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ONTOLOGY REPORT - ANNOTATIONS

Term:photoreceptor connecting cilium
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Accession:GO:0032391 term browser browse the term
Definition:The portion of the photoreceptor cell cilium linking the photoreceptor inner and outer segments. It's considered to be equivalent to the ciliary transition zone.
Synonyms:related_synonym: photoreceptor cilium

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photoreceptor connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 located_in ISO (PMID:17906286) MGI PMID:17906286 NCBI chrNW_004936469:8,653,031...9,209,840 JBrowse link
G Alpk1 alpha kinase 1 located_in ISO (PMID:30967659) UniProt PMID:30967659 NCBI chrNW_004936563:3,233,913...3,296,671
Ensembl chrNW_004936563:3,235,181...3,296,257 		JBrowse link
G Arl3 ARF like GTPase 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936600:3,190,212...3,229,831
Ensembl chrNW_004936600:3,190,208...3,232,755 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:31,962,500...32,019,516
Ensembl chrNW_004936471:31,962,336...32,020,712 		JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (PMID:16632484), (PMID:16682973), (PMID:23943788) MGI PMID:16632484 PMID:16682973 PMID:23943788 NCBI chrNW_004936507:5,223,756...5,305,392
Ensembl chrNW_004936507:5,221,910...5,305,422 		JBrowse link
G Cetn1 centrin 1 located_in ISO (PMID:15347651), (PMID:30120214) UniProt PMID:15347651 PMID:30120214 NCBI chrNW_004936550:102,360...103,032 JBrowse link
G Cetn2 centrin 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936714:274,098...279,177
Ensembl chrNW_004936714:274,036...279,381 		JBrowse link
G Cetn3 centrin 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:8,501,572...8,516,722
Ensembl chrNW_004936469:8,501,552...8,516,927 		JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:82,702...90,525
Ensembl chrNW_004936500:82,716...90,523 		JBrowse link
G Fam161a FAM161 centrosomal protein A located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936491:7,202,877...7,221,493
Ensembl chrNW_004936491:7,212,194...7,221,618 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:1,735,258...1,740,297
Ensembl chrNW_004936529:1,735,440...1,742,567 		JBrowse link
G Ift122 intraflagellar transport 122 located_in ISO (PMID:19208653) UniProt PMID:19208653 NCBI chrNW_004936602:908,034...956,634
Ensembl chrNW_004936602:905,486...956,521 		JBrowse link
G Ift140 intraflagellar transport 140 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:2,344,448...2,419,396
Ensembl chrNW_004936694:2,344,283...2,423,520 		JBrowse link
G Ift20 intraflagellar transport 20 located_in ISO (PMID:31637240)
(PMID:21307337)		 UniProt
MGI		 PMID:21307337 PMID:31637240 NCBI chrNW_004936538:4,484,484...4,491,688 JBrowse link
G Ift52 intraflagellar transport 52 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:2,965,587...3,003,758
Ensembl chrNW_004936530:2,967,533...3,003,980 		JBrowse link
G Ift57 intraflagellar transport 57 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936645:1,471,393...1,524,193
Ensembl chrNW_004936645:1,468,375...1,524,238 		JBrowse link
G Ift88 intraflagellar transport 88 located_in ISO (PMID:19208653), (PMID:20368623) MGI PMID:19208653 PMID:20368623 NCBI chrNW_004936720:1,041,216...1,168,725
Ensembl chrNW_004936720:1,041,211...1,168,748 		JBrowse link
G Iqcb1 IQ motif containing B1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936536:8,164,120...8,213,690
Ensembl chrNW_004936536:8,163,554...8,213,708 		JBrowse link
G Kiaa1549 KIAA1549 ortholog located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936592:3,132,166...3,215,835
Ensembl chrNW_004936592:3,132,703...3,275,199 		JBrowse link
G Kif17 kinesin family member 17 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:6,598,641...6,642,491
Ensembl chrNW_004936474:6,600,209...6,642,496 		JBrowse link
G Kif3a kinesin family member 3A located_in ISO (PMID:19208653) UniProt PMID:19208653 NCBI chrNW_004936647:2,461,017...2,502,550
Ensembl chrNW_004936647:2,461,138...2,501,871 		JBrowse link
G Kifap3 kinesin associated protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:16,664,025...16,777,440
Ensembl chrNW_004936481:16,663,974...16,779,428 		JBrowse link
G Lca5 lebercilin LCA5 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936510:10,652,378...10,702,761
Ensembl chrNW_004936510:10,671,297...10,703,618 		JBrowse link
G LOC101978287 protocadherin beta-15 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:12,871,992...12,887,960 JBrowse link
G Mak male germ cell associated kinase located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:2,170,853...2,239,647
Ensembl chrNW_004936534:2,170,794...2,224,065 		JBrowse link
G Myo7a myosin VIIA located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:5,758,572...5,824,526
Ensembl chrNW_004936498:5,751,779...5,824,378 		JBrowse link
G Nphp4 nephrocystin 4 located_in ISO (PMID:21078623) MGI PMID:21078623 NCBI chrNW_004936623:802,152...904,198 JBrowse link
G PCDHB13 protocadherin beta 13 located_in IEA Ensembl GO_REF:0000107 Ensembl chrNW_004936504:12,929,876...12,932,278 JBrowse link
G Poc5 POC5 centriolar protein located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936549:1,065,495...1,111,642
Ensembl chrNW_004936549:1,065,475...1,114,496 		JBrowse link
G Rp1 RP1 axonemal microtubule associated located_in ISO (PMID:11773008), (PMID:14507858)
(PMID:11767049)		 UniProt
MGI		 PMID:11767049 PMID:11773008 PMID:14507858 NCBI chrNW_004936496:1,524,123...1,583,114 JBrowse link
G Rp1l1 RP1 like 1 located_in ISO (PMID:19657028) UniProt PMID:19657028 NCBI chrNW_004936675:2,527,406...2,564,464 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:10725384) MGI PMID:10725384 NCBI chrNW_004936502:5,163,164...5,212,940 JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936880:440,900...511,503
Ensembl chrNW_004936880:440,737...512,685 		JBrowse link
G Rpgrip1l RPGRIP1 like located_in ISO
IEA		 RGD
TreeGrafter		 PMID:17558407 GO_REF:0000118 RGD:11537356 NCBI chrNW_004936475:6,219,187...6,321,612
Ensembl chrNW_004936475:6,215,475...6,321,618 		JBrowse link
G Septin2 septin 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936745:518,650...555,187
Ensembl chrNW_004936745:518,391...546,953 		JBrowse link
G Spata7 spermatogenesis associated 7 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:15,878,167...15,911,301
Ensembl chrNW_004936488:15,878,158...15,911,415 		JBrowse link
G Sptbn5 spectrin beta, non-erythrocytic 5 located_in ISO (PMID:23704327) MGI PMID:23704327 NCBI chrNW_004936471:5,154,294...5,195,083 JBrowse link
G Tbcc tubulin folding cofactor C located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:17,145,956...17,147,299
Ensembl chrNW_004936476:17,146,017...17,147,054 		JBrowse link
G Tmem237 transmembrane protein 237 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936726:872,368...892,185
Ensembl chrNW_004936726:869,238...891,283 		JBrowse link
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase located_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936524:1,219,101...1,229,937
Ensembl chrNW_004936524:1,219,907...1,229,723 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:16,258,247...16,306,077
Ensembl chrNW_004936488:16,258,058...16,306,589 		JBrowse link
G Ush1g USH1 protein network component sans located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:258,115...262,739
Ensembl chrNW_004936594:259,030...262,778 		JBrowse link
G Ush2a usherin located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936628:2,123,917...2,859,958
Ensembl chrNW_004936628:2,123,957...2,858,872 		JBrowse link
G Wdr19 WD repeat domain 19 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:6,863,592...6,937,810
Ensembl chrNW_004936482:6,863,571...6,937,979 		JBrowse link
G Whrn whirlin located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:3,668,465...3,748,234
Ensembl chrNW_004936487:3,669,104...3,748,238 		JBrowse link
photoreceptor distal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004936560:2,881,631...3,057,256
Ensembl chrNW_004936560:2,881,977...3,038,725 		JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004936507:5,223,756...5,305,392
Ensembl chrNW_004936507:5,221,910...5,305,422 		JBrowse link
G Nphp4 nephrocystin 4 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004936623:802,152...904,198 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004936502:5,163,164...5,212,940 JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936880:440,900...511,503
Ensembl chrNW_004936880:440,737...512,685 		JBrowse link
G Spata7 spermatogenesis associated 7 located_in
is_active_in		 IEA
ISO		 (PMID:29899041) Ensembl
TreeGrafter
MGI		 PMID:29899041 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936488:15,878,167...15,911,301
Ensembl chrNW_004936488:15,878,158...15,911,415 		JBrowse link
photoreceptor proximal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep290 centrosomal protein 290 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004936507:5,223,756...5,305,392
Ensembl chrNW_004936507:5,221,910...5,305,422 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 16781
    cellular anatomical structure 16693
      ciliary transition zone 79
        photoreceptor connecting cilium 46
          photoreceptor distal connecting cilium 6
          photoreceptor proximal connecting cilium 1
Path 2
Term Annotations click to browse term
  cellular_component 16781
    cellular anatomical structure 16693
      cell projection 2423
        plasma membrane bounded cell projection 2363
          cilium 762
            non-motile cilium 172
              9+0 non-motile cilium 129
                photoreceptor cell cilium 116
                  photoreceptor connecting cilium 46
                    photoreceptor distal connecting cilium 6
                    photoreceptor proximal connecting cilium 1
paths to the root