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ONTOLOGY REPORT - ANNOTATIONS


Term:ciliary transition zone
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Accession:GO:0035869 term browser browse the term
Definition:A region of the cilium between the basal body and proximal segment that is characterized by Y-shaped assemblages that connect axonemal microtubules to the ciliary membrane. The ciliary transition zone appears to function as a gate that controls ciliary membrane composition and separates the cytosol from the ciliary plasm.
Comment:Depending on the species, this region may have a distinct geometrically shaped electron-dense structure within the axonemal lumen visible in electron microscopy images; most animals don't display this inner structure. The axoneme extends through the ciliary transition zone, but only consists of the outer doublets. The central pair, axonemal spokes, and dynein complexes are not found in this part of the ciliary shaft. Note that the connecting cilium of the photoreceptor cells is thought to be equivalent to the transition zone.
Synonyms:exact_synonym: cilial transition zone;   cilium transition zone
 related_synonym: connecting cilium


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ciliary transition zone term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl3 ADP ribosylation factor like GTPase 3 ISO (MGI:5925653|PMID:26455799) RGD PMID:26455799 MGI:5925653 NCBI chr 1:266,287,015...266,333,099
Ensembl chr 1:266,287,017...266,333,105
JBrowse link
G B9d1 B9 domain containing 1 ISS
ISO
GO_REF:0000024
(MGI:5300833|PMID:22179047)
UniProt
RGD
PMID:22179047 GO_REF:0000024 MGI:5300833 NCBI chr10:47,784,294...47,794,399
Ensembl chr10:47,785,033...47,792,590
Ensembl chr10:47,785,033...47,792,590
JBrowse link
G B9d2 B9 domain containing 2 ISO (PMID:15916950), (PMID:19208769), (PMID:21422230), (PMID:21763481) RGD PMID:15916950 PMID:19208769 PMID:21422230 PMID:21763481 NCBI chr 1:82,473,254...82,479,704
Ensembl chr 1:82,473,737...82,479,900
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO (PMID:23943788) RGD PMID:23943788 NCBI chr 8:64,115,005...64,154,432
Ensembl chr 8:64,121,392...64,154,396
JBrowse link
G Bbs9 Bardet-Biedl syndrome 9 ISO (PMID:23943788) RGD PMID:23943788 NCBI chr 8:23,491,929...24,074,524
Ensembl chr 8:23,492,621...24,074,536
Ensembl chr 8:23,492,621...24,074,536
JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A ISO (MGI:5300833|PMID:22179047), (MGI:5696765|PMID:24947469) RGD PMID:22179047 PMID:24947469 MGI:5300833 MGI:5696765 NCBI chr14:71,895,128...71,979,452
Ensembl chr14:71,895,246...71,973,419
JBrowse link
G Ccdc66 coiled-coil domain containing 66 NOT|colocalizes_with ISO (PMID:28235840) RGD PMID:28235840 NCBI chr16:3,107,119...3,139,188
Ensembl chr16:3,110,239...3,139,177
JBrowse link
G Ccsap centriole, cilia and spindle-associated protein ISO
IBA
(PMID:22493317)
PMID:21873635
RGD PMID:22493317, PMID:21873635 RGD:13792537 NCBI chr19:56,615,326...56,634,031
Ensembl chr19:56,617,399...56,633,633
JBrowse link
G Cdkl1 cyclin dependent kinase like 1 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 6:92,076,247...92,123,108
Ensembl chr 6:92,077,416...92,121,351
JBrowse link
G Cep131 centrosomal protein 131 ISO (PMID:24415959)
(MGI:5647985|PMID:24415959)
RGD PMID:24415959 MGI:5647985 NCBI chr10:109,243,240...109,267,636
Ensembl chr10:109,243,039...109,267,500
JBrowse link
G Cep290 centrosomal protein 290 ISO (PMID:23943788)
(MGI:5424301|PMID:22446187)
RGD PMID:22446187 PMID:23943788 MGI:5424301 NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
JBrowse link
G Cetn3 centrin 3 ISO (MGI:5303017|PMID:22031837) RGD PMID:22031837 MGI:5303017 NCBI chr 2:12,101,473...12,115,009
Ensembl chr 2:12,102,487...12,115,009
JBrowse link
G Cfap36 cilia and flagella associated protein 36 ISO (PMID:26455799) RGD PMID:26455799 NCBI chr14:113,618,954...113,644,874
Ensembl chr14:113,618,964...113,644,779
JBrowse link
G Cibar1 CBY1 interacting BAR domain containing 1 ISO (MGI:6152361|PMID:29459677) RGD PMID:29459677 MGI:6152361 NCBI chr 5:25,732,457...25,750,953
Ensembl chr 5:25,732,644...25,750,826
JBrowse link
G Cplane1 ciliogenesis and planar polarity effector 1 ISO
IBA
(MGI:5648689|PMID:25877302)
PMID:21873635
RGD PMID:25877302, PMID:21873635 MGI:5648689, RGD:13792537 NCBI chr 2:57,274,175...57,350,003
NCBI chr 2:57,444,373...57,472,465
Ensembl chr 2:57,276,919...57,348,481
JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 ISO
ISS
(PMID:26130459)
GO_REF:0000024
RGD
UniProt
PMID:26130459 GO_REF:0000024 NCBI chr 6:7,900,962...7,933,795
Ensembl chr 6:7,900,972...7,933,796
JBrowse link
G Kifap3 kinesin-associated protein 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:82,072,497...82,217,256
Ensembl chr13:82,072,497...82,217,252
JBrowse link
G LOC108348055 B9 domain-containing protein 1 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:49,019,745...49,029,851
Ensembl chr10:47,785,033...47,792,590
Ensembl chr10:47,785,033...47,792,590
JBrowse link
G Macir macrophage immunometabolism regulator ISO (PMID:22085962) RGD PMID:22085962 NCBI chr 9:111,327,333...111,347,428
Ensembl chr 9:111,327,402...111,347,430
JBrowse link
G Mks1 MKS transition zone complex subunit 1 ISO (MGI:5288576|PMID:21725307), (MGI:5544506|PMID:24302887) RGD PMID:21725307 PMID:24302887 MGI:5288576 MGI:5544506 NCBI chr10:75,149,814...75,160,481
Ensembl chr10:75,149,814...75,160,480
JBrowse link
G Nek4 NIMA-related kinase 4 IDA RGD PMID:21685204 RGD:13204813 NCBI chr16:7,035,002...7,080,272
Ensembl chr16:7,035,068...7,075,554
JBrowse link
G Nphp1 nephrocystin 1 ISO (MGI:5013991|PMID:21565611), (MGI:5544506|PMID:24302887), (MGI:5578232|PMID:20169535) RGD PMID:20169535 PMID:21565611 PMID:24302887 MGI:5013991 MGI:5544506 MGI:5578232 NCBI chr 3:120,316,048...120,370,089
Ensembl chr 3:120,316,047...120,373,500
JBrowse link
G Nphp4 nephrocystin 4 ISO
IBA
(MGI:5578232|PMID:20169535)
PMID:21873635
RGD PMID:20169535, PMID:21873635 MGI:5578232, RGD:13792537 NCBI chr 5:169,647,581...169,744,662
Ensembl chr 5:169,659,188...169,744,660
JBrowse link
G Pcm1 pericentriolar material 1 ISO (PMID:24415959) RGD PMID:24415959 NCBI chr16:54,040,721...54,137,675
Ensembl chr16:54,040,721...54,137,660
JBrowse link
G Rpgrip1 RPGR interacting protein 1 IDA RGD PMID:21685204 RGD:13204813 NCBI chr15:28,521,287...28,575,046
Ensembl chr15:28,522,737...28,574,737
JBrowse link
G Rpgrip1l Rpgrip1-like ISO
IBA
IDA
(PMID:26595381)
PMID:21873635
(MGI:5449641|PMID:22927466), (MGI:6149643|PMID:29487109)
RGD PMID:22927466 PMID:26595381 PMID:29487109, PMID:21873635, PMID:21685204 MGI:5449641 MGI:6149643, RGD:13792537, RGD:13204813 NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
JBrowse link
G Septin2 septin 2 ISO (MGI:5544506|PMID:24302887) RGD PMID:24302887 MGI:5544506 NCBI chr 9:100,624,876...100,658,053
Ensembl chr 9:100,624,876...100,658,050
JBrowse link
G Tctn1 tectonic family member 1 ISO (MGI:5288576|PMID:21725307) RGD PMID:21725307 MGI:5288576 NCBI chr12:39,790,948...39,828,215
Ensembl chr12:39,790,965...39,824,064
JBrowse link
G Tctn2 tectonic family member 2 ISO (MGI:6149643|PMID:29487109) RGD PMID:29487109 MGI:6149643 NCBI chr12:37,400,896...37,427,256
Ensembl chr12:37,363,906...37,425,596
JBrowse link
G Tmem107 transmembrane protein 107 ISO
IBA
ISS
(PMID:26595381)
PMID:21873635
(MGI:6103051|PMID:26518474)
GO_REF:0000024
RGD
UniProt
PMID:26518474 PMID:26595381, PMID:21873635 GO_REF:0000024 MGI:6103051, RGD:13792537 NCBI chr10:55,653,694...55,656,270
Ensembl chr10:55,653,946...55,656,270
JBrowse link
G Tmem17 transmembrane protein 17 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:5300833|PMID:22179047)
UniProt
RGD
PMID:22179047, PMID:21873635 GO_REF:0000024 MGI:5300833, RGD:13792537 NCBI chr14:107,268,235...107,308,546
Ensembl chr14:107,268,128...107,308,542
JBrowse link
G Tmem216 transmembrane protein 216 ISO
IBA
(MGI:5288576|PMID:21725307)
PMID:21873635
RGD PMID:21725307, PMID:21873635 MGI:5288576, RGD:13792537 NCBI chr 1:226,601,201...226,606,417
Ensembl chr 1:226,601,201...226,606,344
JBrowse link
G Tmem231 transmembrane protein 231 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:5300833|PMID:22179047)
UniProt
RGD
PMID:22179047, PMID:21873635 GO_REF:0000024 MGI:5300833, RGD:13792537 NCBI chr19:44,137,444...44,158,624
Ensembl chr19:44,137,423...44,158,624
JBrowse link
G Tmem237 transmembrane protein 237 ISO
IBA
(PMID:22152675)
PMID:21873635
(MGI:5315664|PMID:22152675)
RGD PMID:22152675, PMID:21873635 MGI:5315664, RGD:13792537 NCBI chr 9:65,882,063...65,917,424
Ensembl chr 9:65,882,054...65,917,132
JBrowse link
G Tmem67 transmembrane protein 67 ISO (PMID:26595381) RGD PMID:26595381 NCBI chr 5:25,666,138...25,721,056
Ensembl chr 5:25,666,137...25,721,072
JBrowse link
G Tmem80 transmembrane protein 80 ISO
IBA
(MGI:5770161|PMID:26982032)
PMID:21873635
RGD PMID:26982032, PMID:21873635 MGI:5770161, RGD:13792537 NCBI chr 1:214,317,300...214,326,293
Ensembl chr 1:214,317,682...214,326,294
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:26487268)
Ensembl
UniProt
RGD
PMID:26487268 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:98,621,499...98,658,223
Ensembl chr 9:98,621,506...98,656,901
JBrowse link
G Ttbk2 tau tubulin kinase 2 ISO
IBA
(PMID:23141541)
PMID:21873635
(MGI:5493390|PMID:23141541)
RGD PMID:23141541, PMID:21873635 MGI:5493390, RGD:13792537 NCBI chr 3:112,677,932...112,789,615
Ensembl chr 3:112,684,152...112,789,289
JBrowse link
G Unc119b unc-119 lipid binding chaperone B ISO (PMID:22085962) RGD PMID:22085962 NCBI chr12:47,239,663...47,252,286
Ensembl chr12:47,218,969...47,252,286
JBrowse link
MKS complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISS
ISO
GO_REF:0000024
(MGI:5300833|PMID:22179047)
UniProt
RGD
PMID:22179047 GO_REF:0000024 MGI:5300833 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G B9d1 B9 domain containing 1 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:5288576|PMID:21725307), (MGI:5300833|PMID:22179047)
UniProt
RGD
PMID:21725307 PMID:22179047, PMID:21873635 GO_REF:0000024 MGI:5288576 MGI:5300833, RGD:13792537 NCBI chr10:47,784,294...47,794,399
Ensembl chr10:47,785,033...47,792,590
Ensembl chr10:47,785,033...47,792,590
JBrowse link
G B9d2 B9 domain containing 2 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:5300833|PMID:22179047)
UniProt
RGD
PMID:22179047, PMID:21873635 GO_REF:0000024 MGI:5300833, RGD:13792537 NCBI chr 1:82,473,254...82,479,704
Ensembl chr 1:82,473,737...82,479,900
JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A ISO (MGI:5288576|PMID:21725307), (MGI:5300833|PMID:22179047) RGD PMID:21725307 PMID:22179047 MGI:5288576 MGI:5300833 NCBI chr14:71,895,128...71,979,452
Ensembl chr14:71,895,246...71,973,419
JBrowse link
G Cep290 centrosomal protein 290 ISO (MGI:5288576|PMID:21725307) RGD PMID:21725307 MGI:5288576 NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
JBrowse link
G Kctd10 potassium channel tetramerization domain containing 10 ISO (MGI:5300833|PMID:22179047) RGD PMID:22179047 MGI:5300833 NCBI chr12:47,992,079...48,010,531
Ensembl chr12:47,992,091...48,010,583
JBrowse link
G LOC108348055 B9 domain-containing protein 1 ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:49,019,745...49,029,851
Ensembl chr10:47,785,033...47,792,590
Ensembl chr10:47,785,033...47,792,590
JBrowse link
G Mks1 MKS transition zone complex subunit 1 IEA
IBA
ISO
ISS
GO_REF:0000107
PMID:21873635
(MGI:5288576|PMID:21725307), (MGI:5300833|PMID:22179047)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21725307 PMID:22179047, PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:5288576 MGI:5300833, RGD:13792537 NCBI chr10:75,149,814...75,160,481
Ensembl chr10:75,149,814...75,160,480
JBrowse link
G Tctn1 tectonic family member 1 ISO
IBA
(MGI:5288576|PMID:21725307), (MGI:5300833|PMID:22179047)
PMID:21873635
RGD PMID:21725307 PMID:22179047, PMID:21873635 MGI:5288576 MGI:5300833, RGD:13792537 NCBI chr12:39,790,948...39,828,215
Ensembl chr12:39,790,965...39,824,064
JBrowse link
G Tctn2 tectonic family member 2 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:5288576|PMID:21725307), (MGI:5300833|PMID:22179047)
UniProt
RGD
PMID:21725307 PMID:22179047, PMID:21873635 GO_REF:0000024 MGI:5288576 MGI:5300833, RGD:13792537 NCBI chr12:37,400,896...37,427,256
Ensembl chr12:37,363,906...37,425,596
JBrowse link
G Tmem107 transmembrane protein 107 ISO
IBA
ISS
(PMID:26595381)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:26595381, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:55,653,694...55,656,270
Ensembl chr10:55,653,946...55,656,270
JBrowse link
G Tmem17 transmembrane protein 17 ISS
ISO
GO_REF:0000024
(MGI:5300833|PMID:22179047)
UniProt
RGD
PMID:22179047 GO_REF:0000024 MGI:5300833 NCBI chr14:107,268,235...107,308,546
Ensembl chr14:107,268,128...107,308,542
JBrowse link
G Tmem216 transmembrane protein 216 ISS
ISO
GO_REF:0000024
(MGI:5288576|PMID:21725307)
UniProt
RGD
PMID:21725307 GO_REF:0000024 MGI:5288576 NCBI chr 1:226,601,201...226,606,417
Ensembl chr 1:226,601,201...226,606,344
JBrowse link
G Tmem231 transmembrane protein 231 ISS
ISO
GO_REF:0000024
(MGI:5300833|PMID:22179047)
UniProt
RGD
PMID:22179047 GO_REF:0000024 MGI:5300833 NCBI chr19:44,137,444...44,158,624
Ensembl chr19:44,137,423...44,158,624
JBrowse link
G Tmem67 transmembrane protein 67 IEA
ISO
ISS
GO_REF:0000002
(MGI:5288576|PMID:21725307)
GO_REF:0000024
InterPro
RGD
UniProt
PMID:21725307 GO_REF:0000002 GO_REF:0000024 MGI:5288576 NCBI chr 5:25,666,138...25,721,056
Ensembl chr 5:25,666,137...25,721,072
JBrowse link
photoreceptor connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 ISO (MGI:3774983|PMID:17906286) RGD PMID:17906286 MGI:3774983 NCBI chr 2:8,926,843...9,504,455
Ensembl chr 2:8,926,850...9,504,134
JBrowse link
G Arl3 ADP ribosylation factor like GTPase 3 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:12417528)
Ensembl
UniProt
RGD
PMID:12417528 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:266,287,015...266,333,099
Ensembl chr 1:266,287,017...266,333,105
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO (MGI:5525015|PMID:23943788) RGD PMID:23943788 MGI:5525015 NCBI chr 8:64,115,005...64,154,432
Ensembl chr 8:64,121,392...64,154,396
JBrowse link
G Cep290 centrosomal protein 290 ISO (MGI:3624140|PMID:16632484), (MGI:3653539|PMID:16682973), (MGI:5525015|PMID:23943788) RGD PMID:16632484 PMID:16682973 PMID:23943788 MGI:3624140 MGI:3653539 MGI:5525015 NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
JBrowse link
G Cetn1 centrin 1 ISO (MGI:3525432|PMID:15347651), (MGI:6393223|PMID:30120214) RGD PMID:15347651 PMID:30120214 MGI:3525432 MGI:6393223 NCBI chr18:785,972...786,674
Ensembl chr18:785,972...786,674
JBrowse link
G Cetn2 centrin 2 ISO (MGI:3525432|PMID:15347651) RGD PMID:15347651 MGI:3525432 NCBI chr  X:152,927,852...152,933,095
Ensembl chr  X:152,927,718...152,932,953
JBrowse link
G Cetn3 centrin 3 ISO (MGI:3525432|PMID:15347651), (MGI:5303017|PMID:22031837), (MGI:5588761|PMID:24833722) RGD PMID:15347651 PMID:22031837 PMID:24833722 MGI:3525432 MGI:5303017 MGI:5588761 NCBI chr 2:12,101,473...12,115,009
Ensembl chr 2:12,102,487...12,115,009
JBrowse link
G Cfap410 cilia and flagella associated protein 410 ISO (MGI:5770162|PMID:26974433) RGD PMID:26974433 MGI:5770162 NCBI chr20:11,417,428...11,424,301
Ensembl chr20:11,417,429...11,424,324
JBrowse link
G Fam161a FAM161 centrosomal protein A IDA
IBA
ISO
PMID:22940612
PMID:21873635
(MGI:5438885|PMID:22791751), (MGI:5442623|PMID:22940612), (MGI:5588761|PMID:24833722)
(PMID:22940612)
RGD PMID:22791751 PMID:22940612 PMID:24833722, PMID:22940612, PMID:21873635 MGI:5438885 MGI:5442623 MGI:5588761, RGD:8553427, RGD:13792537 NCBI chr14:107,785,029...107,803,765
Ensembl chr14:107,785,029...107,798,115
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (MGI:3757777|PMID:17881533) RGD PMID:17881533 MGI:3757777 NCBI chr 8:116,433,302...116,438,038
Ensembl chr 8:116,433,302...116,438,038
JBrowse link
G Ift122 intraflagellar transport 122 ISO (MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:3839506 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Ift140 intraflagellar transport 140 ISO (MGI:4460838|PMID:20368623), (MGI:5604762|PMID:24619649) RGD PMID:20368623 PMID:24619649 MGI:4460838 MGI:5604762 NCBI chr10:14,373,668...14,461,509
Ensembl chr10:14,373,679...14,461,160
JBrowse link
G Ift20 intraflagellar transport 20 ISO (MGI:5317282|PMID:21307337) RGD PMID:21307337 MGI:5317282 NCBI chr10:65,805,808...65,811,353
Ensembl chr10:65,805,860...65,811,351
JBrowse link
G Ift52 intraflagellar transport 52 ISO (MGI:4460838|PMID:20368623) RGD PMID:20368623 MGI:4460838 NCBI chr 3:159,388,868...159,413,358
Ensembl chr 3:159,392,193...159,413,575
JBrowse link
G Ift57 intraflagellar transport 57 ISO (MGI:4460838|PMID:20368623) RGD PMID:20368623 MGI:4460838 NCBI chr11:53,664,638...53,731,779
Ensembl chr11:53,664,638...53,731,779
JBrowse link
G Ift88 intraflagellar transport 88 ISO (MGI:3839506|PMID:19208653), (MGI:4460838|PMID:20368623) RGD PMID:19208653 PMID:20368623 MGI:3839506 MGI:4460838 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
JBrowse link
G Iqcb1 IQ motif containing B1 ISO (PMID:15723066)
(MGI:3763297|PMID:15723066)
RGD PMID:15723066 MGI:3763297 NCBI chr11:66,824,059...66,878,585
Ensembl chr11:66,824,065...66,878,551
JBrowse link
G Kif17 kinesin family member 17 ISO (MGI:4353477|PMID:19384852) RGD PMID:19384852 MGI:4353477 NCBI chr 5:156,628,409...156,665,752
Ensembl chr 5:156,628,432...156,666,284
JBrowse link
G Kif3a kinesin family member 3a ISO (MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:3839506 NCBI chr10:38,918,705...38,953,958
Ensembl chr10:38,918,748...38,952,785
JBrowse link
G Kifap3 kinesin-associated protein 3 ISO (MGI:4353477|PMID:19384852) RGD PMID:19384852 MGI:4353477 NCBI chr13:82,072,497...82,217,256
Ensembl chr13:82,072,497...82,217,252
JBrowse link
G Lca5 lebercilin LCA5 IDA
ISO
PMID:17546029
(MGI:5050784|PMID:21606596)
(PMID:21606596)
RGD PMID:21606596, PMID:17546029 MGI:5050784, RGD:14397561 NCBI chr 8:90,926,309...90,984,271
Ensembl chr 8:90,926,311...90,984,224
JBrowse link
G Mak male germ cell-associated kinase ISO (MGI:5298333|PMID:21148103) RGD PMID:21148103 MGI:5298333 NCBI chr17:21,531,651...21,567,742
Ensembl chr17:21,521,505...21,568,440
JBrowse link
G Myo7a myosin VIIA ISO (MGI:1343017|PMID:10414956) RGD PMID:10414956 MGI:1343017 NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508
JBrowse link
G Nphp1 nephrocystin 1 ISO (MGI:4821072|PMID:16885411) RGD PMID:16885411 MGI:4821072 NCBI chr 3:120,316,048...120,370,089
Ensembl chr 3:120,316,047...120,373,500
JBrowse link
G Nphp4 nephrocystin 4 ISO (MGI:4867588|PMID:21078623) RGD PMID:21078623 MGI:4867588 NCBI chr 5:169,647,581...169,744,662
Ensembl chr 5:169,659,188...169,744,660
JBrowse link
G Pcdhb22 protocadherin beta 22 ISO (MGI:3775581|PMID:18279309) RGD PMID:18279309 MGI:3775581 NCBI chr18:30,590,864...30,595,456
Ensembl chr18:30,592,794...30,595,181
JBrowse link
G Pdzd7 PDZ domain containing 7 colocalizes_with IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:264,776,393...264,796,206
Ensembl chr 1:264,776,398...264,794,938
JBrowse link
G RGD1306271 similar to KIAA1549 protein ISO (MGI:6393223|PMID:30120214) RGD PMID:30120214 MGI:6393223 NCBI chr 4:65,834,933...65,962,722
Ensembl chr 4:65,834,035...65,962,539
JBrowse link
G Rp1 RP1, axonemal microtubule associated ISO (PMID:11767049)
(MGI:2156902|PMID:11773008), (MGI:2676521|PMID:14507858)
RGD PMID:11767049 PMID:11773008 PMID:14507858 MGI:2156902 MGI:2676521 NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
JBrowse link
G Rp1l1 RP1 like 1 ISO (MGI:4353917|PMID:19657028) RGD PMID:19657028 MGI:4353917 NCBI chr15:47,344,380...47,384,461
Ensembl chr15:47,373,120...47,383,508
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO (MGI:1354839|PMID:10725384) RGD PMID:10725384 MGI:1354839 NCBI chr  X:14,271,012...14,331,745
Ensembl chr  X:14,271,017...14,331,486
JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (MGI:5608598|PMID:25398945) RGD PMID:25398945 MGI:5608598 NCBI chr15:28,521,287...28,575,046
Ensembl chr15:28,522,737...28,574,737
JBrowse link
G Rpgrip1l Rpgrip1-like IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:17558407, PMID:21873635 RGD:11537356, RGD:13792537 NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
JBrowse link
G Septin2 septin 2 ISO (PMID:23572511) RGD PMID:23572511 NCBI chr 9:100,624,876...100,658,053
Ensembl chr 9:100,624,876...100,658,050
JBrowse link
G Spata7 spermatogenesis associated 7 ISS
ISO
GO_REF:0000024
(MGI:5608598|PMID:25398945)
UniProt
RGD
PMID:25398945 GO_REF:0000024 MGI:5608598 NCBI chr 6:122,603,248...122,648,718
Ensembl chr 6:122,603,269...122,648,699
JBrowse link
G Sptbn5 spectrin, beta, non-erythrocytic 5 ISO (PMID:23704327) RGD PMID:23704327 NCBI chr 3:111,833,411...111,875,551 JBrowse link
G Tbcc tubulin folding cofactor C ISO (PMID:12417528) RGD PMID:12417528 NCBI chr 9:16,405,187...16,406,338
Ensembl chr 9:16,405,185...16,406,338
JBrowse link
G Tmem237 transmembrane protein 237 ISO (MGI:4830641|PMID:20375344) RGD PMID:20375344 MGI:4830641 NCBI chr 9:65,882,063...65,917,424
Ensembl chr 9:65,882,054...65,917,132
JBrowse link
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase ISO
IBA
(PMID:21159800)
PMID:21873635
(MGI:4939557|PMID:21159800)
RGD PMID:21159800, PMID:21873635 MGI:4939557, RGD:13792537 NCBI chr 5:56,554,956...56,566,503
Ensembl chr 5:56,554,969...56,567,320
JBrowse link
G Tsga10ip testis specific 10 interacting protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:220,772,592...220,786,952
Ensembl chr 1:220,772,411...220,787,238
JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 ISO (MGI:2677624|PMID:14520415) RGD PMID:14520415 MGI:2677624 NCBI chr 6:122,920,308...122,974,525
Ensembl chr 6:122,920,317...122,974,522
JBrowse link
G Ush1c USH1 protein network component harmonin colocalizes_with IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:102,207,096...102,256,779
Ensembl chr 1:102,207,096...102,255,459
JBrowse link
G Ush1g USH1 protein network component sans ISO (MGI:3774983|PMID:17906286) RGD PMID:17906286 MGI:3774983 NCBI chr10:103,866,566...103,873,416
Ensembl chr10:103,869,377...103,873,246
JBrowse link
G Ush2a usherin colocalizes_with IDA
ISO
(MGI:3774983|PMID:17906286), (MGI:4950337|PMID:21212183) RGD PMID:17906286 PMID:21212183, PMID:16434480 MGI:3774983 MGI:4950337, RGD:1600128 NCBI chr13:106,750,738...107,434,195
Ensembl chr13:106,751,625...107,427,329
JBrowse link
G Wdr19 WD repeat domain 19 ISO (MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:3839506 NCBI chr14:44,705,012...44,767,120
Ensembl chr14:44,705,012...44,767,120
JBrowse link
G Whrn whirlin colocalizes_with IDA
IBA
ISO
IEA
PMID:21873635
(MGI:3774983|PMID:17906286), (MGI:4950337|PMID:21212183)
GO_REF:0000107
RGD
Ensembl
PMID:17906286 PMID:21212183, PMID:16434480, PMID:21873635 GO_REF:0000107 MGI:3774983 MGI:4950337, RGD:1600128, RGD:13792537 NCBI chr 5:79,235,541...79,317,206
Ensembl chr 5:79,234,950...79,317,206
JBrowse link
photoreceptor distal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769
JBrowse link
G Cep290 centrosomal protein 290 ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
JBrowse link
G Nphp1 nephrocystin 1 ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 3:120,316,048...120,370,089
Ensembl chr 3:120,316,047...120,373,500
JBrowse link
G Nphp4 nephrocystin 4 ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 5:169,647,581...169,744,662
Ensembl chr 5:169,659,188...169,744,660
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr  X:14,271,012...14,331,745
Ensembl chr  X:14,271,017...14,331,486
JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr15:28,521,287...28,575,046
Ensembl chr15:28,522,737...28,574,737
JBrowse link
G Spata7 spermatogenesis associated 7 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:5660490 (MGI:6194004|PMID:29899041)
Ensembl
RGD
PMID:29899041, PMID:21873635 GO_REF:0000107 MGI:6194004, RGD:13792537 NCBI chr 6:122,603,248...122,648,718
Ensembl chr 6:122,603,269...122,648,699
JBrowse link
photoreceptor proximal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep290 centrosomal protein 290 ISO (MGI:6194004|PMID:29899041) RGD PMID:29899041 MGI:6194004 NCBI chr 7:40,217,269...40,306,327
Ensembl chr 7:40,217,269...40,306,327
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20615
    cellular anatomical entity 20304
      ciliary transition zone 76
        MKS complex 15
        NPHP complex 0
        Y-shaped link 0
        central cylinder 0
        ciliary necklace 0
        photoreceptor connecting cilium + 47
Path 2
Term Annotations click to browse term
  cellular_component 20615
    cellular anatomical entity 20304
      cell projection 2549
        plasma membrane bounded cell projection 2478
          cilium 685
            ciliary transition zone 76
              MKS complex 15
              NPHP complex 0
              Y-shaped link 0
              central cylinder 0
              ciliary necklace 0
              photoreceptor connecting cilium + 47
paths to the root