38,218,567...38,229,041
JBrowse link
G MANBA mannosidase beta involved_in ISO (MGI:57603|PMID:3447593) MGI PMID:3447593 MGI:57603 NCBI chr32:24,052,078...24,167,565
Ensembl chr32:24,038,920...24,167,535
JBrowse link
G NEU1 neuraminidase 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr12:1,323,659...1,327,989
Ensembl chr12:1,323,877...1,328,520
JBrowse link
G NEU2 neuraminidase 2 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr25:44,563,664...44,596,837
Ensembl chr25:44,563,411...44,595,653
JBrowse link
G NEU3 neuraminidase 3 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr21:23,456,424...23,484,872 JBrowse link
G NEU4 neuraminidase 4 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr25:51,594,865...51,602,500 JBrowse link
sucrose biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBP1 fructose-bisphosphatase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:72,099,886...72,125,266
Ensembl chr 1:72,099,881...72,125,224
JBrowse link
G FBP2 fructose-bisphosphatase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:72,136,072...72,168,487
Ensembl chr 1:72,136,106...72,184,795
JBrowse link
sucrose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPM1B protein phosphatase, Mg2+/Mn2+ dependent 1B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:46,590,110...46,680,792
Ensembl chr10:46,590,079...46,665,866
JBrowse link
G SI sucrase-isomaltase involved_in IEA Ensembl GO_REF:0000107 NCBI chr34:30,284,869...30,373,749
Ensembl chr34:30,284,858...30,373,780
JBrowse link
G SLC3A1 solute carrier family 3 member 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:46,690,555...46,737,417
Ensembl chr10:46,685,137...46,737,147
JBrowse link
trehalose catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PGGHG protein-glucosylgalactosylhydroxylysine glucosidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr18:25,443,387...25,449,288
Ensembl chr18:25,443,387...25,449,405
JBrowse link
G TREH trehalase involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 5:15,085,038...15,090,667
Ensembl chr 5:15,071,802...15,090,522
JBrowse link
trehalose metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TREH trehalase involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:15,085,038...15,090,667
Ensembl chr 5:15,071,802...15,090,522
JBrowse link
trehalose metabolism in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRAF B-Raf proto-oncogene, serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:8,222,909...8,318,179
Ensembl chr16:8,222,907...8,317,906
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17869
    metabolic process 10919
      organic substance metabolic process 10462
        carbohydrate metabolic process 601
          oligosaccharide metabolic process 55
            6-alpha-maltosylglucose metabolic process + 0
            ajugose metabolic process + 0
            cellodextrin metabolic process + 0
            cellooligosaccharide metabolic process + 0
            cellotriose metabolic process + 0
            cyclodextrin metabolic process + 1
            disaccharide metabolic process + 12
            lipopolysaccharide core region metabolic process + 0
            maltoheptaose metabolic process + 0
            oligosaccharide biosynthetic process + 19
            oligosaccharide catabolic process + 20
            raffinose metabolic process + 0
            stachyose metabolic process + 0
            verbascose metabolic process + 0
paths to the root