Cetn3 (centrin 3) - Rat Genome Database

Name: Cetn3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Cetn3 (centrin 3) Ictidomys tridecemlineatus

Analyze

Symbol:

Cetn3

Name:

centrin 3

RGD ID:

12542958

Description:

ENCODES a protein that exhibits calcium ion binding (inferred); G-protein beta/gamma-subunit complex binding (inferred); metal ion binding (inferred); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN centriole (inferred); centrosome (inferred); ciliary basal body (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

centrin 3, transcript variant X1; centrin 3, transcript variant X2; centrin-3

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CETN3 (centrin 3)	NCBI	Ortholog
Mus musculus (house mouse):	Cetn3 (centrin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cetn3 (centrin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cetn3 (centrin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CETN3 (centrin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CETN3 (centrin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CETN3 (centrin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CETN3 (centrin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cetn3 (centrin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	174,109,017 - 174,124,187 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	8,501,552 - 8,516,927 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	8,501,572 - 8,516,722 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial adenomatous polyposis 1 (ISO)

genetic disease (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

centriole (IEA)

centrosome (IEA)

ciliary basal body (IEA)

ciliary transition zone (IEA)

nuclear pore nuclear basket (IEA)

photoreceptor connecting cilium (IEA)

transcription export complex 2 (IEA)

Molecular Function

calcium ion binding (IEA)

G-protein beta/gamma-subunit complex binding (IEA)

metal ion binding (IEA)

microtubule binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Cetn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	174,109,017 - 174,124,187 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	8,501,552 - 8,516,927 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	8,501,572 - 8,516,722 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CETN3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	90,392,257 - 90,409,756 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	90,392,257 - 90,409,766 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	89,688,074 - 89,705,573 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	89,725,284 - 89,741,359 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	89,725,286 - 89,741,359	NCBI
Celera	5	85,591,376 - 85,607,451 (-)	NCBI		Celera
Cytogenetic Map	5	q14.3	NCBI
HuRef	5	84,900,167 - 84,916,242 (-)	NCBI		HuRef
CHM1_1	5	89,122,207 - 89,138,285 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	90,878,812 - 90,896,306 (-)	NCBI		T2T-CHM13v2.0

Cetn3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	81,928,201 - 81,945,274 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	81,931,196 - 81,945,274 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	81,780,636 - 81,797,155 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	81,783,077 - 81,797,155 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	81,922,291 - 81,936,156 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	82,260,629 - 82,274,494 (+)	NCBI		MGSCv36	mm8
Celera	13	84,040,605 - 84,054,471 (+)	NCBI		Celera
Cytogenetic Map	13	C3	NCBI
cM Map	13	43.68	NCBI

Cetn3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	13,817,760 - 13,837,502 (+)	NCBI		GRCr8
mRatBN7.2	2	12,089,025 - 12,101,828 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	12,089,226 - 12,101,828 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	19,202,033 - 19,214,399 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	17,301,555 - 17,313,921 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	11,958,922 - 11,971,333 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	12,101,473 - 12,115,009 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	12,102,487 - 12,115,009 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	2	9,683,570 - 9,696,050 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	11,965,387 - 11,977,798 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	9,909,950 - 9,922,361 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	9,835,782 - 9,846,214 (+)	NCBI
Celera	2	8,442,073 - 8,454,484 (+)	NCBI		Celera
Cytogenetic Map	2	q11	NCBI

Cetn3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	21,206,387 - 21,222,456 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955418	21,206,387 - 21,220,984 (+)	NCBI	ChiLan1.0	ChiLan1.0

CETN3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	24,989,521 - 25,005,413 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	23,143,141 - 23,159,033 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	24,965,172 - 24,981,259 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	25,098,973 - 25,114,676 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	25,098,973 - 25,114,676 (+)	Ensembl	panpan1.1		panPan2

CETN3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	18,529,198 - 18,547,195 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	18,529,240 - 18,547,069 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	19,896,446 - 19,915,446 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	18,433,800 - 18,452,784 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	18,433,834 - 18,453,058 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	18,408,918 - 18,427,898 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	18,374,708 - 18,393,706 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	18,663,156 - 18,682,119 (+)	NCBI		UU_Cfam_GSD_1.0

CETN3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	97,572,449 - 97,593,291 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	97,574,003 - 97,593,320 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	100,651,981 - 100,671,290 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CETN3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	84,334,503 - 84,350,269 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	84,334,533 - 84,350,276 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666049	33,392,231 - 33,407,996 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cetn3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624743	9,661,857 - 9,677,599 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624743	9,663,281 - 9,677,626 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005315678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000012268 ⟹ ENSSTOP00000010996

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936469	8,501,552 - 8,516,927 (-)	Ensembl

RefSeq Acc Id:

XM_005315678 ⟹ XP_005315735

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	174,109,017 - 174,124,187 (+)	NCBI
SpeTri2.0	NW_004936469	8,501,572 - 8,516,722 (-)	NCBI

Sequence:

show sequence

TCCAGCCGGTCCTAGAGGCCGCTGAGGTCGTTCGAGTCTGTTGAACGGCTTGTGGAAGTCGTGC
TGCGTTGGGTAGGGGTTTAAAATCGTTCTTGAGAGGAACATCTCTGTCCGAAGAGAAAATGAGT
TTAGCTCTGAGAAGTGAACTTGTAGTTGACAAAACAAAGAGAAAAAAAAGAAGAGAACTTTCTG
AGGAACAGAAGCAAGAAATTAAAGATGCTTTTGAGCTATTTGATACAGACAAAGATGAAGCAAT
AGATTATCATGAATTAAAGGTGGCAATGAGAGCCTTGGGGTTTGATGTAAAAAAAGCTGATGTA
CTGAAGATTCTTAAAGATTATGACCGAGAAGCCACAGGGAAAATCACCTTTGAAGATTTTAATG
AAGTTGTGACAGACTGGATATTGGAAAGAGACCCACATGAAGAAATACTGAAGGCATTTAAACT
ATTTGATGATGATGATTCAGGTAAAATAAGCTTGAGGAATTTGCGACGAGTTGCAAGAGAATTG
GGTGAAAATATGAGTGATGAAGAACTTCGGGCTATGATAGAAGAGTTTGATAAAGATGGTGATG
GAGAAATAAATCAAGAGGAGTTCATTGCTATCATGACTGGTGATATTTAAAGAATTACAAGGAT
AAAAACACTAAGAATGTTGAAGTTACCATATTACATTCTATTTTTTTTTTGTGCCTGGAGTAAT
GTTAAAAAAGAAACCTACTTAAGTTCTTATTCTCAGAAGGACCAACATTAAGCATCTTCTGTAT
TTATGTTTTATTGTTAACTTTCTTTGTATGAGCATTGTTTAACTTTGTATTCATAATATAGGTT
TCTATAAAATTTTTAAAAAATCAAATCGTGGTACATATTCTTTGCAGATTTTTTTAATTTAACA
TTAGTCATTTCTTTTGGTGTACACTTTTTTTAGACTTTCATTAATAAATGTTTATTT

hide sequence

RefSeq Acc Id:

XM_021726618 ⟹ XP_021582293

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	174,109,017 - 174,124,096 (+)	NCBI
SpeTri2.0	NW_004936469	8,501,579 - 8,516,722 (-)	NCBI

Sequence:

show sequence

TCCAGCCGGTCCTAGAGGCCGCTGAGGTCGTTCGAGTCTGTTGAACGGCTTGTGGAAGTCGTGC
TGCGTTGGGTAGGGGTTTAAAATCGTTCTTGAGAGGAACATCTCTGTCCGAAGAGAAAATGAGT
TTAGCTCTGAGAAGTGAACTTGTAGTTGACAAAACAAAGAGAAAAAAAAGAAGAGAACTTTCTG
AGGAACAGAAGCAAGAAATTAAAGATGCTTTTGAGCTATTTGATACAGACAAAGATGAAGCAAT
AGATTATCATGAATTAAAGGTGGCAATGAGAGCCTTGGGGTTTGATGTAAAAAAAGCTGATGTA
CTGAAGATTCTTAAAGATTATGACCGAGAAGCCACAGGGAAAATCACCTTTGAAGATTTTAATG
AAGTTGTGACAGACTGGATATTGGAAAGAGACCCACATGAAGAAATACTGAAGGCATTTAAACT
ATTTGATGATGATGATTCAGGTAAAATAAGCTTGAGGAATTTGCGACGAGTTGCAAGAGAATTG
GGTGAAAATATGAGTGATGAAGAACTTCGGGCTATGATAGAAGAGTTTGATAAAGATGGTGATG
GAGAAAATGAAGAAAATGAGATGAGGAACTATTCTTGGCAGAGGTATAACTAGAAGTAAATCAA
GAGGAGTTCATTGCTATCATGACTGGTGATATTTAAAGAATTACAAGGATAAAAACACTAAGAA
TGTTGAAGTTACCATATTACATTCTATTTTTTTTTTGTGCCTGGAGTAATGTTAAAAAAGAAAC
CTACTTAAGTTCTTATTCTCAGAAGGACCAACATTAAGCATCTTCTGTATTTATGTTTTATTGT
TAACTTTCTTTGTATGAGCATTGTTTAACTTTGTATTCATAATATAGGTTTCTATAAAATTTTT
AAAAAATCAAATCGTGGTACATATTCTTTGCAGATTTTTTTAATTTAACATTAGTCATTTCTTT
TGGTGTACACTTTTTTTAGACTTTCATTAATAAATG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005315735	(Get FASTA)	NCBI Sequence Viewer
	XP_021582293	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000010996.3
GenBank Protein	KAG3266374	(Get FASTA)	NCBI Sequence Viewer
	KAG3266375	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005315735 ⟸ XM_005315678
- Peptide Label:	isoform X2
- UniProtKB:	I3MIU9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLALRSELVVDKTKRKKRRELSEEQKQEIKDAFELFDTDKDEAIDYHELKVAMRALGFDVKKA DVLKILKDYDREATGKITFEDFNEVVTDWILERDPHEEILKAFKLFDDDDSGKISLRNLRRVAR ELGENMSDEELRAMIEEFDKDGDGEINQEEFIAIMTGDI hide sequence

RefSeq Acc Id:	XP_021582293 ⟸ XM_021726618
- Peptide Label:	isoform X1
- Sequence:	show sequence MSLALRSELVVDKTKRKKRRELSEEQKQEIKDAFELFDTDKDEAIDYHELKVAMRALGFDVKKA DVLKILKDYDREATGKITFEDFNEVVTDWILERDPHEEILKAFKLFDDDDSGKISLRNLRRVAR ELGENMSDEELRAMIEEFDKDGDGENEENEMRNYSWQRYN hide sequence

RefSeq Acc Id:

ENSSTOP00000010996 ⟸ ENSSTOT00000012268

Protein Domains

EF-hand

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000012271	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000012268.3	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
NCBI Gene	Cetn3	ENTREZGENE
PANTHER	CALCIUM BINDING PROTEIN	UniProtKB/TrEMBL
	CENTRIN-3	UniProtKB/TrEMBL
Pfam	EF-hand_7	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
SMART	EFh	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/TrEMBL
UniProt	I3MIU9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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