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Gene: Vps4a (vacuolar protein sorting 4 homolog A) Ictidomys tridecemlineatus

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Symbol:

Vps4a

Name:

vacuolar protein sorting 4 homolog A

RGD ID:

12494294

Description:

ENCODES a protein that exhibits small GTPase binding (ortholog); INVOLVED IN cell division (inferred); endosomal transport (inferred); endosomal vesicle fusion (inferred); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Chromosome 16q12 Duplication Syndrome (ortholog); CIMDAG SYNDROME (ortholog); FOUND IN early endosome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

vacuolar protein sorting-associated protein 4A

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	40,144,891 - 40,156,804 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	19,432,229 - 19,444,223 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	19,432,311 - 19,444,223 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Vps4a	Squirrel	autosomal dominant dyskeratosis congenita 6		ISO	RGD:732193	8554872	ClinVar Annotator: match by term: Dyskeratosis congenita, autosomal dominant 6	ClinVar	PMID:28492532
Vps4a	Squirrel	Chromosome 16q12 Duplication Syndrome		ISO	RGD:732193	8554872	ClinVar Annotator: match by term: Chromosome 16q12 duplication syndrome	ClinVar	PMID:25741868
Vps4a	Squirrel	CIMDAG SYNDROME		ISO	RGD:732193	8554872	ClinVar Annotator: match by term: CEREBELLAR HYPOPLASIA, CATARACTS, IMPAIRED INTELLECTUAL DEVELOPMENT, CONGENITAL MICROCEPHALY, DYSTONIA, DYSERYTHROPOIETIC more ...	ClinVar	PMID:25741868\|PMID:33186543\|PMID:33186545\|PMID:33460484
Vps4a	Squirrel	congenital dyserythropoietic anemia		ISO	RGD:732193	8554872	ClinVar Annotator: match by term: Syndromic congenital hemolytic and dyserythropoietic anemia	ClinVar	PMID:25741868\|PMID:33186543\|PMID:33186545\|PMID:33460484
Vps4a	Squirrel	genetic disease		ISO	RGD:732193	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Vps4a	Squirrel	CIMDAG SYNDROME		ISO	RGD:732193	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Vps4a	Squirrel	cell division	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	cell division	involved_in	IEA	UniProtKB-KW:KW-0132	150520179		UniProt	GO_REF:0000043
Vps4a	Squirrel	endosomal transport	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	endosomal transport	involved_in	IEA	PANTHER:PTN000553959	150520179		TreeGrafter	GO_REF:0000118
Vps4a	Squirrel	endosomal vesicle fusion	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	endosome organization	acts_upstream_of_or_within	IEA	UniProtKB:Q8VEJ9\|ensembl:ENSMUSP00000034388	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	intracellular cholesterol transport	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	late endosomal microautophagy	involved_in	IEA	UniProtKB:Q8VEJ9\|ensembl:ENSMUSP00000034388	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	midbody abscission	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	mitotic cytokinesis checkpoint signaling	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	mitotic metaphase chromosome alignment	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	multivesicular body assembly	involved_in	IEA	UniProtKB:Q8VEJ9\|ensembl:ENSMUSP00000034388	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	negative regulation of cytokinesis	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	nucleus organization	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	positive regulation of exosomal secretion	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	positive regulation of viral budding via host ESCRT complex	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	protein targeting to lysosome	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	regulation of protein localization	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	regulation of protein localization to plasma membrane	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	ubiquitin-independent protein catabolic process via the multivesicular body sorting pathway	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	vacuole organization	involved_in	IEA	PANTHER:PTN000553959	150520179		TreeGrafter	GO_REF:0000118
Vps4a	Squirrel	vesicle budding from membrane	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	vesicle uncoating	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	vesicle-mediated transport	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	viral budding from plasma membrane	involved_in	IEA	UniProtKB:Q8VEJ9\|UniProtKB:Q9UN37\|ensembl:ENSMUSP00000034388\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	viral budding via host ESCRT complex	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	viral release from host cell	involved_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Vps4a	Squirrel	centrosome	located_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	cytoplasm	located_in	IEA	UniProtKB:Q8VEJ9\|UniProtKB:Q9UN37\|ensembl:ENSMUSP00000034388\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	cytosol	located_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	early endosome		ISO	RGD:628810	9068941		RGD	PMID:11931639\|REF_RGD_ID:2290289
Vps4a	Squirrel	early endosome	located_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	endosome	located_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	endosome	located_in	IEA	UniProtKB-KW:KW-0967	150520179		UniProt	GO_REF:0000043
Vps4a	Squirrel	endosome membrane	located_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	Flemming body	located_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	late endosome	located_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	late endosome membrane	located_in	IEA	UniProtKB-SubCell:SL-0151	150520179		UniProt	GO_REF:0000044
Vps4a	Squirrel	lysosome	located_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	midbody	located_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	nucleus	located_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	perinuclear region of cytoplasm	located_in	IEA	UniProtKB:Q8VEJ9\|UniProtKB:Q9UN37\|ensembl:ENSMUSP00000034388\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	plasma membrane	located_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	spindle pole	located_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	vacuolar membrane	located_in	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Vps4a	Squirrel	ATP binding	enables	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	ATP binding	enables	IEA	InterPro:IPR003959\|InterPro:IPR003960	150520179		InterPro	GO_REF:0000002
Vps4a	Squirrel	ATP binding	enables	IEA	UniProtKB-KW:KW-0067	150520179		UniProt	GO_REF:0000043
Vps4a	Squirrel	ATP hydrolysis activity	enables	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	ATP hydrolysis activity	enables	IEA	PANTHER:PTN000553959	150520179		TreeGrafter	GO_REF:0000118
Vps4a	Squirrel	ATP hydrolysis activity	enables	IEA	InterPro:IPR003593\|InterPro:IPR003959\|InterPro:IPR003960	150520179		InterPro	GO_REF:0000002
Vps4a	Squirrel	nucleotide binding	enables	IEA	UniProtKB-KW:KW-0547	150520179		UniProt	GO_REF:0000043
Vps4a	Squirrel	protein binding	enables	ISO	UniProtKB:O75351	9068941	PMID:11563910	UniProt	PMID:11563910
Vps4a	Squirrel	protein binding	enables	ISO	UniProtKB:P46467	9068941	PMID:12594041	UniProt	PMID:12594041
Vps4a	Squirrel	protein binding	enables	ISO	UniProtKB:P13569	9068941	PMID:17110338, PMID:26618866, PMID:31324722, PMID:35156780, PMID:36012204	IntAct	PMID:17110338\|PMID:26618866\|PMID:31324722\|PMID:35156780\|PMID:36012204
Vps4a	Squirrel	protein binding	enables	ISO	UniProtKB:O43633\|UniProtKB:Q7LBR1\|UniProtKB:Q96CF2\|UniProtKB:Q9BY43\|UniProtKB:Q9HD42	9068941	PMID:14505570	UniProt	PMID:14505570
Vps4a	Squirrel	protein binding	enables	ISO	UniProtKB:P53843\|UniProtKB:P53990	9068941	PMID:19129480	UniProt	PMID:19129480
Vps4a	Squirrel	protein binding	enables	ISO	UniProtKB:O43633\|UniProtKB:Q7LBR1\|UniProtKB:Q96FZ7\|UniProtKB:Q9H444\|UniProtKB:Q9Y3E7	9068941	PMID:21543490	UniProt	PMID:21543490
Vps4a	Squirrel	protein binding	enables	ISO	UniProtKB:Q7LBR1	9068941	PMID:16174732, PMID:18997780	UniProt	PMID:16174732\|PMID:18997780
Vps4a	Squirrel	protein binding	enables	ISO	UniProtKB:Q7LBR1\|UniProtKB:Q9HD42-1	9068941	PMID:17928862	IntAct	PMID:17928862
Vps4a	Squirrel	protein binding	enables	ISO	UniProtKB:P53990	9068941	PMID:19129479	UniProt	PMID:19129479
Vps4a	Squirrel	protein binding	enables	ISO	UniProtKB:O43633\|UniProtKB:Q7LBR1\|UniProtKB:Q9HD42	9068941	PMID:14519844, PMID:16730941	UniProt	PMID:14519844\|PMID:16730941
Vps4a	Squirrel	protein binding	enables	ISO	UniProtKB:O43633\|UniProtKB:Q7LBR1\|UniProtKB:Q9HD42\|UniProtKB:Q9UQN3	9068941	PMID:17928862	UniProt	PMID:17928862
Vps4a	Squirrel	protein binding	enables	ISO	UniProtKB:Q96FZ7	9068941	PMID:18606141	UniProt	PMID:18606141
Vps4a	Squirrel	protein binding	enables	ISO	UniProtKB:Q9NP79	9068941	PMID:18385515, PMID:23105106	UniProt	PMID:18385515\|PMID:23105106
Vps4a	Squirrel	protein binding	enables	ISO	UniProtKB:O43633\|UniProtKB:Q9HD42	9068941	PMID:35271311	IntAct	PMID:35271311
Vps4a	Squirrel	protein binding	enables	ISO	UniProtKB:Q9HD42	9068941	PMID:11559748, PMID:33961781	UniProt	PMID:11559748\|PMID:33961781
Vps4a	Squirrel	protein binding	enables	ISO	UniProtKB:Q96K21-1	9068941	PMID:24814515	IntAct	PMID:24814515
Vps4a	Squirrel	protein binding	enables	ISO	UniProtKB:Q96K21	9068941	PMID:24814515	UniProt	PMID:24814515
Vps4a	Squirrel	protein binding	enables	ISO	UniProtKB:O95833	9068941	PMID:32296183	IntAct	PMID:32296183
Vps4a	Squirrel	protein-containing complex binding	enables	IEA	UniProtKB:Q9UN37\|ensembl:ENSP00000254950	150520179		Ensembl	GO_REF:0000107
Vps4a	Squirrel	small GTPase binding		ISO	RGD:1306172	9068941		RGD	PMID:11931639\|REF_RGD_ID:2290289

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Vps4a	Squirrel	autophagy pathway		ISO	RGD:732193	9068941		RGD	PMID:19535733\|REF_RGD_ID:4892619

PMID:22301074	PMID:30032202

Vps4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	40,144,891 - 40,156,804 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	19,432,229 - 19,444,223 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	19,432,311 - 19,444,223 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VPS4A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	69,311,350 - 69,326,939 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	69,311,336 - 69,326,939 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	69,345,253 - 69,360,842 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	67,902,788 - 67,916,447 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	67,902,787 - 67,916,446	NCBI
Celera	16	53,859,828 - 53,873,486 (+)	NCBI		Celera
Cytogenetic Map	16	q22.1	NCBI
HuRef	16	55,223,517 - 55,237,174 (+)	NCBI		HuRef
CHM1_1	16	70,753,291 - 70,766,948 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	75,113,104 - 75,128,634 (+)	NCBI		T2T-CHM13v2.0

Vps4a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	107,757,901 - 107,772,392 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	107,757,854 - 107,772,387 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	107,031,269 - 107,045,760 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	107,031,222 - 107,045,755 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	109,555,226 - 109,569,656 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	109,920,455 - 109,934,885 (+)	NCBI		MGSCv36	mm8
Celera	8	111,257,885 - 111,272,306 (+)	NCBI		Celera
Cytogenetic Map	8	D3	NCBI
cM Map	8	53.53	NCBI

Vps4a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	51,838,411 - 51,858,639 (+)	NCBI		GRCr8
mRatBN7.2	19	34,934,999 - 34,948,888 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	34,934,961 - 34,948,887 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	41,750,699 - 41,763,746 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	42,404,046 - 42,417,093 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	44,703,279 - 44,716,379 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	39,230,050 - 39,243,298 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	39,229,754 - 39,243,496 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	50,093,663 - 50,106,670 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	36,887,345 - 36,900,864 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	36,892,225 - 36,905,745 (+)	NCBI
Celera	19	34,358,772 - 34,371,812 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

Vps4a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955484	7,368,938 - 7,375,969 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955484	7,368,938 - 7,375,964 (-)	NCBI	ChiLan1.0	ChiLan1.0

VPS4A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	78,845,740 - 78,869,672 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	84,767,388 - 84,781,302 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	49,685,827 - 49,699,542 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	68,946,466 - 69,085,714 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	69,074,091 - 69,085,714 (+)	Ensembl	panpan1.1		panPan2

VPS4A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	80,327,059 - 80,340,380 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	80,311,739 - 80,330,670 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	80,755,360 - 80,774,301 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	80,759,718 - 80,774,322 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	80,582,504 - 80,601,442 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	80,265,344 - 80,284,280 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	80,904,921 - 80,923,853 (-)	NCBI		UU_Cfam_GSD_1.0

VPS4A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	17,654,638 - 17,669,841 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	17,657,792 - 17,669,560 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	16,604,522 - 16,616,293 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VPS4A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	58,081,800 - 58,095,115 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	58,082,521 - 58,095,173 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	20,811,652 - 20,825,117 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vps4a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	17,047,519 - 17,054,738 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	17,044,173 - 17,059,295 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005318365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013366034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021721696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005731210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000012853 ⟹ ENSSTOP00000011518

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936475	19,432,229 - 19,444,223 (+)	Ensembl

RefSeq Acc Id:

XM_005318365 ⟹ XP_005318422

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	40,144,891 - 40,156,801 (-)	NCBI
SpeTri2.0	NW_004936475	19,432,311 - 19,444,223 (+)	NCBI

Sequence:

show sequence

CTCGCTAGCCCTCAGACTAGGCTCCTGCTGAGAGCGACCGCCCTCCCTGCGCCCAGCGCCGACCCGCCCGGCTCCCCGCGCCGGACCCAGCACCTCGGCTCCCCGGGGTCGGACCGAGGTCGCAAGCA
GCGCCGCGGGGTGTGGGGCGGACCCAGGAGATGAAATGACAACGTCAACCCTCCAGAAAGCCATTGATCTGGTGACAAAAGCCACAGAAGAGGATAAAGCCAAGAACTACGAGGAGGCACTCCGGCTC
TACCAGCATGCTGTGGAGTACTTCCTCCACGCTATCAAGTATGAGGCACACAGTGACAAAGCCAAGGAGAGCATTCGAGCCAAGTGCGTGCAGTACCTAGACCGGGCAGAGAAGCTGAAGGATTATTT
ACGAAACAAAGAGAAACACGGCAAGAAGCCAGTCAAAGAGAATCAAAGTGAGGGCAAGGGCAGTGATAGTGACAGTGAAGGGGATAATCCAGAGAAAAAGAAATTGCAAGAACAACTGATGGGTGCTG
TTGTGATGGAGAAACCCAACATACGATGGAATGACGTGGCTGGGCTGGAGGGGGCCAAGGAGGCTCTCAAAGAAGCTGTCATTTTGCCAATTAAATTCCCACACTTGTTCACAGGCAAGCGTACCCCT
TGGCGAGGGATACTGCTTTTTGGACCCCCTGGCACAGGGAAATCCTATCTGGCCAAGGCTGTGGCAACAGAGGCCAACAACTCTACCTTCTTCTCTGTGTCCTCCTCAGATTTGATGTCTAAGTGGTT
GGGGGAGAGTGAGAAGCTAGTCAAGAATCTCTTTGAGCTAGCCAGGCAACACAAGCCCTCCATCATCTTCATCGATGAGGTGGATTCTCTCTGTGGGTCCCGGAATGAAAATGAGAGCGAGGCTGCCC
GAAGGATCAAAACAGAGTTCTTGGTCCAAATGCAGGGGGTGGGGAATAACAATGATGGGACTCTGGTTCTCGGTGCCACAAACATCCCCTGGGTGTTGGATTCAGCTATTAGAAGGAGGTTTGAAAAG
CGCATTTATATCCCACTGCCAGAAGAAGCTGCCCGTGCCCAGATGTTCCGATTGCATCTTGGGAGCACTCCACACAACCTCACAGATGCCAACATCCATGAGCTGGCCCGGAAGACAGAAGGCTACTC
AGGTGCAGACATCAGCATCATTGTGAGGGACTCCCTTATGCAGCCTGTCAGGAAAGTGCAGTCAGCAACACACTTCAAGAAGGTCTGTGGTCCTTCCCGCACCAACCCTAGCATTGTGATTGATGACC
TCCTGACCCCATGCTCTCCAGGGGACCCAGGGGCCATAGAGATGACTTGGATGGAGGTTCCTAGTGACAAACTCTTAGAGCCTGTGGTTTCCATGTCGGACATGCTCCGGTCTTTGGCCACCACCCGG
CCCACAGTGAATGCAGATGACCTCCTGAAAGTGAAGAAATTCTCAGAGGACTTTGGACAGGAGAGTTAAAAGCTTCTTCACATGGGTGAAGGTGAAGGTGGGAGGTTGATTGGGGCACATCTACGGTA
CTCCCTACACTGGTGGCCAGACAGGGCTCCAGGGCTCGTCCTAAAGTCACCACAGTGTCTCCTCTGCTGTCTGGCCGCCAGCCAGGGAGCAGGAAGAAAAAGGCCTCCACAGCAGATGACGCTCCGCT
GCGGTCTGGCACACAGTGGATACTGGTTCTTCCTAGTTCTCTCTTCTGGATGCTGACCAGTTCCTTTTCCTGACCCTCCATGTCTTCTTTATTTTTGTTTCCCTAAATTAATGCTGCTTTGATTTGTC
TTGTTTATAAAGGTAAAATCCCCTGGAAGTGTCAAGGAGTGGGAGTAGCCAGGCCCCAGTTACTTTTATGGCCAAGTTTGGCTGAGAACAGACTGATGAAGAGTAAGAAAAGCCATTCCCACCCTCCT
AGGTTTGCATCCAGAGCCCTGTGTCTTCCTTGCAAGAGGAGGAGATGGTTTCTGTGAGCACAAAGCTGTTTTGATCAGGAGAGAAGGCAGGTGCATCTTCACTGCTGCCTCCCCACCCCCCCAGCCCC
ACCCTCCTGAGTGTAAGAACACTGAACCCAGCCACTGCCCTGGGTCCCTGTCCTGGAGATGGTCTAATAAATCCTTTTCCCTTCTTGA

hide sequence

RefSeq Acc Id:

XM_021721696 ⟹ XP_021577371

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	40,144,891 - 40,156,802 (-)	NCBI
SpeTri2.0	NW_004936475	19,432,311 - 19,444,223 (+)	NCBI

Sequence:

show sequence

CTCGCTAGCCCTCAGACTAGGCTCCTGCTGAGAGCGACCGCCCTCCCTGCGCCCAGCGCCGACCCGCCCGGCTCCCCGCGCCGGACCCAGCACCTCGGCTCCCCGGGGTCGGACCGAGGTCGCAAGCA
GCGCCGCGGGGTGTGGGGCGGACCCAGGAGATGAAATGACAACGTCAACCCTCCAGAAAGCCATTGATCTGGTGACAAAAGCCACAGAAGAGGATAAAGCCAAGAACTACGAGGAGGCACTCCGGCTC
TACCAGCATGCTGTGGAGTACTTCCTCCACGCTATCAAGTATGAGGCACACAGTGACAAAGCCAAGGAGAGCATTCGAGCCAAGTGCGTGCAGTACCTAGACCGGGCAGAGAAGCTGAAGGATTATTT
ACGAAACAAAGAGAAACACGGCAAGAAGCCAGTCAAAGAGAATCAAAGTGAGGGCAAGGGTGATAGTGACAGTGAAGGGGATAATCCAGAGAAAAAGAAATTGCAAGAACAACTGATGGGTGCTGTTG
TGATGGAGAAACCCAACATACGATGGAATGACGTGGCTGGGCTGGAGGGGGCCAAGGAGGCTCTCAAAGAAGCTGTCATTTTGCCAATTAAATTCCCACACTTGTTCACAGGCAAGCGTACCCCTTGG
CGAGGGATACTGCTTTTTGGACCCCCTGGCACAGGGAAATCCTATCTGGCCAAGGCTGTGGCAACAGAGGCCAACAACTCTACCTTCTTCTCTGTGTCCTCCTCAGATTTGATGTCTAAGTGGTTGGG
GGAGAGTGAGAAGCTAGTCAAGAATCTCTTTGAGCTAGCCAGGCAACACAAGCCCTCCATCATCTTCATCGATGAGGTGGATTCTCTCTGTGGGTCCCGGAATGAAAATGAGAGCGAGGCTGCCCGAA
GGATCAAAACAGAGTTCTTGGTCCAAATGCAGGGGGTGGGGAATAACAATGATGGGACTCTGGTTCTCGGTGCCACAAACATCCCCTGGGTGTTGGATTCAGCTATTAGAAGGAGGTTTGAAAAGCGC
ATTTATATCCCACTGCCAGAAGAAGCTGCCCGTGCCCAGATGTTCCGATTGCATCTTGGGAGCACTCCACACAACCTCACAGATGCCAACATCCATGAGCTGGCCCGGAAGACAGAAGGCTACTCAGG
TGCAGACATCAGCATCATTGTGAGGGACTCCCTTATGCAGCCTGTCAGGAAAGTGCAGTCAGCAACACACTTCAAGAAGGTCTGTGGTCCTTCCCGCACCAACCCTAGCATTGTGATTGATGACCTCC
TGACCCCATGCTCTCCAGGGGACCCAGGGGCCATAGAGATGACTTGGATGGAGGTTCCTAGTGACAAACTCTTAGAGCCTGTGGTTTCCATGTCGGACATGCTCCGGTCTTTGGCCACCACCCGGCCC
ACAGTGAATGCAGATGACCTCCTGAAAGTGAAGAAATTCTCAGAGGACTTTGGACAGGAGAGTTAAAAGCTTCTTCACATGGGTGAAGGTGAAGGTGGGAGGTTGATTGGGGCACATCTACGGTACTC
CCTACACTGGTGGCCAGACAGGGCTCCAGGGCTCGTCCTAAAGTCACCACAGTGTCTCCTCTGCTGTCTGGCCGCCAGCCAGGGAGCAGGAAGAAAAAGGCCTCCACAGCAGATGACGCTCCGCTGCG
GTCTGGCACACAGTGGATACTGGTTCTTCCTAGTTCTCTCTTCTGGATGCTGACCAGTTCCTTTTCCTGACCCTCCATGTCTTCTTTATTTTTGTTTCCCTAAATTAATGCTGCTTTGATTTGTCTTG
TTTATAAAGGTAAAATCCCCTGGAAGTGTCAAGGAGTGGGAGTAGCCAGGCCCCAGTTACTTTTATGGCCAAGTTTGGCTGAGAACAGACTGATGAAGAGTAAGAAAAGCCATTCCCACCCTCCTAGG
TTTGCATCCAGAGCCCTGTGTCTTCCTTGCAAGAGGAGGAGATGGTTTCTGTGAGCACAAAGCTGTTTTGATCAGGAGAGAAGGCAGGTGCATCTTCACTGCTGCCTCCCCACCCCCCCAGCCCCACC
CTCCTGAGTGTAAGAACACTGAACCCAGCCACTGCCCTGGGTCCCTGTCCTGGAGATGGTCTAATAAATCCTTTTCCCTTCTTGA

hide sequence

RefSeq Acc Id:

XR_005731210

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	40,144,891 - 40,156,804 (-)	NCBI


Protein RefSeqs	XP_005318422	(Get FASTA)	NCBI Sequence Viewer
	XP_021577371	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000011518.2
GenBank Protein	KAG3256958	(Get FASTA)	NCBI Sequence Viewer
	KAG3256959	(Get FASTA)	NCBI Sequence Viewer
	KAG3256960	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005318422 ⟸ XM_005318365
- Peptide Label:	isoform X1
- UniProtKB:	I3MJX2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQYLDRAEKLKDYLRNKEKHGKKPVKENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWND VAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQ GVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSIVIDDLLTPCSPGDPGA IEMTWMEVPSDKLLEPVVSMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQES hide sequence

RefSeq Acc Id:

XP_021577371 ⟸ XM_021721696

- Peptide Label:

isoform X2

- Sequence:

show sequence

MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQYL
DRAEKLKDYLRNKEKHGKKPVKENQSEGKGDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVS
SSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHE
LARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSIVIDDLLTPCSPGDPGAIEMTWMEVPSDKLLEPVVSMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQES

hide sequence

Ensembl Acc Id:

ENSSTOP00000011518 ⟸ ENSSTOT00000012853

Protein Domains

AAA+ ATPase MIT

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000012857	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000012853.3	UniProtKB/TrEMBL
Gene3D-CATH	1.10.8.60	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
	Phosphotransferase system, lactose/cellobiose-type IIA subunit	UniProtKB/TrEMBL
InterPro	AAA+_ATPase	UniProtKB/TrEMBL
	AAA_lid_3	UniProtKB/TrEMBL
	ATPase_AAA_core	UniProtKB/TrEMBL
	ATPase_AAA_CS	UniProtKB/TrEMBL
	MIT_dom	UniProtKB/TrEMBL
	MIT_dom_sf	UniProtKB/TrEMBL
	MT-severing_AAA_ATPase	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	Vps4_C	UniProtKB/TrEMBL
	VPS4_MIT	UniProtKB/TrEMBL
NCBI Gene	Vps4a	ENTREZGENE
PANTHER	AAA DOMAIN-CONTAINING	UniProtKB/TrEMBL
	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 4A	UniProtKB/TrEMBL
Pfam	AAA	UniProtKB/TrEMBL
	AAA_lid_3	UniProtKB/TrEMBL
	MIT	UniProtKB/TrEMBL
	Vps4_C	UniProtKB/TrEMBL
PROSITE	AAA	UniProtKB/TrEMBL
SMART	AAA	UniProtKB/TrEMBL
	MIT	UniProtKB/TrEMBL
Superfamily-SCOP	SSF116846	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
UniProt	I3MJX2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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