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ONTOLOGY REPORT - ANNOTATIONS

Term:endosome organization
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Accession:GO:0007032 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of endosomes.
Synonyms:exact_synonym: endosome organisation
 related_synonym: endosome organization and biogenesis

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endosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aktip AKT interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:6,139,875...6,150,132
Ensembl chrNW_004936475:6,139,875...6,150,130 		JBrowse link
G Arfgef2 ADP ribosylation factor guanine nucleotide exchange factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:5,172,752...5,262,823
Ensembl chrNW_004936514:5,172,584...5,262,836 		JBrowse link
G Cc2d1a coiled-coil and C2 domain containing 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26720614) Ensembl
MGI		 PMID:26720614 GO_REF:0000107 NCBI chrNW_004936659:2,611,621...2,627,071
Ensembl chrNW_004936659:2,613,365...2,626,666 		JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936610:2,282,925...2,320,554
Ensembl chrNW_004936610:2,281,066...2,321,211 		JBrowse link
G Dnajc13 DnaJ heat shock protein family (Hsp40) member C13 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936529:5,768,229...5,883,841
Ensembl chrNW_004936529:5,785,538...5,883,097 		JBrowse link
G Dnm1 dynamin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:15,767,897...15,797,722
Ensembl chrNW_004936487:15,767,897...15,801,211 		JBrowse link
G Exoc8 exocyst complex component 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:19,403,458...19,407,202
Ensembl chrNW_004936484:19,403,458...19,405,197 		JBrowse link
G Fhip1b FHF complex subunit HOOK interacting protein 1B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936842:280,718...306,311
Ensembl chrNW_004936842:280,718...306,285 		JBrowse link
G Hook1 hook microtubule tethering protein 1 involved_in ISO (PMID:18799622) UniProt PMID:18799622 NCBI chrNW_004936522:2,102,787...2,159,525 JBrowse link
G Hook2 hook microtubule tethering protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:1,869,622...1,879,213
Ensembl chrNW_004936659:1,869,622...1,879,213 		JBrowse link
G Hook3 hook microtubule tethering protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937108:873...110,949
Ensembl chrNW_004937108:60...110,939 		JBrowse link
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:1,446,794...1,459,590
Ensembl chrNW_004936498:1,442,754...1,459,673 		JBrowse link
G Laptm4b lysosomal protein transmembrane 4 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:44,917,462...44,981,773
Ensembl chrNW_004936470:44,914,011...44,982,065 		JBrowse link
G LOC101956281 annexin A8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936554:7,696,433...7,712,801 JBrowse link
G Pheta1 PH domain containing endocytic trafficking adaptor 1 involved_in ISO (PMID:21233288) UniProt PMID:21233288 NCBI chrNW_004936558:4,066,832...4,073,906 JBrowse link
G Pheta2 PH domain containing endocytic trafficking adaptor 2 involved_in ISO (PMID:21233288) UniProt PMID:21233288 NCBI chrNW_004936718:50,354...55,699 JBrowse link
G Pi4k2a phosphatidylinositol 4-kinase type 2 alpha involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936636:2,054,672...2,083,580
Ensembl chrNW_004936636:2,053,826...2,083,633 		JBrowse link
G Pi4k2b phosphatidylinositol 4-kinase type 2 beta involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936477:4,244,888...4,273,569
Ensembl chrNW_004936477:4,245,501...4,273,571 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 ISO RGD PMID:12453151 RGD:2303129 NCBI chrNW_004936517:4,009,938...4,145,518
Ensembl chrNW_004936517:4,033,247...4,145,422 		JBrowse link
G Plekha3 pleckstrin homology domain containing A3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936509:7,693,287...7,717,259
Ensembl chrNW_004936509:7,693,287...7,718,088 		JBrowse link
G Plekhf1 pleckstrin homology and FYVE domain containing 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936570:5,658,052...5,666,711
Ensembl chrNW_004936570:5,658,052...5,666,358 		JBrowse link
G Plekhf2 pleckstrin homology and FYVE domain containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936544:8,063,374...8,086,104
Ensembl chrNW_004936544:8,063,392...8,084,956 		JBrowse link
G Plekhj1 pleckstrin homology domain containing J1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:1,333,103...1,335,023
Ensembl chrNW_004936588:1,333,099...1,335,074 		JBrowse link
G Rab22a RAB22A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:907,359...963,490
Ensembl chrNW_004936530:907,400...963,488 		JBrowse link
G Rab5a RAB5A, member RAS oncogene family involved_in ISO PMID:8043272 ParkinsonsUK-UCL PMID:8043272 RGD:2306269 NCBI chrNW_004936473:12,238,226...12,267,339
Ensembl chrNW_004936473:12,238,156...12,269,089 		JBrowse link
G Rab5b RAB5B, member RAS oncogene family involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7789520) Ensembl
MGI		 PMID:7789520 GO_REF:0000107 NCBI chrNW_004936646:386,958...408,265
Ensembl chrNW_004936646:386,833...410,192 		JBrowse link
G Rab5c RAB5C, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:7789520) MGI PMID:7789520 NCBI chrNW_004936490:16,962,793...16,985,006
Ensembl chrNW_004936490:16,960,917...16,985,022 		JBrowse link
G Rnf26 ring finger protein 26 involved_in ISO (PMID:27368102) UniProt PMID:27368102 NCBI chrNW_004936542:4,265,226...4,268,037 JBrowse link
G Snx10 sorting nexin 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:3,048,801...3,113,610
Ensembl chrNW_004936478:3,048,691...3,114,876 		JBrowse link
G Snx33 sorting nexin 33 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:34,414,086...34,425,236
Ensembl chrNW_004936471:34,414,474...34,428,784 		JBrowse link
G Sqstm1 sequestosome 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936739:943,080...955,296
Ensembl chrNW_004936739:938,745...955,263 		JBrowse link
G Stx6 syntaxin 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14668490) Ensembl
MGI		 PMID:14668490 GO_REF:0000107 NCBI chrNW_004936481:8,362,059...8,405,228
Ensembl chrNW_004936481:8,362,050...8,399,737 		JBrowse link
G Tmem127 transmembrane protein 127 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24334765) Ensembl
MGI		 PMID:24334765 GO_REF:0000107 NCBI chrNW_004936744:344,356...359,086
Ensembl chrNW_004936744:344,356...359,044 		JBrowse link
G Usp50 ubiquitin specific peptidase 50 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:12,522,361...12,552,611
Ensembl chrNW_004936471:12,521,731...12,552,346 		JBrowse link
G Usp8 ubiquitin specific peptidase 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:12,463,189...12,524,148
Ensembl chrNW_004936471:12,463,120...12,520,674 		JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936542:4,022,928...4,035,577
Ensembl chrNW_004936542:4,023,134...4,035,260 		JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14668490) Ensembl
MGI
TreeGrafter		 PMID:14668490 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:4,289,487...4,297,634
Ensembl chrNW_004936471:4,289,415...4,298,852 		JBrowse link
G Vps33b VPS33B late endosome and lysosome associated involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:16,007,448...16,031,353
Ensembl chrNW_004936483:16,007,465...16,032,392 		JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26720614) Ensembl
MGI		 PMID:26720614 GO_REF:0000107 NCBI chrNW_004936475:19,432,311...19,444,223
Ensembl chrNW_004936475:19,432,229...19,444,223 		JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10637304)
(PMID:26720614)		 Ensembl
MGI		 PMID:10637304 PMID:26720614 GO_REF:0000107 NCBI chrNW_004936497:2,126,064...2,161,451
Ensembl chrNW_004936497:2,126,061...2,161,485 		JBrowse link
G Washc1 WASH complex subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26965651) Ensembl
MGI		 PMID:26965651 GO_REF:0000107 NCBI chrNW_004936606:209,289...228,986 JBrowse link
G Washc4 WASH complex subunit 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936492:9,527,889...9,585,345
Ensembl chrNW_004936492:9,530,674...9,585,462 		JBrowse link
G Washc5 WASH complex subunit 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936470:22,667,354...22,725,538
Ensembl chrNW_004936470:22,667,127...22,725,749 		JBrowse link
endosomal lumen acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp11 aquaporin 11 acts_upstream_of_or_within ISO (PMID:16107722) MGI PMID:16107722 NCBI chrNW_004936498:6,213,583...6,237,273 JBrowse link
G Faslg Fas ligand ISO RGD PMID:18045865 RGD:2315735 NCBI chrNW_004936481:14,789,547...14,795,780 JBrowse link
G Rnasek ribonuclease K involved_in ISO (PMID:26212330) UniProt PMID:26212330 NCBI chrNW_004936595:284,313...286,167
Ensembl chrNW_004936595:284,151...286,167 		JBrowse link
G Tmem9 transmembrane protein 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:3,232,628...3,250,596
Ensembl chrNW_004936567:3,225,511...3,250,684 		JBrowse link
endosome membrane tubulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coro1c coronin 1C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936769:555,719...637,420
Ensembl chrNW_004936769:553,642...637,008 		JBrowse link
G Tmcc1 transmembrane and coiled-coil domain family 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936602:675,911...831,516
Ensembl chrNW_004936602:676,127...831,566 		JBrowse link
intralumenal vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rilp Rab interacting lysosomal protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:7,775,942...7,779,563
Ensembl chrNW_004936538:7,775,942...7,779,365 		JBrowse link
G Snx3 sorting nexin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936564:4,472,171...4,520,732
Ensembl chrNW_004936564:4,471,652...4,520,785 		JBrowse link
multivesicular body assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab11a RAB11A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:26,089,216...26,111,245
Ensembl chrNW_004936471:26,088,852...26,113,433 		JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:19,432,311...19,444,223
Ensembl chrNW_004936475:19,432,229...19,444,223 		JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:2,126,064...2,161,451
Ensembl chrNW_004936497:2,126,061...2,161,485 		JBrowse link
multivesicular body organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab27a RAB27A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:16,738,204...16,815,561
Ensembl chrNW_004936471:16,738,230...16,815,943 		JBrowse link
negative regulation of intralumenal vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:12,118,538...12,913,664
Ensembl chrNW_004936489:12,120,678...13,327,872 		JBrowse link
positive regulation of endosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Synj1 synaptojanin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:9,484,571...9,565,980
Ensembl chrNW_004936500:9,484,586...9,566,100 		JBrowse link
regulation of endosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tom1 target of myb1 membrane trafficking protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:5,073,274...5,103,733
Ensembl chrNW_004936492:5,073,191...5,103,739 		JBrowse link
synaptic vesicle to endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stx12 syntaxin 12 involved_in ISO PMID:17004320 SynGO PMID:17004320 RGD:12050136 NCBI chrNW_004936474:12,019,099...12,057,028
Ensembl chrNW_004936474:12,019,041...12,060,213 		JBrowse link
G Stx6 syntaxin 6 involved_in ISO PMID:17004320 SynGO PMID:17004320 RGD:12050136 NCBI chrNW_004936481:8,362,059...8,405,228
Ensembl chrNW_004936481:8,362,050...8,399,737 		JBrowse link
G Stx7 syntaxin 7 involved_in ISO (PMID:34408265) SynGO PMID:34408265 NCBI chrNW_004936560:464,667...512,322
Ensembl chrNW_004936560:464,617...513,009 		JBrowse link
G Vamp4 vesicle associated membrane protein 4 involved_in ISO PMID:17004320
PMID:26607000		 SynGO PMID:17004320 PMID:26607000 RGD:11058152 RGD:12050136 NCBI chrNW_004936481:15,480,865...15,515,851
Ensembl chrNW_004936481:15,480,879...15,516,945 		JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in ISO PMID:17004320 SynGO PMID:17004320 RGD:12050136 NCBI chrNW_004936486:3,010,169...3,353,512
Ensembl chrNW_004936486:3,010,490...3,347,424 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15971
    cellular process 15075
      cellular component organization or biogenesis 6484
        cellular component organization 6272
          endomembrane system organization 563
            endosome organization 60
              endosomal lumen acidification 4
              endosome membrane tubulation 2
              intralumenal vesicle formation + 3
              multivesicular body organization + 4
              negative regulation of endosome organization + 1
              positive regulation of endosome organization + 1
              regulation of endosome organization + 3
              synaptic vesicle to endosome fusion + 5
Path 2
Term Annotations click to browse term
  biological_process 15971
    cellular process 15075
      cellular component organization or biogenesis 6484
        cellular component organization 6272
          organelle organization 3509
            vesicle organization 347
              endosome organization 60
                endosomal lumen acidification 4
                endosome membrane tubulation 2
                intralumenal vesicle formation + 3
                multivesicular body organization + 4
                negative regulation of endosome organization + 1
                positive regulation of endosome organization + 1
                regulation of endosome organization + 3
                synaptic vesicle to endosome fusion + 5
paths to the root