B4GALT1 (beta-1,4-galactosyltransferase 1) - Rat Genome Database

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Gene: B4GALT1 (beta-1,4-galactosyltransferase 1) Canis lupus familiaris
Analyze
Symbol: B4GALT1
Name: beta-1,4-galactosyltransferase 1
RGD ID: 12303954
Description: ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); identical protein binding (ortholog); INVOLVED IN acute inflammatory response (ortholog); angiogenesis involved in wound healing (ortholog); binding of sperm to zona pellucida (ortholog); PARTICIPATES IN galactose metabolic pathway; galactosemia pathway; Glut1 deficiency syndrome pathway; ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IId (ortholog); FOUND IN basolateral plasma membrane (inferred); brush border membrane (inferred); cell surface (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11150,223,880 - 50,276,745 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1150,226,242 - 50,276,730 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1148,852,300 - 48,904,681 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01151,162,293 - 51,214,628 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1151,144,069 - 51,214,773 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11149,827,305 - 49,879,364 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01149,693,975 - 49,746,100 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01150,459,162 - 50,511,219 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
B4GALT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11150,223,880 - 50,276,745 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1150,226,242 - 50,276,730 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1148,852,300 - 48,904,681 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01151,162,293 - 51,214,628 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1151,144,069 - 51,214,773 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11149,827,305 - 49,879,364 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01149,693,975 - 49,746,100 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01150,459,162 - 50,511,219 (-)NCBIUU_Cfam_GSD_1.0
B4GALT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38933,104,077 - 33,185,089 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl933,100,493 - 33,167,336 (-)EnsemblGRCh38hg38GRCh38
GRCh37933,104,075 - 33,167,334 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36933,100,642 - 33,157,236 (-)NCBINCBI36Build 36hg18NCBI36
Build 34933,100,641 - 33,157,231NCBI
Celera933,041,647 - 33,098,362 (-)NCBICelera
Cytogenetic Map9p21.1NCBI
HuRef933,068,632 - 33,125,120 (-)NCBIHuRef
CHM1_1933,110,422 - 33,167,124 (-)NCBICHM1_1
T2T-CHM13v2.0933,120,636 - 33,185,969 (-)NCBIT2T-CHM13v2.0
B4galt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39440,804,602 - 40,855,711 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl440,804,602 - 40,854,005 (-)EnsemblGRCm39 Ensembl
GRCm38440,804,602 - 40,853,984 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl440,804,602 - 40,854,005 (-)EnsemblGRCm38mm10GRCm38
MGSCv37440,751,635 - 40,801,031 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36440,993,273 - 41,042,669 (-)NCBIMGSCv36mm8
Celera440,465,334 - 40,514,995 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map420.46NCBI
B4galt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8560,731,601 - 60,778,456 (-)NCBIGRCr8
mRatBN7.2555,935,614 - 55,982,461 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl555,935,615 - 55,982,461 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx557,902,532 - 57,949,398 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0559,721,688 - 59,768,553 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0559,715,682 - 59,762,877 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0557,121,768 - 57,168,610 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl557,121,769 - 57,168,610 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0561,653,278 - 61,700,179 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4558,196,388 - 58,243,231 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera554,547,735 - 54,594,543 (-)NCBICelera
Cytogenetic Map5q22NCBI
B4galt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554722,490,661 - 2,536,317 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554722,490,649 - 2,536,053 (+)NCBIChiLan1.0ChiLan1.0
B4GALT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21191,435,685 - 91,492,756 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1991,441,627 - 91,498,698 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0932,889,124 - 32,945,759 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1933,697,551 - 33,754,192 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl933,691,733 - 33,754,192 (-)Ensemblpanpan1.1panPan2
B4galt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947165,112,211 - 165,166,434 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365241,659,608 - 1,714,102 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365241,659,791 - 1,713,971 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B4GALT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1033,317,305 - 33,381,285 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11033,317,295 - 33,381,285 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21037,574,201 - 37,635,284 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103219294
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11247,104,750 - 47,162,157 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1247,104,789 - 47,162,173 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366703211,002 - 21,137 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B4galt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473637,848,117 - 37,927,980 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473637,848,431 - 37,927,291 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in B4GALT1
402 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000002903   ⟹   ENSCAFP00000002691
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1150,226,242 - 50,276,730 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845035612   ⟹   ENSCAFP00845027858
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1151,144,069 - 51,214,773 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845035682   ⟹   ENSCAFP00845027917
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1151,162,295 - 51,214,773 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845035733   ⟹   ENSCAFP00845027958
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1151,162,295 - 51,214,769 (-)Ensembl
RefSeq Acc Id: XM_038490488   ⟹   XP_038346416
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11149,827,305 - 49,879,364 (-)NCBI
RefSeq Acc Id: XM_038552598   ⟹   XP_038408526
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01150,459,162 - 50,511,219 (-)NCBI
RefSeq Acc Id: XM_038616458   ⟹   XP_038472386
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01149,693,975 - 49,746,100 (-)NCBI
RefSeq Acc Id: XM_038681929   ⟹   XP_038537857
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01151,162,293 - 51,214,628 (-)NCBI
RefSeq Acc Id: XM_538701   ⟹   XP_538701
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11150,223,880 - 50,276,745 (-)NCBI
Dog10K_Boxer_Tasha1148,852,300 - 48,904,681 (-)NCBI
Sequence:
RefSeq Acc Id: XP_538701   ⟸   XM_538701
- UniProtKB: A0A8C0MG32 (UniProtKB/TrEMBL),   A0A8I3S4B9 (UniProtKB/TrEMBL),   A0A8C0R1L9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000002691   ⟸   ENSCAFT00000002903
RefSeq Acc Id: XP_038346416   ⟸   XM_038490488
RefSeq Acc Id: XP_038472386   ⟸   XM_038616458
RefSeq Acc Id: XP_038537857   ⟸   XM_038681929
- UniProtKB: A0A8C0MG32 (UniProtKB/TrEMBL),   A0A8I3S4B9 (UniProtKB/TrEMBL),   A0A8C0R1L9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038408526   ⟸   XM_038552598
- UniProtKB: A0A8C0MG32 (UniProtKB/TrEMBL),   A0A8C0R1L9 (UniProtKB/TrEMBL),   A0A8I3S4B9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845027858   ⟸   ENSCAFT00845035612
Ensembl Acc Id: ENSCAFP00845027917   ⟸   ENSCAFT00845035682
Ensembl Acc Id: ENSCAFP00845027958   ⟸   ENSCAFT00845035733
Promoters
RGD ID:13685226
Promoter ID:EPDNEW_C3294
Type:multiple initiation site
Name:B4GALT1_2
Description:beta-1,4-galactosyltransferase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_C3295  
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11150,276,720 - 50,276,780EPDNEW
RGD ID:13685227
Promoter ID:EPDNEW_C3295
Type:initiation region
Name:B4GALT1_1
Description:beta-1,4-galactosyltransferase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_C3294  
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11150,276,890 - 50,276,950EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001840 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030006955 UniProtKB/TrEMBL
  ENSCAFG00040006712 UniProtKB/TrEMBL
  ENSCAFG00845020211 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000002903.5 UniProtKB/TrEMBL
  ENSCAFT00000101774.1 UniProtKB/TrEMBL
  ENSCAFT00030012797.1 UniProtKB/TrEMBL
  ENSCAFT00030012832.1 UniProtKB/TrEMBL
  ENSCAFT00040012480.1 UniProtKB/TrEMBL
  ENSCAFT00845035612.1 UniProtKB/TrEMBL
  ENSCAFT00845035682 ENTREZGENE
  ENSCAFT00845035682.1 UniProtKB/TrEMBL
  ENSCAFT00845035733.1 UniProtKB/TrEMBL
InterPro Galactosyl_T UniProtKB/TrEMBL
  Galactosyl_T_C UniProtKB/TrEMBL
  Galactosyl_T_N UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene B4GALT1 ENTREZGENE
PANTHER BETA-1,4-GALACTOSYLTRANSFERASE 1 UniProtKB/TrEMBL
  PTHR19300 UniProtKB/TrEMBL
Pfam Glyco_transf_7C UniProtKB/TrEMBL
  Glyco_transf_7N UniProtKB/TrEMBL
PRINTS B14GALTRFASE UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A8C0MFY9_CANLF UniProtKB/TrEMBL
  A0A8C0MG32 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0R1L9 ENTREZGENE
  A0A8I3P829_CANLF UniProtKB/TrEMBL
  A0A8I3S1K5_CANLF UniProtKB/TrEMBL
  A0A8I3S4B9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PRD0_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38349 ENTREZGENE