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ONTOLOGY REPORT - ANNOTATIONS


Term:ciliary transition zone
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Accession:GO:0035869 term browser browse the term
Definition:A region of the cilium between the basal body and proximal segment that is characterized by Y-shaped assemblages that connect axonemal microtubules to the ciliary membrane. The ciliary transition zone appears to function as a gate that controls ciliary membrane composition and separates the cytosol from the ciliary plasm.
Comment:Depending on the species, this region may have a distinct geometrically shaped electron-dense structure within the axonemal lumen visible in electron microscopy images; most animals don't display this inner structure. The axoneme extends through the ciliary transition zone, but only consists of the outer doublets. The central pair, axonemal spokes, and dynein complexes are not found in this part of the ciliary shaft. Note that the connecting cilium of the photoreceptor cells is thought to be equivalent to the transition zone.
Synonyms:exact_synonym: cilial transition zone;   cilium transition zone
 related_synonym: connecting cilium



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ciliary transition zone term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07072054.1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Arl3 ADP ribosylation factor like GTPase 3 located_in ISO (MGI:5925653|PMID:26455799) RGD PMID:26455799 MGI:5925653 NCBI chr 1:245,400,659...245,446,673
Ensembl chr 1:245,400,550...245,446,820
JBrowse link
G B9d1 B9 domain containing 1 located_in ISS
ISO
GO_REF:0000024
(MGI:5300833|PMID:22179047)
UniProt
RGD
PMID:22179047 GO_REF:0000024 MGI:5300833 NCBI chr10:46,186,222...46,196,309
Ensembl chr10:46,186,691...46,196,008
JBrowse link
G B9d2 B9 domain containing 2 located_in ISO (PMID:15916950), (PMID:19208769), (PMID:21422230), (PMID:21763481) RGD PMID:15916950 PMID:19208769 PMID:21422230 PMID:21763481 NCBI chr 1:81,189,395...81,195,383
Ensembl chr 1:81,189,405...81,195,356
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in ISO (PMID:23943788) RGD PMID:23943788 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607
JBrowse link
G Bbs9 Bardet-Biedl syndrome 9 located_in ISO (PMID:23943788) RGD PMID:23943788 NCBI chr 8:21,013,865...21,437,934
Ensembl chr 8:21,013,944...21,437,930
JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A located_in
is_active_in
ISO
IBA
(MGI:5300833|PMID:22179047), (MGI:5696765|PMID:24947469)
PMID:21873635
RGD PMID:22179047 PMID:24947469 PMID:21873635 MGI:5300833 MGI:5696765, RGD:13792537 NCBI chr14:67,349,004...67,435,883
Ensembl chr14:67,351,353...67,435,949
JBrowse link
G Ccdc66 coiled-coil domain containing 66 NOT|colocalizes_with ISO (PMID:28235840) RGD PMID:28235840 NCBI chr16:2,662,125...2,694,031
Ensembl chr16:2,662,131...2,694,023
JBrowse link
G Ccsap centriole, cilia and spindle-associated protein located_in
is_active_in
ISO
IBA
(PMID:22493317)
PMID:21873635
RGD PMID:22493317 PMID:21873635 RGD:13792537 NCBI chr19:51,824,954...51,843,469
Ensembl chr19:51,826,994...51,842,753
JBrowse link
G Cdkl1 cyclin dependent kinase like 1 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 6:88,224,154...88,273,434
Ensembl chr 6:88,224,143...88,270,276
JBrowse link
G Cep131 centrosomal protein 131 located_in ISO (PMID:24415959)
(MGI:5647985|PMID:24415959)
RGD PMID:24415959 MGI:5647985 NCBI chr10:105,346,015...105,370,380
Ensembl chr10:105,346,015...105,370,380
JBrowse link
G Cep290 centrosomal protein 290 located_in
is_active_in
ISO
IBA
(PMID:23943788)
PMID:21873635
(MGI:5424301|PMID:22446187)
RGD PMID:22446187 PMID:23943788 PMID:21873635 MGI:5424301, RGD:13792537 NCBI chr 7:35,310,071...35,399,392
Ensembl chr 7:35,310,199...35,399,392
JBrowse link
G Cetn3 centrin 3 located_in ISO (MGI:5303017|PMID:22031837) RGD PMID:22031837 MGI:5303017 NCBI chr 2:12,089,025...12,101,828
Ensembl chr 2:12,089,226...12,101,828
JBrowse link
G Cfap36 cilia and flagella associated protein 36 located_in ISO (PMID:26455799) RGD PMID:26455799 NCBI chr14:102,966,006...102,991,693
Ensembl chr14:102,966,001...102,991,555
JBrowse link
G Cibar1 CBY1 interacting BAR domain containing 1 located_in
is_active_in
ISO
IBA
(MGI:6152361|PMID:29459677)
PMID:21873635
RGD PMID:29459677 PMID:21873635 PMID:21873635 MGI:6152361, RGD:13792537, RGD:13792537 NCBI chr 5:25,613,993...25,632,440
Ensembl chr 5:25,614,033...25,632,489
JBrowse link
G Cibar2 CBY1 interacting BAR domain containing 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr19:48,217,617...48,229,418
Ensembl chr19:48,215,486...48,229,404
JBrowse link
G Cplane1 ciliogenesis and planar polarity effector 1 located_in
is_active_in
ISO
IBA
(MGI:5648689|PMID:25877302)
PMID:21873635
RGD PMID:25877302 PMID:21873635 MGI:5648689, RGD:13792537 NCBI chr 2:57,269,195...57,369,580
Ensembl chr 2:57,268,884...57,369,500
JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 located_in ISS
ISO
GO_REF:0000024
(PMID:26130459)
UniProt
RGD
PMID:26130459 GO_REF:0000024 NCBI chr 6:9,992,537...10,025,403
Ensembl chr 6:9,992,541...10,025,336
JBrowse link
G Kifap3 kinesin-associated protein 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:76,127,702...76,264,654
Ensembl chr13:76,127,696...76,264,650
JBrowse link
G Macir macrophage immunometabolism regulator located_in ISO (PMID:22085962) RGD PMID:22085962 NCBI chr 9:98,420,760...98,440,818
Ensembl chr 9:98,420,376...98,441,733
JBrowse link
G Mks1 MKS transition zone complex subunit 1 located_in ISO (MGI:5288576|PMID:21725307), (MGI:5544506|PMID:24302887) RGD PMID:21725307 PMID:24302887 MGI:5288576 MGI:5544506 NCBI chr10:72,655,921...72,667,007
Ensembl chr10:72,655,921...72,666,655
JBrowse link
G Nek4 NIMA-related kinase 4 IDA RGD PMID:21685204 RGD:13204813 NCBI chr16:6,144,900...6,185,376
Ensembl chr16:6,144,959...6,188,932
JBrowse link
G Nphp1 nephrocystin 1 located_in
part_of
ISO (MGI:5544506|PMID:24302887), (MGI:5578232|PMID:20169535)
(MGI:5013991|PMID:21565611)
RGD PMID:20169535 PMID:21565611 PMID:24302887 MGI:5013991 MGI:5544506 MGI:5578232 NCBI chr 3:114,960,650...115,016,234
Ensembl chr 3:114,960,650...115,016,234
JBrowse link
G Nphp4 nephrocystin 4 located_in
is_active_in
ISO
IBA
(MGI:5578232|PMID:20169535)
PMID:21873635
RGD PMID:20169535 PMID:21873635 MGI:5578232, RGD:13792537 NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706
JBrowse link
G Pcm1 pericentriolar material 1 located_in ISO (PMID:24415959) RGD PMID:24415959 NCBI chr16:51,008,315...51,105,261
Ensembl chr16:51,008,315...51,105,091
JBrowse link
G Rpgrip1 RPGR interacting protein 1 IDA RGD PMID:21685204 RGD:13204813 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605
JBrowse link
G Rpgrip1l Rpgrip1-like is_active_in
located_in
IDA
IBA
ISO
PMID:21873635
(MGI:5449641|PMID:22927466), (MGI:6149643|PMID:29487109)
(PMID:26595381)
RGD PMID:22927466 PMID:26595381 PMID:29487109 PMID:21685204 PMID:21873635 MGI:5449641 MGI:6149643, RGD:13204813, RGD:13792537 NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083
JBrowse link
G Septin2 septin 2 located_in ISO (MGI:5544506|PMID:24302887) RGD PMID:24302887 MGI:5544506 NCBI chr 9:94,018,141...94,051,386
Ensembl chr 9:94,018,208...94,051,386
JBrowse link
G Tctn1 tectonic family member 1 located_in ISO (MGI:5288576|PMID:21725307) RGD PMID:21725307 MGI:5288576 NCBI chr12:34,309,795...34,347,190
Ensembl chr12:34,309,897...34,342,267
JBrowse link
G Tctn2 tectonic family member 2 located_in ISO (MGI:6149643|PMID:29487109) RGD PMID:29487109 MGI:6149643 NCBI chr12:31,982,440...32,007,242 JBrowse link
G Tmem107 transmembrane protein 107 located_in ISS
ISO
GO_REF:0000024
(MGI:6103051|PMID:26518474)
(PMID:26595381)
UniProt
RGD
PMID:26518474 PMID:26595381 GO_REF:0000024 MGI:6103051 NCBI chr10:53,772,153...53,774,685
Ensembl chr10:53,771,784...53,774,676
JBrowse link
G Tmem17 transmembrane protein 17 located_in
is_active_in
ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:5300833|PMID:22179047)
UniProt
RGD
PMID:22179047 PMID:21873635 GO_REF:0000024 MGI:5300833, RGD:13792537 NCBI chr14:96,483,648...96,524,238
Ensembl chr14:96,518,793...96,524,233
JBrowse link
G Tmem216 transmembrane protein 216 located_in
is_active_in
ISO
IBA
(MGI:5288576|PMID:21725307)
PMID:21873635
RGD PMID:21725307 PMID:21873635 MGI:5288576, RGD:13792537 NCBI chr 1:207,196,454...207,201,704
Ensembl chr 1:207,196,454...207,201,754
JBrowse link
G Tmem231 transmembrane protein 231 located_in
is_active_in
ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:5300833|PMID:22179047)
UniProt
RGD
PMID:22179047 PMID:21873635 GO_REF:0000024 MGI:5300833, RGD:13792537 NCBI chr19:39,883,077...39,904,296
Ensembl chr19:39,883,077...39,904,269
JBrowse link
G Tmem237 transmembrane protein 237 located_in
is_active_in
ISO
IBA
(PMID:22152675)
PMID:21873635
(MGI:5315664|PMID:22152675)
RGD PMID:22152675 PMID:21873635 MGI:5315664, RGD:13792537 NCBI chr 9:60,533,348...60,569,253
Ensembl chr 9:60,535,233...60,572,567
JBrowse link
G Tmem67 transmembrane protein 67 located_in
is_active_in
ISO
IBA
(PMID:26595381)
PMID:21873635
RGD PMID:26595381 PMID:21873635 RGD:13792537 NCBI chr 5:25,536,458...25,589,378
Ensembl chr 5:25,536,458...25,589,334
JBrowse link
G Tmem80 transmembrane protein 80 located_in
is_active_in
ISO
IBA
(MGI:5770161|PMID:26982032)
PMID:21873635
RGD PMID:26982032 PMID:21873635 MGI:5770161, RGD:13792537 NCBI chr 1:196,435,375...196,444,368 JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 located_in ISO
ISS
IEA
(PMID:26487268)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:26487268 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:92,073,622...92,110,427
Ensembl chr 9:92,073,640...92,108,977
JBrowse link
G Ttbk2 tau tubulin kinase 2 located_in
is_active_in
ISO
IBA
(PMID:23141541)
PMID:21873635
(MGI:5493390|PMID:23141541)
RGD PMID:23141541 PMID:21873635 MGI:5493390, RGD:13792537 NCBI chr 3:107,691,123...107,802,911
Ensembl chr 3:107,697,340...107,803,223
JBrowse link
G Unc119b unc-119 lipid binding chaperone B located_in ISO (PMID:22085962) RGD PMID:22085962 NCBI chr12:41,478,808...41,491,432
Ensembl chr12:41,478,808...41,491,432
JBrowse link
MKS complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 part_of ISS
ISO
GO_REF:0000024
(MGI:5300833|PMID:22179047)
UniProt
RGD
PMID:22179047 GO_REF:0000024 MGI:5300833 NCBI chr 1:15,768,047...15,886,744
Ensembl chr 1:15,762,462...15,891,041
JBrowse link
G B9d1 B9 domain containing 1 part_of IBA
ISO
ISS
PMID:21873635
(MGI:5288576|PMID:21725307), (MGI:5300833|PMID:22179047)
GO_REF:0000024
RGD
UniProt
PMID:21725307 PMID:22179047 PMID:21873635 GO_REF:0000024 MGI:5288576 MGI:5300833, RGD:13792537 NCBI chr10:46,186,222...46,196,309
Ensembl chr10:46,186,691...46,196,008
JBrowse link
G B9d2 B9 domain containing 2 part_of ISS
ISO
IBA
GO_REF:0000024
(MGI:5300833|PMID:22179047)
PMID:21873635
UniProt
RGD
PMID:22179047 PMID:21873635 GO_REF:0000024 MGI:5300833, RGD:13792537 NCBI chr 1:81,189,395...81,195,383
Ensembl chr 1:81,189,405...81,195,356
JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A part_of ISO (MGI:5288576|PMID:21725307), (MGI:5300833|PMID:22179047) RGD PMID:21725307 PMID:22179047 MGI:5288576 MGI:5300833 NCBI chr14:67,349,004...67,435,883
Ensembl chr14:67,351,353...67,435,949
JBrowse link
G Cep290 centrosomal protein 290 part_of ISO (MGI:5288576|PMID:21725307) RGD PMID:21725307 MGI:5288576 NCBI chr 7:35,310,071...35,399,392
Ensembl chr 7:35,310,199...35,399,392
JBrowse link
G Kctd10 potassium channel tetramerization domain containing 10 part_of ISO (MGI:5300833|PMID:22179047) RGD PMID:22179047 MGI:5300833 NCBI chr12:42,230,159...42,248,792
Ensembl chr12:42,230,269...42,248,783
JBrowse link
G Mks1 MKS transition zone complex subunit 1 part_of IBA
ISO
IEA
ISS
PMID:21873635
(MGI:5288576|PMID:21725307), (MGI:5300833|PMID:22179047)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21725307 PMID:22179047 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:5288576 MGI:5300833, RGD:13792537 NCBI chr10:72,655,921...72,667,007
Ensembl chr10:72,655,921...72,666,655
JBrowse link
G Tctn1 tectonic family member 1 part_of IBA
ISO
PMID:21873635
(MGI:5288576|PMID:21725307), (MGI:5300833|PMID:22179047)
RGD PMID:21725307 PMID:22179047 PMID:21873635 MGI:5288576 MGI:5300833, RGD:13792537 NCBI chr12:34,309,795...34,347,190
Ensembl chr12:34,309,897...34,342,267
JBrowse link
G Tctn2 tectonic family member 2 part_of IBA
ISO
ISS
PMID:21873635
(MGI:5288576|PMID:21725307), (MGI:5300833|PMID:22179047)
GO_REF:0000024
RGD
UniProt
PMID:21725307 PMID:22179047 PMID:21873635 GO_REF:0000024 MGI:5288576 MGI:5300833, RGD:13792537 NCBI chr12:31,982,440...32,007,242 JBrowse link
G Tmem107 transmembrane protein 107 part_of ISO
ISS
IBA
(PMID:26595381)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:26595381 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:53,772,153...53,774,685
Ensembl chr10:53,771,784...53,774,676
JBrowse link
G Tmem17 transmembrane protein 17 part_of ISS
ISO
GO_REF:0000024
(MGI:5300833|PMID:22179047)
UniProt
RGD
PMID:22179047 GO_REF:0000024 MGI:5300833 NCBI chr14:96,483,648...96,524,238
Ensembl chr14:96,518,793...96,524,233
JBrowse link
G Tmem216 transmembrane protein 216 part_of ISS
ISO
GO_REF:0000024
(MGI:5288576|PMID:21725307)
UniProt
RGD
PMID:21725307 GO_REF:0000024 MGI:5288576 NCBI chr 1:207,196,454...207,201,704
Ensembl chr 1:207,196,454...207,201,754
JBrowse link
G Tmem231 transmembrane protein 231 part_of ISS
ISO
GO_REF:0000024
(MGI:5300833|PMID:22179047)
UniProt
RGD
PMID:22179047 GO_REF:0000024 MGI:5300833 NCBI chr19:39,883,077...39,904,296
Ensembl chr19:39,883,077...39,904,269
JBrowse link
G Tmem67 transmembrane protein 67 part_of IEA
ISO
ISS
GO_REF:0000002
(MGI:5288576|PMID:21725307)
GO_REF:0000024
InterPro
RGD
UniProt
PMID:21725307 GO_REF:0000002 GO_REF:0000024 MGI:5288576 NCBI chr 5:25,536,458...25,589,378
Ensembl chr 5:25,536,458...25,589,334
JBrowse link
photoreceptor connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07053509.2 located_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 3:107,013,265...107,054,324 JBrowse link
G Adgrv1 adhesion G protein-coupled receptor V1 located_in ISO (MGI:3774983|PMID:17906286) RGD PMID:17906286 MGI:3774983 NCBI chr 2:11,331,434...11,911,713
Ensembl chr 2:11,331,442...11,911,688
JBrowse link
G Alpk1 alpha-kinase 1 located_in ISO (MGI:6717246|PMID:30967659) RGD PMID:30967659 MGI:6717246 NCBI chr 2:216,126,939...216,247,180
Ensembl chr 2:216,128,825...216,247,157
JBrowse link
G Arl3 ADP ribosylation factor like GTPase 3 located_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:12417528)
UniProt
Ensembl
RGD
PMID:12417528 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:245,400,659...245,446,673
Ensembl chr 1:245,400,550...245,446,820
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in ISO (MGI:5525015|PMID:23943788) RGD PMID:23943788 MGI:5525015 NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607
JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (MGI:3624140|PMID:16632484), (MGI:3653539|PMID:16682973), (MGI:5525015|PMID:23943788) RGD PMID:16632484 PMID:16682973 PMID:23943788 MGI:3624140 MGI:3653539 MGI:5525015 NCBI chr 7:35,310,071...35,399,392
Ensembl chr 7:35,310,199...35,399,392
JBrowse link
G Cetn1 centrin 1 located_in ISO (MGI:3525432|PMID:15347651), (MGI:6393223|PMID:30120214) RGD PMID:15347651 PMID:30120214 MGI:3525432 MGI:6393223 NCBI chr18:651,591...652,293
Ensembl chr18:651,591...652,293
JBrowse link
G Cetn2 centrin 2 located_in ISO (MGI:3525432|PMID:15347651) RGD PMID:15347651 MGI:3525432 NCBI chr  X:150,769,944...150,775,052
Ensembl chr  X:150,769,953...150,774,919
JBrowse link
G Cetn3 centrin 3 located_in ISO (MGI:3525432|PMID:15347651), (MGI:5303017|PMID:22031837), (MGI:5588761|PMID:24833722) RGD PMID:15347651 PMID:22031837 PMID:24833722 MGI:3525432 MGI:5303017 MGI:5588761 NCBI chr 2:12,089,025...12,101,828
Ensembl chr 2:12,089,226...12,101,828
JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in ISO (MGI:5770162|PMID:26974433) RGD PMID:26974433 MGI:5770162 NCBI chr20:10,687,863...10,694,736
Ensembl chr20:10,687,863...10,694,737
JBrowse link
G Fam161a FAM161 centrosomal protein A located_in
is_active_in
IDA
IBA
ISO
PMID:22940612
PMID:21873635
(MGI:5438885|PMID:22791751), (MGI:5442623|PMID:22940612), (MGI:5588761|PMID:24833722)
(PMID:22940612)
RGD PMID:22791751 PMID:22940612 PMID:24833722 PMID:22940612 PMID:21873635 MGI:5438885 MGI:5442623 MGI:5588761, RGD:8553427, RGD:13792537 NCBI chr14:97,009,449...97,027,865
Ensembl chr14:97,009,491...97,028,588
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in ISO (MGI:3757777|PMID:17881533) RGD PMID:17881533 MGI:3757777 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Ift122 intraflagellar transport 122 located_in ISO (MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:3839506 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458
JBrowse link
G Ift140 intraflagellar transport 140 located_in ISO (MGI:4460838|PMID:20368623), (MGI:5604762|PMID:24619649) RGD PMID:20368623 PMID:24619649 MGI:4460838 MGI:5604762 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433
JBrowse link
G Ift20 intraflagellar transport 20 located_in ISO (MGI:5317282|PMID:21307337) RGD PMID:21307337 MGI:5317282 NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124
JBrowse link
G Ift52 intraflagellar transport 52 located_in ISO (MGI:4460838|PMID:20368623) RGD PMID:20368623 MGI:4460838 NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980
JBrowse link
G Ift57 intraflagellar transport 57 located_in ISO (MGI:4460838|PMID:20368623) RGD PMID:20368623 MGI:4460838 NCBI chr11:51,051,520...51,124,909
Ensembl chr11:51,059,611...51,124,812
JBrowse link
G Ift88 intraflagellar transport 88 located_in ISO (MGI:3839506|PMID:19208653), (MGI:4460838|PMID:20368623) RGD PMID:19208653 PMID:20368623 MGI:3839506 MGI:4460838 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147
JBrowse link
G Iqcb1 IQ motif containing B1 located_in ISO (PMID:15723066)
(MGI:3763297|PMID:15723066)
RGD PMID:15723066 MGI:3763297 NCBI chr11:63,905,595...63,960,141
Ensembl chr11:63,905,590...63,960,093
JBrowse link
G Kif17 kinesin family member 17 located_in ISO (MGI:4353477|PMID:19384852) RGD PMID:19384852 MGI:4353477 NCBI chr 5:150,482,288...150,521,471
Ensembl chr 5:150,481,578...150,519,638
JBrowse link
G Kif3a kinesin family member 3a located_in ISO (MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:3839506 NCBI chr10:37,725,930...37,761,183
Ensembl chr10:37,725,970...37,759,191
JBrowse link
G Kifap3 kinesin-associated protein 3 located_in ISO (MGI:4353477|PMID:19384852) RGD PMID:19384852 MGI:4353477 NCBI chr13:76,127,702...76,264,654
Ensembl chr13:76,127,696...76,264,650
JBrowse link
G Lca5 lebercilin LCA5 located_in ISO
IDA
(PMID:21606596)
(MGI:5050784|PMID:21606596)
PMID:17546029
RGD PMID:21606596 PMID:17546029 MGI:5050784, RGD:14397561 NCBI chr 8:84,307,696...84,375,025
Ensembl chr 8:84,317,659...84,374,956
JBrowse link
G Mak male germ cell-associated kinase located_in ISO (MGI:5298333|PMID:21148103) RGD PMID:21148103 MGI:5298333 NCBI chr17:23,683,674...23,731,125
Ensembl chr17:23,693,878...23,730,001
JBrowse link
G Myo7a myosin VIIA located_in ISO (MGI:1343017|PMID:10414956) RGD PMID:10414956 MGI:1343017 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Nphp1 nephrocystin 1 located_in ISO (MGI:4821072|PMID:16885411) RGD PMID:16885411 MGI:4821072 NCBI chr 3:114,960,650...115,016,234
Ensembl chr 3:114,960,650...115,016,234
JBrowse link
G Nphp4 nephrocystin 4 located_in ISO (MGI:4867588|PMID:21078623) RGD PMID:21078623 MGI:4867588 NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706
JBrowse link
G Pcdhb22 protocadherin beta 22 located_in ISO (MGI:3775581|PMID:18279309) RGD PMID:18279309 MGI:3775581 Ensembl chr18:29,223,149...29,225,536 JBrowse link
G Pdzd7 PDZ domain containing 7 colocalizes_with IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:243,888,295...243,907,778
Ensembl chr 1:243,888,281...243,906,839
JBrowse link
G RGD1306271 similar to KIAA1549 protein located_in ISO (MGI:6393223|PMID:30120214) RGD PMID:30120214 MGI:6393223 NCBI chr 4:66,840,674...66,968,407
Ensembl chr 4:66,760,162...66,968,436
JBrowse link
G Rp1 RP1, axonemal microtubule associated located_in ISO (MGI:2156902|PMID:11773008), (MGI:2676521|PMID:14507858)
(PMID:11767049)
RGD PMID:11767049 PMID:11773008 PMID:14507858 MGI:2156902 MGI:2676521 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
JBrowse link
G Rp1l1 RP1 like 1 located_in ISO (MGI:4353917|PMID:19657028) RGD PMID:19657028 MGI:4353917 NCBI chr15:38,259,595...38,271,269
Ensembl chr15:38,259,928...38,270,316
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (MGI:1354839|PMID:10725384) RGD PMID:10725384 MGI:1354839 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882
JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in ISO (MGI:5608598|PMID:25398945) RGD PMID:25398945 MGI:5608598 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605
JBrowse link
G Rpgrip1l Rpgrip1-like is_active_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:17558407 PMID:21873635 RGD:11537356, RGD:13792537 NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083
JBrowse link
G Septin2 septin 2 located_in ISO (PMID:23572511) RGD PMID:23572511 NCBI chr 9:94,018,141...94,051,386
Ensembl chr 9:94,018,208...94,051,386
JBrowse link
G Spata7 spermatogenesis associated 7 located_in ISS
ISO
GO_REF:0000024
(MGI:5608598|PMID:25398945)
UniProt
RGD
PMID:25398945 GO_REF:0000024 MGI:5608598 NCBI chr 6:117,879,828...117,925,284
Ensembl chr 6:117,879,823...117,925,284
JBrowse link
G Sptbn5 spectrin, beta, non-erythrocytic 5 located_in ISO (PMID:23704327) RGD PMID:23704327 NCBI chr 3:107,013,783...107,054,878 JBrowse link
G Tbcc tubulin folding cofactor C located_in ISO (PMID:12417528) RGD PMID:12417528 NCBI chr 9:14,098,875...14,100,026
Ensembl chr 9:14,098,868...14,100,042
JBrowse link
G Tmem237 transmembrane protein 237 located_in ISO (MGI:4830641|PMID:20375344) RGD PMID:20375344 MGI:4830641 NCBI chr 9:60,533,348...60,569,253
Ensembl chr 9:60,535,233...60,572,567
JBrowse link
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase located_in
is_active_in
ISO
IBA
(PMID:21159800)
PMID:21873635
(MGI:4939557|PMID:21159800)
RGD PMID:21159800 PMID:21873635 MGI:4939557, RGD:13792537 NCBI chr 5:55,388,033...55,399,937
Ensembl chr 5:55,387,632...55,399,937
JBrowse link
G Tsga10ip testis specific 10 interacting protein is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:202,700,576...202,714,668
Ensembl chr 1:202,700,578...202,714,798
JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 located_in ISO (MGI:2677624|PMID:14520415) RGD PMID:14520415 MGI:2677624 NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418
JBrowse link
G Ush1c USH1 protein network component harmonin colocalizes_with IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671
JBrowse link
G Ush1g USH1 protein network component sans located_in ISO (MGI:3774983|PMID:17906286) RGD PMID:17906286 MGI:3774983 NCBI chr10:100,559,721...100,563,590
Ensembl chr10:100,557,629...100,563,590
JBrowse link
G Ush2a usherin colocalizes_with
located_in
IDA
IEA
ISO
GO_REF:0000107
(MGI:3774983|PMID:17906286), (MGI:4950337|PMID:21212183)
Ensembl
RGD
PMID:17906286 PMID:21212183 PMID:16434480 GO_REF:0000107 MGI:3774983 MGI:4950337, RGD:1600128 NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922
JBrowse link
G Wdr19 WD repeat domain 19 located_in ISO (MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:3839506 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288
JBrowse link
G Whrn whirlin colocalizes_with
located_in
IDA
ISO
IEA
IBA
(MGI:3774983|PMID:17906286), (MGI:4950337|PMID:21212183)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:17906286 PMID:21212183 PMID:16434480 PMID:21873635 GO_REF:0000107 MGI:3774983 MGI:4950337, RGD:1600128, RGD:13792537 NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223
JBrowse link
photoreceptor distal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 located_in ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 1:15,768,047...15,886,744
Ensembl chr 1:15,762,462...15,891,041
JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 7:35,310,071...35,399,392
Ensembl chr 7:35,310,199...35,399,392
JBrowse link
G Nphp1 nephrocystin 1 located_in ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 3:114,960,650...115,016,234
Ensembl chr 3:114,960,650...115,016,234
JBrowse link
G Nphp4 nephrocystin 4 located_in ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882
JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605
JBrowse link
G Spata7 spermatogenesis associated 7 is_active_in
located_in
IBA
ISO
IEA
PMID:21873635
MGI:5660490 (MGI:6194004|PMID:29899041)
GO_REF:0000107
RGD
Ensembl
PMID:29899041 PMID:21873635 GO_REF:0000107 MGI:6194004, RGD:13792537 NCBI chr 6:117,879,828...117,925,284
Ensembl chr 6:117,879,823...117,925,284
JBrowse link
photoreceptor proximal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep290 centrosomal protein 290 located_in ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 7:35,310,071...35,399,392
Ensembl chr 7:35,310,199...35,399,392
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20009
    cellular anatomical entity 19717
      ciliary transition zone 79
        MKS complex 14
        NPHP complex 0
        Y-shaped link 0
        central cylinder 0
        ciliary necklace 0
        photoreceptor connecting cilium + 49
Path 2
Term Annotations click to browse term
  cellular_component 20009
    cellular anatomical entity 19717
      organelle 13110
        membrane-bounded organelle 11717
          cilium 724
            ciliary transition zone 79
              MKS complex 14
              NPHP complex 0
              Y-shaped link 0
              central cylinder 0
              ciliary necklace 0
              photoreceptor connecting cilium + 49
paths to the root