Sptbn5 (spectrin beta, non-erythrocytic 5) - Rat Genome Database

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Gene: Sptbn5 (spectrin beta, non-erythrocytic 5) Ictidomys tridecemlineatus
Analyze
Symbol: Sptbn5
Name: spectrin beta, non-erythrocytic 5
RGD ID: 12734987
Description: ENCODES a protein that exhibits actin filament binding (ortholog); dynactin binding (ortholog); dynein intermediate chain binding (ortholog); INVOLVED IN Golgi organization (ortholog); lysosomal transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN apical cortex (ortholog); cortical cytoskeleton (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spectrin beta chain, non-erythrocytic 5; spectrin beta, non-erythrocytic 5, transcript variant X1; spectrin beta, non-erythrocytic 5, transcript variant X10; spectrin beta, non-erythrocytic 5, transcript variant X11; spectrin beta, non-erythrocytic 5, transcript variant X2; spectrin beta, non-erythrocytic 5, transcript variant X3; spectrin beta, non-erythrocytic 5, transcript variant X4; spectrin beta, non-erythrocytic 5, transcript variant X5; spectrin beta, non-erythrocytic 5, transcript variant X6; spectrin beta, non-erythrocytic 5, transcript variant X7; spectrin beta, non-erythrocytic 5, transcript variant X8; spectrin beta, non-erythrocytic 5, transcript variant X9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864087,306,231 - 87,353,920 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364715,154,294 - 5,195,083 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sptbn5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864087,306,231 - 87,353,920 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364715,154,294 - 5,195,083 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPTBN5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381541,848,146 - 41,894,053 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1541,848,146 - 41,894,053 (-)EnsemblGRCh38hg38GRCh38
GRCh371542,140,344 - 42,186,251 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361539,927,636 - 39,973,567 (-)NCBINCBI36Build 36hg18NCBI36
Build 341539,927,636 - 39,973,567NCBI
Celera1518,907,986 - 18,953,916 (-)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1518,988,732 - 19,034,698 (-)NCBIHuRef
CHM1_11542,258,817 - 42,304,755 (-)NCBICHM1_1
T2T-CHM13v2.01539,654,101 - 39,700,011 (-)NCBIT2T-CHM13v2.0
Sptbn5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392119,871,974 - 119,919,394 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2119,871,974 - 119,916,159 (-)EnsemblGRCm39 Ensembl
GRCm382120,041,493 - 120,088,913 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2120,041,493 - 120,085,678 (-)EnsemblGRCm38mm10GRCm38
MGSCv372119,867,830 - 119,911,414 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362119,733,535 - 119,777,365 (-)NCBIMGSCv36mm8
Celera2121,199,608 - 121,243,741 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.11NCBI
Sptbn5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83127,467,137 - 127,511,814 (-)NCBIGRCr8
mRatBN7.23107,013,783 - 107,054,878 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3107,013,265 - 107,054,324 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.03111,833,411 - 111,875,551 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3111,837,698 - 111,873,974 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.03118,382,048 - 118,422,616 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,548,449 - 106,591,064 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13106,445,029 - 106,490,705 (-)NCBI
Celera3105,923,233 - 105,964,782 (-)NCBICelera
Cytogenetic Map3q35NCBI
Sptbn5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554168,643,177 - 8,684,469 (-)NCBIChiLan1.0ChiLan1.0
SPTBN5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21631,089,054 - 31,135,187 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11535,240,282 - 35,286,414 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01520,789,568 - 20,839,907 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11538,985,247 - 39,005,473 (-)NCBIpanpan1.1PanPan1.1panPan2
SPTBN5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1308,877,155 - 8,922,749 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl308,879,625 - 8,923,165 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha308,934,215 - 8,981,866 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0309,010,329 - 9,057,990 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl309,014,901 - 9,057,990 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1308,931,082 - 8,978,946 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0309,035,059 - 9,082,937 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0309,170,054 - 9,217,719 (-)NCBIUU_Cfam_GSD_1.0
SPTBN5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1129,462,568 - 129,511,568 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11129,461,598 - 129,514,380 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21144,567,390 - 144,618,735 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPTBN5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12641,090,023 - 41,137,645 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2641,091,478 - 41,135,932 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604899,864,621 - 99,915,190 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sptbn5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248049,031,945 - 9,049,601 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021725943   ⟹   XP_021581618
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864087,306,231 - 87,347,016 (-)NCBI
SpeTri2.0NW_0049364715,154,294 - 5,195,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040275644   ⟹   XP_040131578
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864087,306,231 - 87,353,920 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021581618   ⟸   XM_021725943
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040131578   ⟸   XM_040275644
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene Sptbn5 ENTREZGENE