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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleosomal DNA binding
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Accession:GO:0031492 term browser browse the term
Definition:Binding to the DNA portion of a nucleosome.


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nucleosomal DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H1f0 H1.0 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr15:78,912,412...78,914,704
Ensembl chr15:78,912,650...78,914,704 		JBrowse link
G H1f1 H1.1 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,947,651...23,948,395
Ensembl chr13:23,947,649...23,948,389 		JBrowse link
G H1f10 H1.10 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr 6:87,957,403...87,958,464
Ensembl chr 6:87,957,403...87,958,619 		JBrowse link
G H1f2 H1.2 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,922,790...23,923,514
Ensembl chr13:23,922,791...23,924,350 		JBrowse link
G H1f3 H1.3 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,739,206...23,739,981
Ensembl chr13:23,737,436...23,744,860 		JBrowse link
G H1f4 H1.4 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,805,760...23,806,541
Ensembl chr13:23,804,612...23,806,541 		JBrowse link
G H1f5 H1.5 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr13:21,964,002...21,964,795
Ensembl chr13:21,964,053...21,964,795 		JBrowse link
G H1f6 H1.6 linker histone, cluster member enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,879,794...23,880,528
Ensembl chr13:23,879,797...23,880,708 		JBrowse link
G H1f8 H1.8 linker histone enables IDA
IBA		 (MGI:5559660|PMID:22868987) UniProt
GO_Central		 PMID:22868987 GO_REF:0000033 MGI:5559660 NCBI chr 6:115,921,892...115,927,203
Ensembl chr 6:115,921,899...115,927,197 		JBrowse link
G H1f9 H1.9 linker histone enables IBA GO_Central GO_REF:0000033 NCBI chr11:94,858,419...94,859,282
Ensembl chr11:94,858,419...94,859,282 		JBrowse link
G H2ab1 H2A.B variant histone 1 enables IBA GO_Central GO_REF:0000033 NCBI chr  X:115,924,454...115,924,801
Ensembl chr  X:115,924,454...115,924,801 		JBrowse link
G H2ab2 H2A.B variant histone 2 enables IBA GO_Central GO_REF:0000033 NCBI chr  X:115,590,875...115,591,222
Ensembl chr  X:115,590,875...115,591,222 		JBrowse link
G H2ab3 H2A.B variant histone 3 enables IBA GO_Central GO_REF:0000033 NCBI chr  X:119,222,279...119,222,923
Ensembl chr  X:119,222,445...119,222,792 		JBrowse link
G H2ac1 H2A clustered histone 1 enables IBA GO_Central GO_REF:0000033 NCBI chr13:24,118,420...24,118,896
Ensembl chr13:24,118,445...24,118,834 		JBrowse link
G H2ac10 H2A clustered histone 10 enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,718,045...23,718,548
Ensembl chr13:23,718,076...23,718,474 		JBrowse link
G H2ac11 H2A clustered histone 11 enables IBA GO_Central GO_REF:0000033 NCBI chr13:22,226,648...22,227,119
Ensembl chr13:22,226,630...22,227,114 		JBrowse link
G H2ac12 H2A clustered histone 12 enables IBA GO_Central GO_REF:0000033 NCBI chr13:22,219,292...22,219,813
Ensembl chr13:22,219,334...22,219,738 		JBrowse link
G H2ac13 H2A clustered histone 13 enables IBA GO_Central GO_REF:0000033 NCBI chr13:21,900,582...21,901,029
Ensembl chr13:21,900,592...21,900,984 		JBrowse link
G H2ac15 H2A clustered histone 15 enables IBA GO_Central GO_REF:0000033 NCBI chr13:21,937,547...21,938,082
Ensembl chr13:21,937,605...21,937,997 		JBrowse link
G H2ac19 H2A clustered histone 19 enables IBA GO_Central GO_REF:0000033 NCBI chr 3:96,147,065...96,147,638
Ensembl chr 3:96,147,065...96,147,592 		JBrowse link
G H2ac20 H2A clustered histone 20 enables IBA GO_Central GO_REF:0000033 NCBI chr 3:96,127,728...96,128,209
Ensembl chr 3:96,127,677...96,128,196 		JBrowse link
G H2ac21 H2A clustered histone 21 enables IBA GO_Central GO_REF:0000033 NCBI chr 3:96,127,201...96,127,634
Ensembl chr 3:96,127,181...96,127,624 		JBrowse link
G H2ac22 H2A clustered histone 22 enables IBA GO_Central GO_REF:0000033 NCBI chr13:21,970,944...21,971,418
Ensembl chr13:21,970,996...21,971,388 		JBrowse link
G H2ac23 H2A clustered histone 23 enables IBA GO_Central GO_REF:0000033 NCBI chr13:21,994,537...21,995,088
Ensembl chr13:21,994,635...21,995,114 		JBrowse link
G H2ac24 H2A clustered histone 24 enables IBA GO_Central GO_REF:0000033 NCBI chr13:22,017,194...22,017,645
Ensembl chr13:22,017,196...22,017,677 		JBrowse link
G H2ac25 H2A clustered histone 25 enables IBA GO_Central GO_REF:0000033 NCBI chr11:58,845,511...58,846,018
Ensembl chr11:58,845,511...58,847,656 		JBrowse link
G H2ac4 H2A clustered histone 4 enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,935,061...23,935,577
Ensembl chr13:23,935,109...23,935,581 		JBrowse link
G H2ac6 H2A clustered histone 6 enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,867,456...23,867,942
Ensembl chr13:23,865,450...23,867,931 		JBrowse link
G H2ac7 H2A clustered histone 7 enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,758,555...23,759,089
Ensembl chr13:23,758,555...23,759,126 		JBrowse link
G H2ac8 H2A clustered histone 8 enables IBA GO_Central GO_REF:0000033 NCBI chr13:23,754,837...23,755,394
Ensembl chr13:23,754,691...23,755,394 		JBrowse link
G H2aj H2J.A histone enables IBA GO_Central GO_REF:0000033 NCBI chr 6:136,785,246...136,787,072
Ensembl chr 6:136,785,242...136,787,072 		JBrowse link
G H2al1b H2A histone family member L1B enables IBA GO_Central GO_REF:0000033 NCBI chr  X:11,168,671...11,169,160
Ensembl chr  X:11,168,671...11,169,165 		JBrowse link
G H2al1e H2A histone family member L1E enables IBA GO_Central GO_REF:0000033 NCBI chr  X:11,178,173...11,178,666
Ensembl chr  X:11,178,173...11,178,666 		JBrowse link
G H2al1f H2A histone family member L1F enables IBA GO_Central GO_REF:0000033 NCBI chr  X:11,181,397...11,181,714
Ensembl chr  X:11,181,397...11,181,714 		JBrowse link
G H2al1j H2A histone family member L1J enables IBA GO_Central GO_REF:0000033 NCBI chr  X:11,194,061...11,194,390
Ensembl chr  X:11,194,061...11,194,390 		JBrowse link
G H2al1k H2A histone family member L1K enables IBA GO_Central GO_REF:0000033 NCBI chr  X:9,216,838...9,217,376
Ensembl chr  X:9,216,866...9,217,375 		JBrowse link
G H2al1m H2A histone family member L1M enables IBA GO_Central GO_REF:0000033 NCBI chr  X:9,150,003...9,150,527
Ensembl chr  X:9,150,003...9,150,537 		JBrowse link
G H2al1n H2A histone family member L1N enables IBA GO_Central GO_REF:0000033 NCBI chr  X:14,077,387...14,077,896
Ensembl chr  X:14,077,387...14,077,900 		JBrowse link
G H2al1o H2A histone family member L1O enables IBA GO_Central GO_REF:0000033 NCBI chr  X:9,438,199...9,438,630
Ensembl chr  X:9,438,140...9,438,648 		JBrowse link
G H2al2a H2A histone family member L2A enables IBA GO_Central GO_REF:0000033 NCBI chr 2:18,001,228...18,001,769
Ensembl chr 2:18,001,228...18,001,769 		JBrowse link
G H2al2b H2A histone family member L2B enables IBA GO_Central GO_REF:0000033 NCBI chr  Y:2,720,339...2,720,674
Ensembl chr  Y:2,720,339...2,720,674 		JBrowse link
G H2al3 H2A histone family member L3 enables IBA GO_Central GO_REF:0000033 NCBI chr  X:9,715,942...9,716,491
Ensembl chr  X:9,715,942...9,716,494 		JBrowse link
G H2ap H2A.P histone enables IBA GO_Central GO_REF:0000033 NCBI chr  X:9,713,186...9,713,739
Ensembl chr  X:9,713,167...9,713,747 		JBrowse link
G H2ax H2A.X variant histone enables IBA GO_Central GO_REF:0000033 NCBI chr 9:44,246,012...44,247,374
Ensembl chr 9:44,245,991...44,247,374 		JBrowse link
G H2az1 H2A.Z variant histone 1 enables ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 3:137,570,248...137,572,683
Ensembl chr 3:137,570,248...137,572,683 		JBrowse link
G H2az2 H2A.Z histone variant 2 enables IBA GO_Central GO_REF:0000033 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G H3f3a H3.3 histone A enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:180,630,125...180,641,127
Ensembl chr 1:180,628,397...180,641,508 		JBrowse link
G H3f3b H3.3 histone B enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:115,912,787...115,921,313
Ensembl chr11:115,912,738...115,918,788 		JBrowse link
G H3f5 H3.5 histone enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:94,481,887...94,488,556
Ensembl chr 4:94,487,622...94,488,032 		JBrowse link
G Hmga2 high mobility group AT-hook 2 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:120,197,173...120,312,374
Ensembl chr10:120,197,180...120,312,374 		JBrowse link
G Hmgn1 high mobility group nucleosomal binding domain 1 enables IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr16:95,922,788...95,928,925
Ensembl chr16:95,921,818...95,928,929 		JBrowse link
G Hmgn3 high mobility group nucleosomal binding domain 3 enables IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 9:82,991,995...83,029,411
Ensembl chr 9:82,992,001...83,028,738 		JBrowse link
G Hmgn5 high-mobility group nucleosome binding domain 5 enables IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr  X:108,048,143...108,056,986
Ensembl chr  X:108,048,140...108,057,010 		JBrowse link
G Macroh2a1 macroH2A.1 histone enables IDA
ISO
IBA		 (MGI:5619474|PMID:18936163) UniProt
MGI
GO_Central		 PMID:18936163 GO_REF:0000033 GO_REF:0000119 MGI:4834177 MGI:5619474 NCBI chr13:56,221,435...56,283,439
Ensembl chr13:56,221,432...56,284,174 		JBrowse link
G Macroh2a2 macroH2A.2 histone enables IBA GO_Central GO_REF:0000033 NCBI chr10:61,574,419...61,620,383
Ensembl chr10:61,574,444...61,619,926 		JBrowse link
G Rcc1 regulator of chromosome condensation 1 enables ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:132,059,230...132,073,061
Ensembl chr 4:132,059,230...132,080,916 		JBrowse link
G Vrk1 vaccinia related kinase 1 enables ISO (PMID:35390161) UniProt PMID:35390161 NCBI chr12:105,976,398...106,044,578
Ensembl chr12:105,976,487...106,043,685
Ensembl chr12:105,976,487...106,043,685 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 28831
    binding 17528
      protein-containing complex binding 2202
        chromatin binding 713
          chromatin DNA binding 155
            nucleosomal DNA binding 57
Path 2
Term Annotations click to browse term
  molecular_function 28831
    binding 17528
      organic cyclic compound binding 5849
        nucleic acid binding 3743
          DNA binding 2363
            chromatin DNA binding 155
              nucleosomal DNA binding 57
paths to the root