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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:glycogen
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Accession:CHEBI:28087 term browser browse the term
Definition:A polydisperse, highly branched glucan composed of chains of D-glucopyranose residues in alpha(1->4) glycosidic linkage, joined together by alpha(1->6) glycosidic linkages. A small number of alpha(1->3) glycosidic linkages and some cumulative alpha(1->6) links also may occur. The branches in glycogen typically contain 8 to 12 glucose residues.
Synonyms:related_synonym: WURCS=2.0/1,4,3/[a2122h-1a_1-5]/1-1-1-1/a4-b1_b4-c1_b6-d1;   animal starch;   liver starch
 alt_id: CHEBI:24379;   CHEBI:5466
 xref: CAS:9005-79-2;   GlyGen:G99991IU;   GlyTouCan:G99991IU;   HMDB:HMDB0000757;   KEGG:C00182
 xref_mesh: MESH:D006003
 xref: MetaCyc:CPD0-971;   Wikipedia:Glycogen


show annotations for term's descendants           Sort by:
glycogen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agl amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase affects metabolic processing ISO AGL protein affects the metabolism of Glycogen CTD PMID:24700805 NCBI chr 2:204,705,053...204,760,966
Ensembl chr 2:204,705,053...204,760,828 		JBrowse link
G Dusp8 dual specificity phosphatase 8 multiple interactions ISO [DUSP8 protein affects the susceptibility to Dietary Fats] which affects the abundance of Glycogen CTD PMID:32780722 NCBI chr 1:197,167,392...197,184,285
Ensembl chr 1:197,169,422...197,182,921 		JBrowse link
G Htr2b 5-hydroxytryptamine receptor 2B multiple interactions ISO [Fluoxetine results in increased expression of and results in increased activity of HTR2B protein] which results in increased metabolism of Glycogen CTD PMID:11930908 NCBI chr 9:86,735,793...86,756,638
Ensembl chr 9:86,742,102...86,755,108 		JBrowse link
G Ins1 insulin 1 increases chemical synthesis
increases abundance
multiple interactions		 EXP INS1 protein results in increased chemical synthesis of Glycogen
INS1 protein results in increased abundance of Glycogen
Diethylhexyl Phthalate inhibits the reaction [INS1 protein results in increased abundance of Glycogen]; mono-(2-ethylhexyl)phthalate inhibits the reaction [INS1 protein results in increased abundance of Glycogen]; Rosiglitazone inhibits the reaction [INS1 protein results in increased abundance of Glycogen]		 CTD PMID:1847587 PMID:19211718 PMID:28526321 NCBI chr 1:251,244,973...251,245,540
Ensembl chr 1:251,244,973...251,245,536 		JBrowse link
G Ins2 insulin 2 multiple interactions
increases chemical synthesis
increases abundance		 ISO Estradiol promotes the reaction [INS protein results in increased chemical synthesis of Glycogen]; Glucose inhibits the reaction [INS protein results in increased chemical synthesis of Glycogen]; mono-(2-ethylhexyl)phthalate inhibits the reaction [INS protein results in increased abundance of Glycogen]; RBP4 protein promotes the reaction [mono-(2-ethylhexyl)phthalate inhibits the reaction [INS protein results in increased abundance of Glycogen]]; Testosterone promotes the reaction [INS protein results in increased chemical synthesis of Glycogen] CTD PMID:15864539 PMID:21632903 PMID:31228551 NCBI chr 1:197,843,277...197,992,522
Ensembl chr 1:197,843,281...197,864,775 		JBrowse link
G Nfe2l2 NFE2 like bZIP transcription factor 2 multiple interactions ISO NFE2L2 protein affects the reaction [Streptozocin results in decreased abundance of Glycogen] CTD PMID:20086057 NCBI chr 3:60,594,239...60,621,712
Ensembl chr 3:60,594,242...60,621,737 		JBrowse link
G Nono non-POU domain containing, octamer-binding decreases abundance ISO NONO gene mutant form results in decreased abundance of Glycogen CTD PMID:29358041 NCBI chr  X:66,554,131...66,571,992
Ensembl chr  X:66,554,098...66,571,952 		JBrowse link
G Nr1i3 nuclear receptor subfamily 1, group I, member 3 decreases abundance ISO NR1I3 mRNA results in decreased abundance of Glycogen CTD PMID:32428594 NCBI chr13:83,632,940...83,638,193
Ensembl chr13:83,632,899...83,637,906 		JBrowse link
G Rbp4 retinol binding protein 4 multiple interactions ISO RBP4 protein promotes the reaction [mono-(2-ethylhexyl)phthalate inhibits the reaction [INS protein results in increased abundance of Glycogen]] CTD PMID:31228551 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase multiple interactions ISO SRC protein promotes the reaction [Tetrachlorodibenzodioxin results in decreased abundance of Glycogen] CTD PMID:11882352 NCBI chr 3:146,091,969...146,139,492
Ensembl chr 3:146,091,841...146,139,476 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19808
    role 19784
      biological role 19782
        biochemical role 19496
          metabolite 19484
            eukaryotic metabolite 19307
              fungal metabolite 17857
                Saccharomyces cerevisiae metabolite 17290
                  glycogen 10
Path 2
Term Annotations click to browse term
  CHEBI ontology 19808
    subatomic particle 19806
      composite particle 19806
        hadron 19806
          baryon 19806
            nucleon 19806
              atomic nucleus 19806
                atom 19806
                  main group element atom 19756
                    p-block element atom 19756
                      carbon group element atom 19705
                        carbon atom 19702
                          organic molecular entity 19702
                            heteroorganic entity 19460
                              organochalcogen compound 19224
                                organooxygen compound 19141
                                  carbohydrates and carbohydrate derivatives 15270
                                    carbohydrate 15270
                                      polysaccharide 8202
                                        homopolysaccharide 5801
                                          glucan 4987
                                            glycogens 10
                                              glycogen 10
paths to the root