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ONTOLOGY REPORT - ANNOTATIONS

Term:transcription initiation at RNA polymerase II promoter
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Accession:GO:0006367 term browser browse the term
Definition:A transcription initiation process that takes place at a RNA polymerase II gene promoter. Messenger RNAs (mRNA) genes, as well as some non-coding RNAs, are transcribed by RNA polymerase II.
Comment:Note that promoter clearance is represented as a separate step, not part_of either initiation or elongation.
Synonyms:exact_synonym: transcription initiation from Pol II promoter;   transcription initiation from RNA polymerase II promoter


show annotations for term's descendants           Sort by:
transcription initiation at RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07015889.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr14:78,776,373...78,776,700 JBrowse link
G Brf2 BRF2, RNA polymerase III transcription initiation factor subunit involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr16:64,928,334...64,933,057
Ensembl chr16:64,928,300...64,933,059 		JBrowse link
G Ccnh cyclin H involved_in IEA
ISO		 GO_REF:0000107
(PMID:7533895), (PMID:8692841)		 Ensembl
RGD		 PMID:7533895 PMID:8692841 GO_REF:0000107 NCBI chr 2:15,835,064...15,855,648
Ensembl chr 2:15,834,833...15,855,819 		JBrowse link
G Cdk7 cyclin-dependent kinase 7 involved_in IEA
ISO		 GO_REF:0000107
(PMID:7533895), (PMID:8692841)		 Ensembl
RGD		 PMID:7533895 PMID:8692841 GO_REF:0000107 NCBI chr 2:31,840,558...31,865,422
Ensembl chr 2:31,840,558...31,865,383 		JBrowse link
G Eloa elongin A involved_in ISO
IEA		 (PMID:7660122)
GO_REF:0000107		 RGD
Ensembl		 PMID:7660122 GO_REF:0000107 NCBI chr 5:148,231,600...148,246,760
Ensembl chr 5:148,231,596...148,246,765 		JBrowse link
G Elob elongin B involved_in ISO (PMID:7660122) RGD PMID:7660122 NCBI chr10:12,848,830...12,853,897
Ensembl chr10:12,848,827...12,853,635 		JBrowse link
G Eloc elongin C involved_in ISO (PMID:7660122) RGD PMID:7660122 NCBI chr 5:2,661,527...2,677,893
Ensembl chr 5:2,661,724...2,677,890 		JBrowse link
G ENSRNOG00000064241 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 5:97,975,779...97,977,813 JBrowse link
G ENSRNOG00000067613 involved_in IEA GO_REF:0000002
GO_REF:0000118		 InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 Ensembl chr17:14,611,967...14,612,710 JBrowse link
G ENSRNOG00000067796 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr15:22,674,189...22,674,524 JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IEA
ISO		 GO_REF:0000107
(PMID:8692841)		 Ensembl
RGD		 PMID:8692841 GO_REF:0000107 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102 		JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA
ISO
IBA		 GO_REF:0000002
(PMID:8692841)
GO_REF:0000118
GO_REF:0000033		 InterPro
RGD
TreeGrafter
GO_Central		 PMID:8692841 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329 		JBrowse link
G Gtf2a1 general transcription factor 2A subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:110,488,891...110,521,502
Ensembl chr 6:110,488,931...110,521,511 		JBrowse link
G Gtf2a1l general transcription factor 2A subunit 1 like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:5,752,814...5,834,797
Ensembl chr 6:5,752,823...5,836,472 		JBrowse link
G Gtf2a2 general transcription factor 2A subunit 2 involved_in ISO
IEA		 (PMID:7958899)
GO_REF:0000002		 RGD
InterPro		 PMID:7958899 GO_REF:0000002 NCBI chr 8:70,662,447...70,675,576
Ensembl chr 8:70,662,428...70,675,569 		JBrowse link
G Gtf2b general transcription factor IIB involved_in ISO
IBA
ISS		 (PMID:12931194), (PMID:3029109), (PMID:9420329)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:3029109 PMID:9420329 PMID:12931194 GO_REF:0000024 GO_REF:0000033 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651 		JBrowse link
G Gtf2e2 general transcription factor IIE subunit 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:58,399,307...58,449,467
Ensembl chr16:58,399,107...58,449,371 		JBrowse link
G Gtf2f1 general transcription factor IIF subunit 1 involved_in ISO
IEA
IBA		 (PMID:15351637), (PMID:7929273)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000002		 RGD
TreeGrafter
GO_Central
InterPro		 PMID:7929273 PMID:15351637 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 9:1,844,027...1,853,455
Ensembl chr 9:1,843,901...1,853,423 		JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 involved_in IDA
IBA
IEA
ISO		 PMID:7929273
GO_REF:0000033
GO_REF:0000117
(PMID:15351637)		 GO_Central
UniProt
RGD		 PMID:15351637 PMID:7929273 GO_REF:0000033 GO_REF:0000117, RGD:9681417 NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253 		JBrowse link
G Gtf2h1 general transcription factor IIH subunit 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:8692841)		 Ensembl
RGD		 PMID:8692841 GO_REF:0000107 NCBI chr 1:97,321,417...97,349,455
Ensembl chr 1:97,321,394...97,349,455 		JBrowse link
G Gtf2h2 general transcription factor IIH subunit 2 involved_in ISO (PMID:10924514) RGD PMID:10924514 NCBI chr 2:31,623,752...31,652,697
Ensembl chr 2:31,624,678...31,652,592 		JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939 		JBrowse link
G LOC120103497 general transcription factor IIH subunit 5-like involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 6:27,109,209...27,114,478
Ensembl chr 6:27,111,331...27,111,546 		JBrowse link
G Maz MYC associated zinc finger protein involved_in ISO (PMID:1502157) RGD PMID:1502157 NCBI chr 1:181,629,742...181,635,193
Ensembl chr 1:181,629,729...181,650,408 		JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase involved_in IEA
ISO		 GO_REF:0000107
(PMID:8692841)		 Ensembl
RGD		 PMID:8692841 GO_REF:0000107 NCBI chr 6:91,814,703...91,971,945
Ensembl chr 6:91,814,749...91,970,744 		JBrowse link
G Polr2d RNA polymerase II subunit D involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:23,418,097...23,425,228
Ensembl chr18:23,418,097...23,425,228 		JBrowse link
G Polr2g RNA polymerase II subunit G involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:205,689,160...205,692,537
Ensembl chr 1:205,689,160...205,692,686 		JBrowse link
G Polr2i RNA polymerase II subunit I involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:85,483,515...85,484,952
Ensembl chr 1:85,483,515...85,484,952 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO UniProtKB:Q60544 (PMID:17996705), (PMID:25412659) RGD PMID:17996705 PMID:25412659 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO
IBA		 (PMID:9603525)
GO_REF:0000033		 RGD
GO_Central		 PMID:9603525 GO_REF:0000033 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376 		JBrowse link
G Taf12 TATA-box binding protein associated factor 12 involved_in ISO (PMID:9603525) RGD PMID:9603525 NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849 		JBrowse link
G Taf2 TATA-box binding protein associated factor 2 involved_in ISO
IBA		 (PMID:10409744), (PMID:9418870)
GO_REF:0000033		 RGD
GO_Central		 PMID:9418870 PMID:10409744 GO_REF:0000033 NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616 		JBrowse link
G Taf4 TATA-box binding protein associated factor 4 involved_in ISO
IBA		 (PMID:12771217), (PMID:9603525)
GO_REF:0000033		 RGD
GO_Central		 PMID:9603525 PMID:12771217 GO_REF:0000033 NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356 		JBrowse link
G Taf4b TATA-box binding protein associated factor 4b involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:5,952,737...6,086,408
Ensembl chr18:5,952,769...6,068,307 		JBrowse link
G Taf5 TATA-box binding protein associated factor 5 involved_in ISO
IBA		 (PMID:9045704), (PMID:9603525)
GO_REF:0000033		 RGD
GO_Central		 PMID:9045704 PMID:9603525 GO_REF:0000033 NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914 		JBrowse link
G Taf6 TATA-box binding protein associated factor 6 involved_in ISO (PMID:15328371), (PMID:9603525) RGD PMID:9603525 PMID:15328371 NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247 		JBrowse link
G Taf7 TATA-box binding protein associated factor 7 involved_in ISO (PMID:16407123), (PMID:9603525) RGD PMID:9603525 PMID:16407123 NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134 		JBrowse link
G Taf8 TATA-box binding protein associated factor 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717 		JBrowse link
G Taf8l1 TATA-box binding protein associated factor 8 like 1 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:99,293,907...99,295,840
Ensembl chr 6:99,294,126...99,295,052 		JBrowse link
negative regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:8006019) RGD PMID:8006019 NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Thra thyroid hormone receptor alpha involved_in ISO
IEA		 (PMID:8524305)
GO_REF:0000107		 RGD
Ensembl		 PMID:8524305 GO_REF:0000107 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936 		JBrowse link
negative regulation of transcription initiation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnbip1 catenin, beta-interacting protein 1 involved_in ISO (MGI:4821083|PMID:11751639) RGD PMID:11751639 MGI:4821083 NCBI chr 5:159,961,961...160,010,942
Ensembl chr 5:159,961,928...160,010,939 		JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 involved_in ISO (PMID:10692439) RGD PMID:10692439 NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO (PMID:29203640) RGD PMID:29203640 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G Pcid2 PCI domain containing 2 involved_in ISO (MGI:6106288|PMID:29138493) RGD PMID:29138493 MGI:6106288 NCBI chr16:76,423,245...76,448,712
Ensembl chr16:76,423,245...76,448,712 		JBrowse link
G Zfp451 zinc finger protein 451 involved_in ISO
IBA		 (PMID:24324267)
GO_REF:0000033		 RGD
GO_Central		 PMID:24324267 GO_REF:0000033 NCBI chr 9:35,985,441...36,040,991
Ensembl chr 9:35,985,443...36,040,652 		JBrowse link
G Zfp473 zinc finger protein 473 IMP RGD PMID:12748187 RGD:1299608 NCBI chr 1:95,222,683...95,243,328
Ensembl chr 1:95,223,433...95,243,325 		JBrowse link
positive regulation of gene expression via chromosomal CpG island demethylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase involved_in ISO (PMID:21496894) RGD PMID:21496894 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972 		JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:21496894)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:21496894 GO_REF:0000024 GO_REF:0000107 NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785 		JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5285126|PMID:21496894)		 UniProt
RGD		 PMID:21496894 GO_REF:0000024 MGI:5285126 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390 		JBrowse link
G Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 involved_in ISO (PMID:21496894) RGD PMID:21496894 NCBI chr 9:12,564,955...12,578,461
Ensembl chr 9:12,564,920...12,578,458 		JBrowse link
G Egr1 early growth response 1 involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:Q3URK3 (MGI:6362262|PMID:31467272)		 Ensembl
RGD		 PMID:31467272 GO_REF:0000107 MGI:6362262 NCBI chr18:26,462,967...26,466,766
Ensembl chr18:26,462,981...26,466,766 		JBrowse link
G Ftx FTX transcript, XIST regulator acts_upstream_of_or_within ISO (PMID:21118898) RGD PMID:21118898 NCBI chr  X:68,588,349...68,630,338 JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase involved_in IEA
ISO		 GO_REF:0000107
(PMID:27251462)		 Ensembl
RGD		 PMID:27251462 GO_REF:0000107 NCBI chr 4:146,474,701...146,481,959
Ensembl chr 4:146,474,750...146,484,766 		JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:P08046 (MGI:3844762|PMID:19372391), (MGI:5285126|PMID:21496894), (MGI:6362262|PMID:31467272)
(PMID:21496894)		 Ensembl
RGD		 PMID:19372391 PMID:21496894 PMID:31467272 GO_REF:0000107 MGI:3844762 MGI:5285126 MGI:6362262 NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052 		JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:24315485)		 Ensembl
RGD		 PMID:24315485 GO_REF:0000107 NCBI chr 2:221,988,645...222,072,813
Ensembl chr 2:221,988,645...222,072,534 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (PMID:20961378) RGD PMID:20961378 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110 		JBrowse link
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor acts_upstream_of_or_within ISO (PMID:8215422) RGD PMID:8215422 NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568 		JBrowse link
G Cand1 cullin-associated and neddylation-dissociated 1 involved_in IDA PMID:10567521 UniProt PMID:10567521 RGD:8553447 NCBI chr 7:54,681,114...54,719,002
Ensembl chr 7:54,680,900...54,718,993 		JBrowse link
G Creb1 cAMP responsive element binding protein 1 IMP RGD PMID:16891311 RGD:1625706 NCBI chr 9:65,903,511...65,972,562
Ensembl chr 9:65,903,547...65,970,816 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158690 (PMID:21245044) RGD PMID:21245044 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Psmc6 proteasome 26S subunit, ATPase 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:18,542,585...18,564,057
Ensembl chr15:18,542,563...18,564,055 		JBrowse link
G Tp53 tumor protein p53 involved_in ISO
IEA		 (PMID:24289924)
GO_REF:0000107		 RGD
Ensembl		 PMID:24289924 GO_REF:0000107 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within ISO (PMID:19056892) RGD PMID:19056892 NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892 		JBrowse link
positive regulation of transcription initiation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx36 DEAH-box helicase 36 involved_in ISS
ISO		 GO_REF:0000024
(PMID:21993297)		 UniProt
RGD		 PMID:21993297 GO_REF:0000024 NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within ISO (PMID:22323595) RGD PMID:22323595 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within ISO MGI:1932102|MGI:99135 (PMID:22323595) RGD PMID:22323595 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587 		JBrowse link
G Gtf2a1 general transcription factor 2A subunit 1 involved_in ISO (PMID:11030333) RGD PMID:11030333 NCBI chr 6:110,488,891...110,521,502
Ensembl chr 6:110,488,931...110,521,511 		JBrowse link
G Gtf2a2 general transcription factor 2A subunit 2 involved_in ISO (PMID:11030333) RGD PMID:11030333 NCBI chr 8:70,662,447...70,675,576
Ensembl chr 8:70,662,428...70,675,569 		JBrowse link
G Hnf1a HNF1 homeobox A involved_in ISO UniProtKB:P35680 (PMID:15355349) RGD PMID:15355349 NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104 		JBrowse link
G Hnf1b HNF1 homeobox B involved_in ISO
IEA		 (PMID:15355349)
GO_REF:0000107		 RGD
Ensembl		 PMID:15355349 GO_REF:0000107 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888 		JBrowse link
G Kat8 lysine acetyltransferase 8 involved_in ISO
ISS		 (PMID:33657400)
GO_REF:0000024		 RGD
UniProt		 PMID:33657400 GO_REF:0000024 NCBI chr 1:182,524,355...182,536,638
Ensembl chr 1:182,515,327...182,536,633 		JBrowse link
G LOC103693281 activated RNA polymerase II transcriptional coactivator p15 pseudogene involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:12,858,465...12,858,878
Ensembl chr15:12,858,465...12,858,845
Ensembl chr15:12,858,465...12,858,845 		JBrowse link
G Med1 mediator complex subunit 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:12218053), (PMID:16314496)		 UniProt
RGD		 PMID:12218053 PMID:16314496 GO_REF:0000024 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Med12 mediator complex subunit 12 involved_in ISO (PMID:12218053) RGD PMID:12218053 NCBI chr  X:66,404,807...66,427,775
Ensembl chr  X:66,404,760...66,428,387 		JBrowse link
G Med13 mediator complex subunit 13 involved_in ISO (PMID:12218053) RGD PMID:12218053 NCBI chr10:71,086,978...71,176,535
Ensembl chr10:71,090,516...71,177,242 		JBrowse link
G Med14 mediator complex subunit 14 involved_in ISO (PMID:12218053) RGD PMID:12218053 NCBI chr  X:10,036,749...10,127,910
Ensembl chr  X:10,036,805...10,126,240 		JBrowse link
G Med16 mediator complex subunit 16 involved_in ISO (PMID:12218053) RGD PMID:12218053 NCBI chr 7:9,798,641...9,811,172
Ensembl chr 7:9,798,668...9,811,172 		JBrowse link
G Med17 mediator complex subunit 17 involved_in ISO (PMID:12218053) RGD PMID:12218053 NCBI chr 8:12,101,594...12,120,592
Ensembl chr 8:12,101,594...12,120,592 		JBrowse link
G Med24 mediator complex subunit 24 involved_in ISO
IBA
IEA		 (PMID:12218053)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:12218053 GO_REF:0000033 GO_REF:0000107 NCBI chr10:83,664,609...83,702,315
Ensembl chr10:83,664,609...83,690,123 		JBrowse link
G Med30 mediator complex subunit 30 involved_in ISO (PMID:12218053) RGD PMID:12218053 NCBI chr 7:84,004,735...84,026,474
Ensembl chr 7:84,004,722...84,026,595 		JBrowse link
G Med4 mediator complex subunit 4 involved_in ISO
IEA		 (PMID:12218053)
GO_REF:0000107		 RGD
Ensembl		 PMID:12218053 GO_REF:0000107 NCBI chr15:48,696,542...48,706,818
Ensembl chr15:48,696,511...48,706,820 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISO (MGI:6377809|PMID:26691508) RGD PMID:26691508 MGI:6377809 NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:16322095)		 Ensembl
RGD		 PMID:16322095 GO_REF:0000107 NCBI chr 2:224,016,214...224,132,135
Ensembl chr 2:224,016,214...224,110,404 		JBrowse link
G Nfkbia NFKB inhibitor alpha involved_in ISO (PMID:16322095) RGD PMID:16322095 NCBI chr 6:72,858,713...72,861,941
Ensembl chr 6:72,858,712...72,861,941 		JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in IEA
ISO		 GO_REF:0000107
(MGI:83559|PMID:8887666)		 Ensembl
RGD		 PMID:8887666 GO_REF:0000107 MGI:83559 NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934 		JBrowse link
G Paxip1 PAX interacting protein 1 involved_in ISO
IBA		 (PMID:17925232)
GO_REF:0000033
(MGI:4354659|PMID:19583951), (MGI:4821506|PMID:20671152)		 RGD
GO_Central		 PMID:17925232 PMID:19583951 PMID:20671152 GO_REF:0000033 MGI:4354659 MGI:4821506 NCBI chr 4:7,525,132...7,576,659
Ensembl chr 4:7,525,004...7,576,548 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (MGI:6377809|PMID:26691508) RGD PMID:26691508 MGI:6377809 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891 		JBrowse link
G Srf serum response factor involved_in ISO (PMID:8887666) RGD PMID:8887666 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Sub1 SUB1 regulator of transcription involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:61,005,646...61,020,486
Ensembl chr 2:61,005,666...61,020,436
Ensembl chr 2:61,005,666...61,020,436 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376 		JBrowse link
G Taf11 TATA-box binding protein associated factor 11 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr20:5,955,774...5,963,593
Ensembl chr20:5,955,777...5,961,905 		JBrowse link
G Taf12 TATA-box binding protein associated factor 12 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849 		JBrowse link
G Taf13 TATA-box binding protein associated factor 13 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 2:196,205,219...196,215,882
Ensembl chr 2:196,205,243...196,215,878 		JBrowse link
G Taf2 TATA-box binding protein associated factor 2 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616 		JBrowse link
G Taf3 TATA-box binding protein associated factor 3 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr17:68,455,389...68,608,367
Ensembl chr17:68,423,909...68,608,367 		JBrowse link
G Taf4 TATA-box binding protein associated factor 4 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356 		JBrowse link
G Taf4b TATA-box binding protein associated factor 4b involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr18:5,952,737...6,086,408
Ensembl chr18:5,952,769...6,068,307 		JBrowse link
G Taf5 TATA-box binding protein associated factor 5 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914 		JBrowse link
G Taf6 TATA-box binding protein associated factor 6 involved_in ISO
IEA		 (PMID:11583621), (PMID:18628956)
GO_REF:0000107
(PMID:17884155)		 RGD
Ensembl		 PMID:11583621 PMID:17884155 PMID:18628956 GO_REF:0000107 NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247 		JBrowse link
G Taf7 TATA-box binding protein associated factor 7 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134 		JBrowse link
G Taf8 TATA-box binding protein associated factor 8 involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in ISO
IEA		 (PMID:17884155)
GO_REF:0000107		 RGD
Ensembl		 PMID:17884155 GO_REF:0000107 NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769 		JBrowse link
G Tbp TATA box binding protein involved_in ISO (PMID:17884155) RGD PMID:17884155 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016 		JBrowse link
G Xpa XPA, DNA damage recognition and repair factor acts_upstream_of_or_within ISO MGI:1100494 (PMID:22323595) RGD PMID:22323595 NCBI chr 5:60,431,673...60,475,726
Ensembl chr 5:60,431,673...60,475,726 		JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 involved_in ISO (MGI:6106288|PMID:29138493) RGD PMID:29138493 MGI:6106288 NCBI chr12:19,686,606...19,692,880
Ensembl chr12:19,686,148...19,692,880 		JBrowse link
regulation of transcription initiation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxo1 forkhead box O1 involved_in IMP PMID:19483080 UniProt PMID:19483080 RGD:401901209 NCBI chr 2:136,312,168...136,390,603
Ensembl chr 2:136,312,168...136,387,790 		JBrowse link
regulation of transcriptional start site selection at RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pwwp2a PWWP domain containing 2A involved_in ISO (MGI:6867108|PMID:33235983) RGD PMID:33235983 MGI:6867108 NCBI chr10:28,155,509...28,195,255
Ensembl chr10:28,155,605...28,194,308 		JBrowse link
RNA polymerase II preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07015889.1 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr14:78,776,373...78,776,700 JBrowse link
G Dr1 down-regulator of transcription 1 involved_in IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr14:1,458,223...1,469,578
Ensembl chr14:1,458,223...1,469,638 		JBrowse link
G ENSRNOG00000064241 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 5:97,975,779...97,977,813 JBrowse link
G ENSRNOG00000067796 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr15:22,674,189...22,674,524 JBrowse link
G Esr1 estrogen receptor 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:9841876)		 Ensembl
RGD		 PMID:9841876 GO_REF:0000107 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002 		JBrowse link
G Gtf2a2 general transcription factor 2A subunit 2 involved_in ISO
IBA
IEA		 (PMID:7958899), (PMID:8626665)
GO_REF:0000033
GO_REF:0000118		 RGD
GO_Central
TreeGrafter		 PMID:7958899 PMID:8626665 GO_REF:0000033 GO_REF:0000118 NCBI chr 8:70,662,447...70,675,576
Ensembl chr 8:70,662,428...70,675,569 		JBrowse link
G Gtf2b general transcription factor IIB involved_in IEA
IBA
ISS
ISO		 GO_REF:0000107
GO_REF:0000033
GO_REF:0000118
GO_REF:0000024
(PMID:3029109), (PMID:8413225), (PMID:9841876)		 Ensembl
GO_Central
TreeGrafter
UniProt
RGD		 PMID:3029109 PMID:8413225 PMID:9841876 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651 		JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 IDA RGD PMID:7929273 RGD:9681417 NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253 		JBrowse link
G Supt3h SPT3 homolog, SAGA and STAGA complex component involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 9:15,878,296...16,206,768
Ensembl chr 9:15,868,287...16,206,706 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:27007846)
MGI:3606185 (PMID:28893950)		 RGD PMID:27007846 PMID:28893950 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376 		JBrowse link
G Taf11 TATA-box binding protein associated factor 11 involved_in ISO
IBA
IEA		 (PMID:27007846)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000002		 RGD
GO_Central
TreeGrafter
InterPro		 PMID:27007846 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr20:5,955,774...5,963,593
Ensembl chr20:5,955,777...5,961,905 		JBrowse link
G Taf11l1 TATA-box binding protein associated factor 11 like 1 involved_in IEA GO_REF:0000002
GO_REF:0000118		 InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr10:73,781,281...73,783,163
Ensembl chr10:73,781,269...73,782,563 		JBrowse link
G Taf12 TATA-box binding protein associated factor 12 involved_in ISO
IBA		 (PMID:27007846)
GO_REF:0000033		 RGD
GO_Central		 PMID:27007846 GO_REF:0000033 NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849 		JBrowse link
G Taf13 TATA-box binding protein associated factor 13 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 2:196,205,219...196,215,882
Ensembl chr 2:196,205,243...196,215,878 		JBrowse link
G Taf2 TATA-box binding protein associated factor 2 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 7:86,422,613...86,479,616
Ensembl chr 7:86,422,613...86,479,616 		JBrowse link
G Taf3 TATA-box binding protein associated factor 3 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr17:68,455,389...68,608,367
Ensembl chr17:68,423,909...68,608,367 		JBrowse link
G Taf4 TATA-box binding protein associated factor 4 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 3:167,017,992...167,083,413
Ensembl chr 3:167,017,993...167,083,356 		JBrowse link
G Taf5 TATA-box binding protein associated factor 5 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914 		JBrowse link
G Taf6 TATA-box binding protein associated factor 6 involved_in ISO
IBA
IEA		 (PMID:27007846)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:27007846 GO_REF:0000033 GO_REF:0000107 NCBI chr12:17,055,864...17,064,244
Ensembl chr12:17,055,873...17,064,247 		JBrowse link
G Taf6l TATA-box binding protein associated factor 6 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:205,672,147...205,684,721
Ensembl chr 1:205,672,149...205,684,655 		JBrowse link
G Taf7 TATA-box binding protein associated factor 7 involved_in ISO
IBA		 (PMID:27007846)
GO_REF:0000033		 RGD
GO_Central		 PMID:27007846 GO_REF:0000033 NCBI chr18:29,459,937...29,462,086
Ensembl chr18:29,452,943...29,462,134 		JBrowse link
G Taf7l TATA-box binding protein associated factor 7-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:97,660,222...97,675,241
Ensembl chr  X:97,660,222...97,675,023 		JBrowse link
G Taf7l-ps1 TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:51,763,259...51,764,401
Ensembl chr 7:51,763,259...51,764,401 		JBrowse link
G Taf8 TATA-box binding protein associated factor 8 involved_in ISO (PMID:27007846) RGD PMID:27007846 NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717 		JBrowse link
G Taf9 TATA-box binding protein associated factor 9 involved_in ISO
IBA
IEA		 (PMID:27007846)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107		 RGD
GO_Central
TreeGrafter
Ensembl		 PMID:27007846 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:31,794,316...31,798,324
Ensembl chr 2:31,794,142...31,798,769 		JBrowse link
G Tbp TATA box binding protein involved_in ISO (PMID:27007846), (PMID:9841876) RGD PMID:9841876 PMID:27007846 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016 		JBrowse link
transcription initiation-coupled chromatin remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ash2l ASH2 like histone lysine methyltransferase complex subunit involved_in ISO (PMID:19556245) RGD PMID:19556245 NCBI chr16:66,242,205...66,264,064
Ensembl chr16:66,242,212...66,264,061 		JBrowse link
G Atad2 ATPase family, AAA domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:89,634,123...89,676,738
Ensembl chr 7:89,634,123...89,676,738 		JBrowse link
G Atad2b ATPase family, AAA domain containing 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:27,914,546...28,070,103
Ensembl chr 6:27,912,862...28,067,047 		JBrowse link
G Atf2 activating transcription factor 2 involved_in ISO
IEA		 (PMID:10821277)
GO_REF:0000107		 RGD
Ensembl		 PMID:10821277 GO_REF:0000107 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236 		JBrowse link
G Bckdk branched chain ketoacid dehydrogenase kinase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:182,515,335...182,520,007
Ensembl chr 1:182,515,327...182,536,633 		JBrowse link
G Brd7 bromodomain containing 7 involved_in ISO (PMID:20228809) RGD PMID:20228809 NCBI chr19:18,708,792...18,737,497
Ensembl chr19:18,709,022...18,737,494 		JBrowse link
G Ctcfl1 CCCTC-binding factor like 1 involved_in ISO (PMID:18765639) RGD PMID:18765639 NCBI chr 3:161,868,306...161,890,949
Ensembl chr 3:161,868,306...161,890,949 		JBrowse link
G Dpy30 dpy-30 histone methyltransferase complex regulatory subunit involved_in ISS
ISO		 GO_REF:0000024
(PMID:19556245)		 UniProt
RGD		 PMID:19556245 GO_REF:0000024 NCBI chr 6:21,120,947...21,141,720
Ensembl chr 6:21,120,947...21,141,432 		JBrowse link
G Ep300 E1A binding protein p300 involved_in ISO (PMID:25818647), (PMID:27256286) RGD PMID:25818647 PMID:27256286 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Fam47a family with sequence similarity 47, member A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:42,762,231...42,763,887
Ensembl chr  X:42,762,229...42,763,883 		JBrowse link
G Fam47e family with sequence similarity 47, member E involved_in ISO (PMID:33376131) RGD PMID:33376131 NCBI chr14:15,485,537...15,521,599
Ensembl chr14:15,485,127...15,521,775 		JBrowse link
G Glyr1 glyoxylate reductase 1 homolog involved_in ISO
IEA		 (PMID:30970244)
GO_REF:0000107		 RGD
Ensembl		 PMID:30970244 GO_REF:0000107 NCBI chr10:10,532,036...10,567,639
Ensembl chr10:10,532,154...10,567,637 		JBrowse link
G Kat7 lysine acetyltransferase 7 involved_in ISO (PMID:21856198)
(MGI:4946451|PMID:21149574)		 RGD PMID:21149574 PMID:21856198 MGI:4946451 NCBI chr10:80,221,519...80,255,590
Ensembl chr10:80,221,524...80,255,567 		JBrowse link
G Kat8 lysine acetyltransferase 8 involved_in IEA
ISO		 GO_REF:0000107
(PMID:15960975)		 Ensembl
RGD		 PMID:15960975 GO_REF:0000107 NCBI chr 1:182,524,355...182,536,638
Ensembl chr 1:182,515,327...182,536,633 		JBrowse link
G Kdm1b lysine demethylase 1B involved_in ISO (PMID:30970244) RGD PMID:30970244 NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800 		JBrowse link
G Kdm2a lysine demethylase 2A involved_in ISO (MGI:6694658|PMID:32584788) RGD PMID:32584788 MGI:6694658 NCBI chr 1:201,612,427...201,682,359
Ensembl chr 1:201,612,453...201,680,787 		JBrowse link
G Kmt2a lysine methyltransferase 2A involved_in ISO (PMID:15960975), (PMID:19556245) RGD PMID:15960975 PMID:19556245 NCBI chr 8:45,116,763...45,193,320
Ensembl chr 8:45,118,814...45,193,181 		JBrowse link
G Lcor ligand dependent nuclear receptor corepressor involved_in ISO (MGI:6159308|PMID:29628311) RGD PMID:29628311 MGI:6159308 NCBI chr 1:240,298,565...240,405,627
Ensembl chr 1:240,298,563...240,402,448 		JBrowse link
G LOC102552474 protein FAM47E-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:13,775,705...13,777,481
Ensembl chr  X:13,776,114...13,777,409 		JBrowse link
G Macroh2a1 macroH2A.1 histone involved_in ISO (PMID:25526730) RGD PMID:25526730 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Men1 menin 1 involved_in ISO
IEA		 (PMID:14992727)
GO_REF:0000107
(MGI:3035842|PMID:14992727)		 RGD
Ensembl		 PMID:14992727 GO_REF:0000107 MGI:3035842 NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871 		JBrowse link
G Myocd myocardin involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:3525929|PMID:15601857)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:15601857 GO_REF:0000024 GO_REF:0000107 MGI:3525929 NCBI chr10:49,833,219...49,928,806
Ensembl chr10:49,836,641...49,927,627 		JBrowse link
G N6amt1 N-6 adenine-specific DNA methyltransferase 1 involved_in ISO (PMID:31061526) RGD PMID:31061526 NCBI chr11:26,584,750...26,597,790
Ensembl chr11:26,584,724...26,608,248 		JBrowse link
G Noc2l NOC2-like nucleolar associated transcriptional repressor involved_in ISO (PMID:16322561) RGD PMID:16322561 NCBI chr 5:166,820,150...166,831,949
Ensembl chr 5:166,820,161...166,831,949 		JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 involved_in IMP PMID:12917342 UniProt PMID:12917342 RGD:8553888 NCBI chr18:31,271,681...31,393,320
Ensembl chr18:31,271,681...31,393,375 		JBrowse link
G Pabpc1l poly(A) binding protein, cytoplasmic 1-like acts_upstream_of_or_within ISO MGI:5437740 (PMID:26134869) RGD PMID:26134869 NCBI chr 3:152,692,825...152,725,997
Ensembl chr 3:152,693,700...152,725,997 		JBrowse link
G Padi2 peptidyl arginine deiminase 2 involved_in ISO
IEA		 (PMID:22853951)
GO_REF:0000107		 RGD
Ensembl		 PMID:22853951 GO_REF:0000107 NCBI chr 5:153,209,053...153,251,632
Ensembl chr 5:153,209,053...153,251,632 		JBrowse link
G Phf2 PHD finger protein 2 involved_in ISO (MGI:6716956|PMID:22921934) RGD PMID:22921934 MGI:6716956 NCBI chr17:15,783,221...15,851,209
Ensembl chr17:15,781,864...15,851,208 		JBrowse link
G Rbbp5 RB binding protein 5, histone lysine methyltransferase complex subunit involved_in ISO (PMID:19556245) RGD PMID:19556245 NCBI chr13:43,912,254...43,939,107
Ensembl chr13:43,912,254...43,939,107 		JBrowse link
G Rbm14 RNA binding motif protein 14 involved_in ISO UniProtKB:Q92793 (PMID:11443112) RGD PMID:11443112 NCBI chr 1:202,076,940...202,105,688
Ensembl chr 1:202,078,287...202,105,665 		JBrowse link
G Sgf29 SAGA complex associated factor 29 involved_in ISO
ISS		 (PMID:23894581)
GO_REF:0000024		 RGD
UniProt		 PMID:23894581 GO_REF:0000024 NCBI chr 1:181,238,458...181,271,931
Ensembl chr 1:181,238,468...181,274,781 		JBrowse link
G Sirt7 sirtuin 7 involved_in ISO (PMID:28655758) RGD PMID:28655758 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO (PMID:34910916) RGD PMID:34910916 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in ISO (PMID:22368283) RGD PMID:22368283 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620 		JBrowse link
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 involved_in ISO (PMID:12917342) RGD PMID:12917342 NCBI chr 7:130,829,783...130,840,323
Ensembl chr 7:130,829,768...130,840,323 		JBrowse link
G Sphk2 sphingosine kinase 2 involved_in ISO (PMID:19729656) RGD PMID:19729656 NCBI chr 1:96,180,872...96,188,592
Ensembl chr 1:96,180,887...96,188,391 		JBrowse link
G Spi1 Spi-1 proto-oncogene involved_in ISO
IEA
ISS		 (PMID:33951726)
GO_REF:0000107
(MGI:6508514|PMID:30171019)
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:30171019 PMID:33951726 GO_REF:0000024 GO_REF:0000107 MGI:6508514 NCBI chr 3:77,059,744...77,093,730
Ensembl chr 3:77,073,012...77,092,393 		JBrowse link
G Tp53 tumor protein p53 involved_in ISO
IEA		 (PMID:16322561)
GO_REF:0000107		 RGD
Ensembl		 PMID:16322561 GO_REF:0000107 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Trmt112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:31061526) RGD PMID:31061526 NCBI chr 1:204,103,298...204,104,151 JBrowse link
G Usp21 ubiquitin specific peptidase 21 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3846030|PMID:18172164)		 UniProt
RGD		 PMID:18172164 GO_REF:0000024 MGI:3846030 NCBI chr13:83,702,672...83,709,215
Ensembl chr13:83,702,631...83,708,717 		JBrowse link
G Vps72 vacuolar protein sorting 72 homolog involved_in ISO UniProtKB:P06899|UniProtKB:P0C0S5 (PMID:26974126) RGD PMID:26974126 NCBI chr 2:182,678,594...182,690,185
Ensembl chr 2:182,678,609...182,690,182 		JBrowse link
G Wbp2 WW domain binding protein 2 involved_in ISO
IEA		 (PMID:23233354)
GO_REF:0000107		 RGD
Ensembl		 PMID:23233354 GO_REF:0000107 NCBI chr10:101,312,476...101,320,775
Ensembl chr10:101,312,446...101,320,736 		JBrowse link
G Wdr5 WD repeat domain 5 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:19556245)		 UniProt
Ensembl
RGD		 PMID:19556245 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:10,836,964...10,856,682
Ensembl chr 3:10,837,025...10,856,671 		JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 involved_in ISO (MGI:6287047|PMID:30842416), (MGI:7260820|PMID:35167494) RGD PMID:30842416 PMID:35167494 MGI:6287047 MGI:7260820 NCBI chr12:19,686,606...19,692,880
Ensembl chr12:19,686,148...19,692,880 		JBrowse link
transcription open complex formation at RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2e1 general transcription factor IIE subunit 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:63,182,073...63,215,349
Ensembl chr11:63,182,349...63,213,942 		JBrowse link
transcriptional start site selection at RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2b general transcription factor IIB involved_in IEA
IBA
ISS
ISO		 GO_REF:0000107
GO_REF:0000033
GO_REF:0000118
GO_REF:0000024
(PMID:10318856)		 Ensembl
GO_Central
TreeGrafter
UniProt
RGD		 PMID:10318856 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    metabolic process 11835
      organic substance metabolic process 11328
        macromolecule metabolic process 9578
          macromolecule biosynthetic process 7463
            RNA biosynthetic process 3411
              DNA-templated transcription initiation 183
                transcription initiation at RNA polymerase II promoter 145
                  RNA polymerase II preinitiation complex assembly + 36
                  negative regulation of transcription initiation by RNA polymerase II + 8
                  positive regulation of transcription initiation by RNA polymerase II + 50
                  regulation of transcription initiation by RNA polymerase II + 59
                  transcription initiation-coupled chromatin remodeling + 54
                  transcription open complex formation at RNA polymerase II promoter + 1
                  transcriptional start site selection at RNA polymerase II promoter + 2
Path 2
Term Annotations click to browse term
  biological_process 20413
    metabolic process 11835
      organic substance metabolic process 11328
        organic cyclic compound metabolic process 6260
          nucleobase-containing compound metabolic process 5743
            nucleic acid metabolic process 5144
              nucleic acid biosynthetic process 3542
                RNA biosynthetic process 3411
                  DNA-templated transcription 3388
                    DNA-templated transcription initiation 183
                      transcription initiation at RNA polymerase II promoter 145
                        RNA polymerase II preinitiation complex assembly + 36
                        negative regulation of transcription initiation by RNA polymerase II + 8
                        positive regulation of transcription initiation by RNA polymerase II + 50
                        regulation of transcription initiation by RNA polymerase II + 59
                        transcription initiation-coupled chromatin remodeling + 54
                        transcription open complex formation at RNA polymerase II promoter + 1
                        transcriptional start site selection at RNA polymerase II promoter + 2
paths to the root