.
IMP biosynthetic process - Ontology Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:IMP biosynthetic process
go back to main search page
Accession:GO:0006188 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate.
Synonyms:exact_synonym: IMP anabolism;   IMP biosynthesis;   IMP formation;   IMP synthesis

 Loading Annotations... 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
X

show annotations for term's descendants           Sort by:
IMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd1 adenosine monophosphate deaminase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:193,287,219...193,308,446
Ensembl chr 2:190,598,700...190,619,938 		JBrowse link
G Ampd2 adenosine monophosphate deaminase 2 acts_upstream_of_or_within
involved_in 		ISO
IBA 		SGD:S000004498 (PMID:23911318)
MGI:5490144 (PMID:23911318)
GO_REF:0000033 		RGD
GO_Central		 PMID:23911318 GO_REF:0000033 NCBI chr 2:198,395,767...198,408,514
Ensembl chr 2:195,707,610...195,720,271 		JBrowse link
G Ampd3 adenosine monophosphate deaminase 3 involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:5529271 (PMID:23078545), (PMID:23542464), (PMID:23911318), (PMID:9133604) 		GO_Central
RGD		 PMID:9133604 PMID:23078545 PMID:23542464 PMID:23911318 GO_REF:0000033 NCBI chr 1:174,319,526...174,364,605
Ensembl chr 1:164,885,320...164,929,887 		JBrowse link
'de novo' IMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adsl adenylosuccinate lyase involved_in IEA
ISO 		GO_REF:0000041
GO_REF:0000107
(PMID:6480832) 		UniProt
Ensembl
RGD		 PMID:6480832 GO_REF:0000041 GO_REF:0000107 NCBI chr 7:114,359,440...114,383,618
Ensembl chr 7:112,479,271...112,503,760 		JBrowse link
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase involved_in IDA
IEA
ISO
IBA 		GO_REF:0000107
(PMID:26144885)
GO_REF:0000033
(PMID:26588576)
GO_REF:0000041 		Ensembl
RGD
GO_Central
UniProt		 PMID:26144885 PMID:26588576 PMID:9332377 GO_REF:0000033 GO_REF:0000041 GO_REF:0000107, RGD:70804 NCBI chr 9:80,614,311...80,634,360
Ensembl chr 9:73,164,846...73,184,889 		JBrowse link
G ENSRNOG00000066810 involved_in IEA
IBA 		GO_REF:0000041
GO_REF:0000033 		UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 Ensembl chr 1:52,389,359...52,390,972 JBrowse link
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase involved_in IEA
ISO 		GO_REF:0000041
GO_REF:0000002
GO_REF:0000107
GO_REF:0000104
(PMID:8299947)
(PMID:2183217) 		UniProt
InterPro
Ensembl
RGD		 PMID:2183217 PMID:8299947 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 NCBI chr11:44,351,841...44,377,086
Ensembl chr11:30,865,889...30,891,125 		JBrowse link
G LOC100359876 multifunctional protein ADE2-like involved_in IEA
IBA 		GO_REF:0000041
GO_REF:0000002
GO_REF:0000033 		UniProt
InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 NCBI chr  X:6,635,011...6,636,484
Ensembl chr  X:4,032,895...4,033,896 		JBrowse link
G Paics phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase involved_in IEA
IBA
ISO 		GO_REF:0000041
GO_REF:0000002
GO_REF:0000033
(PMID:27590927) 		UniProt
InterPro
GO_Central
RGD		 PMID:27590927 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 NCBI chr14:31,553,355...31,586,843
Ensembl chr14:31,173,541...31,232,635 		JBrowse link
G Pfas phosphoribosylformylglycinamidine synthase involved_in IEA
ISO 		GO_REF:0000041
GO_REF:0000107
GO_REF:0000002
(PMID:27590927) 		UniProt
Ensembl
InterPro
RGD		 PMID:27590927 GO_REF:0000002 GO_REF:0000041 GO_REF:0000107 NCBI chr10:54,189,157...54,210,685
Ensembl chr10:53,691,626...53,708,420 		JBrowse link
G Ppat phosphoribosyl pyrophosphate amidotransferase involved_in IEA
ISO 		GO_REF:0000041
GO_REF:0000107
(PMID:6327016) 		UniProt
Ensembl
RGD		 PMID:6327016 GO_REF:0000041 GO_REF:0000107 NCBI chr14:31,570,010...31,604,410
Ensembl chr14:31,216,165...31,250,144 		JBrowse link
IMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd1 adenosine monophosphate deaminase 1 involved_in IEA
ISO 		GO_REF:0000041
MGI:6157956 (PMID:27896074)
GO_REF:0000002
GO_REF:0000107 		UniProt
RGD
InterPro
Ensembl		 PMID:27896074 GO_REF:0000002 GO_REF:0000041 GO_REF:0000107 NCBI chr 2:193,287,219...193,308,446
Ensembl chr 2:190,598,700...190,619,938 		JBrowse link
G Ampd2 adenosine monophosphate deaminase 2 involved_in IEA
ISO 		GO_REF:0000041
MGI:5490144 (PMID:22212473)
GO_REF:0000002 		UniProt
RGD
InterPro		 PMID:22212473 GO_REF:0000002 GO_REF:0000041 NCBI chr 2:198,395,767...198,408,514
Ensembl chr 2:195,707,610...195,720,271 		JBrowse link
G Ampd3 adenosine monophosphate deaminase 3 involved_in IEA
ISO 		GO_REF:0000041
(PMID:24940686)
GO_REF:0000002 		UniProt
RGD
InterPro		 PMID:24940686 GO_REF:0000002 GO_REF:0000041 NCBI chr 1:174,319,526...174,364,605
Ensembl chr 1:164,885,320...164,929,887 		JBrowse link
G Aprt adenine phosphoribosyl transferase involved_in ISO MGI:2654615 (PMID:9776749) RGD PMID:9776749 NCBI chr19:67,534,737...67,537,027
Ensembl chr19:50,626,202...50,628,431 		JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 involved_in IEA
IBA
ISO 		GO_REF:0000041
GO_REF:0000033
MGI:1857299 (PMID:10037486), (PMID:8878108)
GO_REF:0000107 		UniProt
GO_Central
RGD
Ensembl		 PMID:8878108 PMID:10037486 GO_REF:0000033 GO_REF:0000041 GO_REF:0000107 NCBI chr  X:137,655,744...137,687,718
Ensembl chr  X:132,736,096...132,768,154 		JBrowse link
G Prtfdc1 phosphoribosyl transferase domain containing 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr17:88,457,872...88,563,109
Ensembl chr17:83,548,803...83,655,179 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    cellular process 19557
      metabolic process 12206
        purine-containing compound metabolic process 617
          purine nucleotide metabolic process 480
            purine ribonucleotide metabolic process 385
              purine ribonucleotide biosynthetic process 144
                IMP biosynthetic process 14
                  'de novo' IMP biosynthetic process 8
                  IMP salvage 6
Path 2
Term Annotations click to browse term
  biological_process 20567
    cellular process 19557
      metabolic process 12206
        primary metabolic process 10763
          nucleobase-containing compound metabolic process 5900
            nucleobase-containing small molecule metabolic process 733
              nucleoside phosphate metabolic process 699
                nucleotide metabolic process 540
                  purine nucleotide metabolic process 480
                    purine nucleotide biosynthetic process 181
                      purine ribonucleotide biosynthetic process 144
                        IMP biosynthetic process 14
                          'de novo' IMP biosynthetic process 8
                          IMP salvage 6
paths to the root