Arl3 (ARF like GTPase 3) - Rat Genome Database

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Gene: Arl3 (ARF like GTPase 3) Ictidomys tridecemlineatus
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Symbol: Arl3
Name: ARF like GTPase 3 (Ensembl:ADP ribosylation factor like GTPase 3)
RGD ID: 12508867
Description: ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN intraciliary transport (ortholog); post-Golgi vesicle-mediated transport (ortholog); smoothened signaling pathway (ortholog); ASSOCIATED WITH autosomal recessive polycystic kidney disease (ortholog); desmoplastic/nodular medulloblastoma (ortholog); fundus dystrophy (ortholog); FOUND IN cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ADP ribosylation factor like GTPase 3; ADP ribosylation factor like GTPase 3, transcript variant X1; ADP ribosylation factor like GTPase 3, transcript variant X2; ADP-ribosylation factor-like protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721331,586,987 - 31,626,576 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366003,190,208 - 3,232,755 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366003,190,212 - 3,229,831 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Arl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721331,586,987 - 31,626,576 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366003,190,208 - 3,232,755 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366003,190,212 - 3,229,831 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810102,673,731 - 102,714,397 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10102,673,731 - 102,714,397 (-)EnsemblGRCh38hg38GRCh38
GRCh3710104,433,488 - 104,474,154 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610104,423,478 - 104,464,180 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410104,423,479 - 104,464,180NCBI
Celera1098,174,570 - 98,215,252 (-)NCBICelera
Cytogenetic Map10q24.32NCBI
HuRef1098,068,111 - 98,108,671 (-)NCBIHuRef
CHM1_110104,717,244 - 104,757,972 (-)NCBICHM1_1
T2T-CHM13v2.010103,559,565 - 103,600,213 (-)NCBIT2T-CHM13v2.0
Arl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391946,519,548 - 46,561,621 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1946,519,535 - 46,561,637 (-)EnsemblGRCm39 Ensembl
GRCm381946,531,109 - 46,573,182 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1946,531,096 - 46,573,198 (-)EnsemblGRCm38mm10GRCm38
MGSCv371946,605,599 - 46,647,575 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361946,584,420 - 46,626,396 (-)NCBIMGSCv36mm8
Celera1947,294,795 - 47,342,296 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1938.94NCBI
Arl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81255,342,078 - 255,388,087 (-)NCBIGRCr8
mRatBN7.21245,400,659 - 245,446,673 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,400,550 - 245,446,820 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1253,528,228 - 253,578,755 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01260,221,057 - 260,269,033 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01252,872,289 - 252,921,130 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01266,287,015 - 266,333,099 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1266,287,017 - 266,333,105 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01273,718,171 - 273,763,819 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41251,756,117 - 251,870,843 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11252,019,272 - 252,134,145 (-)NCBI
Celera1241,183,114 - 241,232,786 (-)NCBICelera
Cytogenetic Map1q54NCBI
Arl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554857,733,211 - 7,775,687 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554857,739,556 - 7,772,582 (+)NCBIChiLan1.0ChiLan1.0
ARL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28114,558,563 - 114,596,817 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110114,560,951 - 114,602,140 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01099,271,620 - 99,312,784 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110102,735,325 - 102,775,849 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10102,735,325 - 102,775,849 (-)Ensemblpanpan1.1panPan2
ARL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12815,152,762 - 15,189,043 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2815,142,485 - 15,188,903 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2815,324,644 - 15,360,949 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02815,626,577 - 15,662,907 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2815,616,285 - 15,662,673 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12815,170,930 - 15,207,246 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02815,210,729 - 15,247,018 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02815,342,783 - 15,379,100 (-)NCBIUU_Cfam_GSD_1.0
ARL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14113,665,270 - 113,707,591 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114113,668,375 - 113,699,583 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214123,606,457 - 123,618,545 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1995,703,648 - 95,737,785 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604856,815,977 - 56,860,402 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248312,037,023 - 2,078,220 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248312,041,241 - 2,077,801 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000014454   ⟹   ENSSTOP00000012948
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366003,190,208 - 3,232,755 (+)Ensembl
RefSeq Acc Id: XM_005333615   ⟹   XP_005333672
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721331,586,987 - 31,626,576 (+)NCBI
SpeTri2.0NW_0049366003,190,212 - 3,229,831 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021731841   ⟹   XP_021587516
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721331,587,371 - 31,626,576 (+)NCBI
SpeTri2.0NW_0049366003,190,505 - 3,229,831 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040273007   ⟹   XP_040128941
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721331,587,340 - 31,626,576 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005333672 (Get FASTA)   NCBI Sequence Viewer  
  XP_021587516 (Get FASTA)   NCBI Sequence Viewer  
  XP_040128941 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012948.3
GenBank Protein KAG3264166 (Get FASTA)   NCBI Sequence Viewer  
  KAG3264167 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005333672   ⟸   XM_005333615
- Peptide Label: isoform X2
- UniProtKB: I3MMY5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021587516   ⟸   XM_021731841
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040128941   ⟸   XM_040273007
- Peptide Label: isoform X3
Ensembl Acc Id: ENSSTOP00000012948   ⟸   ENSSTOT00000014454


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014453 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014454.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro ARL2/3 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase_ARF/SAR UniProtKB/TrEMBL
NCBI Gene Arl3 ENTREZGENE
PANTHER PTHR45697 UniProtKB/TrEMBL
Pfam Arf UniProtKB/TrEMBL
PRINTS SAR1GTPBP UniProtKB/TrEMBL
PROSITE ARF UniProtKB/TrEMBL
SMART ARF UniProtKB/TrEMBL
  SAR UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt I3MMY5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-09-25 Arl3  ARF like GTPase 3  Arl3  ADP ribosylation factor like GTPase 3  Symbol and/or name change 5135510 APPROVED