Rab22a (RAB22A, member RAS oncogene family) - Rat Genome Database

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Gene: Rab22a (RAB22A, member RAS oncogene family) Ictidomys tridecemlineatus
Analyze
Symbol: Rab22a
Name: RAB22A, member RAS oncogene family
RGD ID: 12667913
Description: ENCODES a protein that exhibits GDP binding (inferred); GTP binding (inferred); GTPase activity (inferred); INVOLVED IN endocytosis (inferred); endosome organization (inferred); regulation of vesicle size (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN actin cytoskeleton (inferred); early endosome (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras-related protein Rab-22A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640182,342,731 - 182,399,438 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936530907,400 - 963,488 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936530907,359 - 963,490 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Rab22a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640182,342,731 - 182,399,438 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936530907,400 - 963,488 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936530907,359 - 963,490 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB22A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382058,309,715 - 58,367,507 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2058,309,715 - 58,367,507 (+)EnsemblGRCh38hg38GRCh38
GRCh372056,884,771 - 56,942,563 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362056,318,177 - 56,375,969 (+)NCBINCBI36Build 36hg18NCBI36
Build 342056,318,176 - 56,375,968NCBI
Celera2053,625,236 - 53,683,029 (+)NCBICelera
Cytogenetic Map20q13.32NCBI
HuRef2053,667,419 - 53,725,442 (+)NCBIHuRef
CHM1_12056,786,311 - 56,844,104 (+)NCBICHM1_1
T2T-CHM13v2.02060,090,659 - 60,148,468 (+)NCBIT2T-CHM13v2.0
Rab22a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392173,501,638 - 173,543,975 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2173,501,553 - 173,549,136 (+)EnsemblGRCm39 Ensembl
GRCm382173,659,836 - 173,702,186 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2173,659,760 - 173,707,343 (+)EnsemblGRCm38mm10GRCm38
MGSCv372173,485,346 - 173,527,683 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362173,302,800 - 173,347,611 (+)NCBIMGSCv36mm8
Celera2179,627,701 - 179,670,031 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map297.26NCBI
Rab22a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83182,877,746 - 182,924,400 (+)NCBIGRCr8
mRatBN7.23162,459,727 - 162,506,129 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3162,459,726 - 162,506,137 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3166,258,779 - 166,305,183 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03174,763,858 - 174,810,369 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03172,499,581 - 172,545,983 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03171,743,884 - 171,790,558 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3171,743,929 - 171,790,558 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03177,802,611 - 177,849,268 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43164,556,619 - 164,603,742 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13164,462,654 - 164,500,898 (+)NCBI
Celera3161,643,762 - 161,690,130 (+)NCBICelera
Cytogenetic Map3q42NCBI
Rab22a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554451,174,817 - 1,225,763 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554451,167,941 - 1,224,932 (-)NCBIChiLan1.0ChiLan1.0
RAB22A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22164,066,823 - 64,126,006 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12064,059,943 - 64,119,126 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02054,655,014 - 54,714,349 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12055,929,798 - 55,982,739 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2055,929,801 - 55,983,009 (+)Ensemblpanpan1.1panPan2
RAB22A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12443,109,489 - 43,157,932 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2443,108,918 - 43,157,932 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2442,355,057 - 42,404,621 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02443,974,055 - 44,023,796 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2443,973,367 - 44,024,744 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12443,076,468 - 43,125,967 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02443,197,302 - 43,246,562 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02443,855,771 - 43,905,501 (+)NCBIUU_Cfam_GSD_1.0
RAB22A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1758,514,985 - 58,572,421 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11758,514,985 - 58,572,421 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21765,726,340 - 65,783,779 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB22A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.125,761,037 - 5,820,531 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl25,768,840 - 5,820,492 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605053,815,302 - 53,874,745 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab22a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474124,636,248 - 24,690,753 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474124,637,061 - 24,696,305 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021727670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000001114   ⟹   ENSSTOP00000000994
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936530907,467 - 962,382 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000034657   ⟹   ENSSTOP00000031819
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936530907,400 - 963,488 (+)Ensembl
RefSeq Acc Id: XM_021727670   ⟹   XP_021583345
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640182,342,731 - 182,399,438 (-)NCBI
SpeTri2.0NW_004936530907,359 - 963,490 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021583345 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000994.2
  ENSSTOP00000031819.1
GenBank Protein KAG3263354 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021583345   ⟸   XM_021727670
- UniProtKB: A0A287DE57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000000994   ⟸   ENSSTOT00000001114
RefSeq Acc Id: ENSSTOP00000031819   ⟸   ENSSTOT00000034657


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001120 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001114.2 UniProtKB/TrEMBL
  ENSSTOT00000034657.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
NCBI Gene Rab22a ENTREZGENE
PANTHER RAS-RELATED PROTEIN RAB UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-5C UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A287DE57 ENTREZGENE, UniProtKB/TrEMBL
  I3LY00_ICTTR UniProtKB/TrEMBL