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ONTOLOGY REPORT - ANNOTATIONS

Term:RNA polymerase II-specific DNA-binding transcription factor binding
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Accession:GO:0061629 term browser browse the term
Definition:Binding to a sequence-specific DNA binding RNA polymerase II transcription factor, any of the factors that interact selectively and non-covalently with a specific DNA sequence in order to modulate transcription.
Synonyms:exact_synonym: RNA polymerase II sequence-specific DNA binding transcription factor binding
 related_synonym: RNA polymerase II activating transcription factor binding;   RNA polymerase II repressing transcription factor binding;   RNA polymerase II transcription factor binding
 alt_id: GO:0001085;   GO:0001102;   GO:0001103

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RNA polymerase II-specific DNA-binding transcription factor binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADD1 adducin 1 enables ISO (PMID:16289097) BHF-UCL PMID:16289097 NCBI chr27:45,811,611...45,901,277
Ensembl chr27:45,813,496...45,900,778 		JBrowse link
G AHR aryl hydrocarbon receptor enables IEA Ensembl GO_REF:0000107 NCBI chr21:40,778,198...40,826,491
Ensembl chr21:40,778,218...40,826,478 		JBrowse link
G ANKRD1 ankyrin repeat domain 1 enables ISO (PMID:20599664) BHF-UCL PMID:20599664 NCBI chr 9:84,248,133...84,257,276
Ensembl chr 9:84,247,241...84,257,170 		JBrowse link
G ANKRD2 ankyrin repeat domain 2 enables ISO (PMID:24434510) MGI PMID:24434510 NCBI chr 9:90,733,138...90,745,872 JBrowse link
G AR androgen receptor enables ISO (PMID:16120611)
(PMID:12799378)		 BHF-UCL PMID:12799378 PMID:16120611 NCBI chr  X:57,380,587...57,553,613
Ensembl chr  X:57,380,611...57,546,776 		JBrowse link
G ARNT aryl hydrocarbon receptor nuclear translocator enables IEA Ensembl GO_REF:0000107
G ATF2 activating transcription factor 2 enables ISO (PMID:19861239) BHF-UCL PMID:19861239 NCBI chr10:60,644,623...60,734,465
Ensembl chr10:60,644,635...60,734,475 		JBrowse link
G ATF4 activating transcription factor 4 enables IEA Ensembl GO_REF:0000107 NCBI chr19:22,092,046...22,094,184
Ensembl chr19:22,091,667...22,095,230 		JBrowse link
G BBS1 Bardet-Biedl syndrome 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:7,737,887...7,765,022
Ensembl chr 1:7,737,578...7,764,732 		JBrowse link
G BBS10 Bardet-Biedl syndrome 10 enables IEA Ensembl GO_REF:0000107 NCBI chr11:71,921,816...71,925,164
Ensembl chr11:71,921,893...71,924,551 		JBrowse link
G BBS2 Bardet-Biedl syndrome 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:42,395,387...42,430,204
Ensembl chr 5:42,395,230...42,430,154 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 enables IEA Ensembl GO_REF:0000107 NCBI chr26:10,742,982...10,799,615
Ensembl chr26:10,743,850...10,775,908 		JBrowse link
G BBS5 Bardet-Biedl syndrome 5 enables IEA Ensembl GO_REF:0000107 NCBI chr10:54,995,928...55,021,589
Ensembl chr10:54,996,240...55,021,580 		JBrowse link
G BBS7 Bardet-Biedl syndrome 7 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:69,100,287...69,153,009
Ensembl chr 7:69,101,662...69,152,768 		JBrowse link
G BEX1 brain expressed X-linked 1 enables ISO (PMID:16314316) BHF-UCL PMID:16314316 NCBI chr  X:90,984,435...90,986,054 JBrowse link
G BHLHE40 basic helix-loop-helix family member e40 enables ISO (MGI:5306297|PMID:17487425) BHF-UCL PMID:17487425 MGI:5306297 NCBI chr22:41,049,673...41,055,365
Ensembl chr22:41,049,712...41,055,360 		JBrowse link
G BHLHE41 basic helix-loop-helix family member e41 enables IEA Ensembl GO_REF:0000107 NCBI chr11:25,872,139...25,879,985
Ensembl chr11:25,874,108...25,876,826 		JBrowse link
G CD34 CD34 molecule enables ISO (PMID:21873977) UniProt PMID:21873977 NCBI chr25:21,534,969...21,559,951
Ensembl chr25:21,534,983...21,561,215 		JBrowse link
G CEBPA CCAAT enhancer binding protein alpha enables ISO (PMID:24429361) ARUK-UCL PMID:24429361 NCBI chr 6:28,342,506...28,345,759
Ensembl chr 6:28,343,907...28,344,977 		JBrowse link
G CEBPB CCAAT enhancer binding protein beta enables ISO PMID:1547942 ParkinsonsUK-UCL PMID:1547942 RGD:10047202 NCBI chr 2:13,780,538...13,782,639
Ensembl chr 2:13,781,160...13,782,194 		JBrowse link
G CHD4 chromodomain helicase DNA binding protein 4 enables IEA Ensembl GO_REF:0000107 NCBI chr11:6,603,820...6,641,278
Ensembl chr11:6,602,694...6,640,351 		JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 enables IEA Ensembl GO_REF:0000107 NCBI chr13:34,009,527...34,011,924
Ensembl chr13:34,010,228...34,011,046 		JBrowse link
G CREB1 cAMP responsive element binding protein 1 enables ISO (PMID:19861239) BHF-UCL PMID:19861239 NCBI chr10:93,316,774...93,395,187
Ensembl chr10:93,316,840...93,388,832 		JBrowse link
G CREBBP CREB binding protein enables IEA UniProt GO_REF:0000117 NCBI chr 5:3,415,548...3,570,030
Ensembl chr 5:3,415,412...3,540,943 		JBrowse link
G CRKL CRK like proto-oncogene, adaptor protein enables ISO (PMID:29581031) MGI PMID:29581031
G CSNK2B casein kinase 2 beta enables IEA Ensembl GO_REF:0000107 NCBI chr17:40,354,520...40,359,136
Ensembl chr17:40,352,367...40,358,401 		JBrowse link
G CSRP3 cysteine and glycine rich protein 3 enables ISO PMID:9234731 MGI PMID:9234731 RGD:10047266 NCBI chr 1:45,792,106...45,813,715
Ensembl chr 1:45,803,243...45,813,800 		JBrowse link
G CTBP1 C-terminal binding protein 1 enables ISO (MGI:3606794|PMID:14701752) UniProt PMID:14701752 MGI:3606794 NCBI chr27:47,533,490...47,570,505
Ensembl chr27:47,544,682...47,570,636 		JBrowse link
G CTNNB1 catenin beta 1 enables IEA Ensembl GO_REF:0000107 NCBI chr22:2,679,488...2,725,034
Ensembl chr22:2,684,022...2,723,949 		JBrowse link
G DACT1 dishevelled binding antagonist of beta catenin 1 enables IEA Ensembl GO_REF:0000107 NCBI chr24:35,821,518...35,832,486
Ensembl chr24:35,821,990...35,832,712 		JBrowse link
G DAXX death domain associated protein enables IEA Ensembl GO_REF:0000107 NCBI chr17:38,754,227...38,758,714
Ensembl chr17:38,754,280...38,759,071 		JBrowse link
G DDIT3 DNA damage inducible transcript 3 enables IEA Ensembl GO_REF:0000107 NCBI chr11:53,424,693...53,429,094
Ensembl chr11:53,424,868...53,425,576 		JBrowse link
G DDRGK1 DDRGK domain containing 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:33,846,591...33,879,770
Ensembl chr 2:33,860,439...33,880,101 		JBrowse link
G DHX9 DExH-box helicase 9 enables IEA Ensembl GO_REF:0000107 NCBI chr25:46,485,602...46,534,046
Ensembl chr25:46,485,427...46,518,406 		JBrowse link
G DMAP1 DNA methyltransferase 1 associated protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr20:88,570,281...88,577,747
Ensembl chr20:88,570,341...88,577,306 		JBrowse link
G DNAJA3 DnaJ heat shock protein family (Hsp40) member A3 enables ISO (PMID:16531398) UniProt PMID:16531398 NCBI chr 5:4,109,612...4,139,789 JBrowse link
G DNMT3A DNA methyltransferase 3 alpha enables ISO (PMID:19786833) BHF-UCL PMID:19786833 NCBI chr14:82,313,414...82,427,170
Ensembl chr14:82,402,826...82,420,819 		JBrowse link
G DOT1L DOT1 like histone lysine methyltransferase enables ISO (PMID:22002246) UniProt PMID:22002246 NCBI chr 6:1,962,077...2,030,732
Ensembl chr 6:1,962,279...2,026,455 		JBrowse link
G DUSP26 dual specificity phosphatase 26 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:31,667,984...31,679,040
Ensembl chr 8:31,666,691...31,679,058 		JBrowse link
G E4F1 E4F transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:2,117,936...2,130,787
Ensembl chr 5:2,117,479...2,130,623 		JBrowse link
G EGR2 early growth response 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:68,472,640...68,479,612
Ensembl chr 9:68,475,102...68,479,595 		JBrowse link
G ELK1 ETS transcription factor ELK1 enables ISO (PMID:26612202) UniProt PMID:26612202
G EOMES eomesodermin enables ISO (MGI:5448510|PMID:22164283) BHF-UCL PMID:22164283 MGI:5448510 NCBI chr15:72,257,626...72,264,563 JBrowse link
G EP300 E1A binding protein p300 enables IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr19:23,634,132...23,726,095
Ensembl chr19:23,634,571...23,724,979 		JBrowse link
G EPAS1 endothelial PAS domain protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr14:60,823,110...60,912,804
Ensembl chr14:60,822,815...60,912,785 		JBrowse link
G ESRRB estrogen related receptor beta enables ISO (MGI:3813404|PMID:18662995) BHF-UCL PMID:18662995 MGI:3813404 NCBI chr24:53,630,998...53,762,098 JBrowse link
G ETS1 ETS proto-oncogene 1, transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chr 1:119,588,476...119,736,623
Ensembl chr 1:119,588,448...119,652,299 		JBrowse link
G ETS2 ETS proto-oncogene 2, transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chr 2:82,751,196...82,770,051
Ensembl chr 2:82,757,930...82,770,165 		JBrowse link
G EXOSC9 exosome component 9 ISO RGD PMID:9148967 RGD:10755760 NCBI chr 7:69,077,227...69,092,867
Ensembl chr 7:69,077,164...69,092,810 		JBrowse link
G FBP1 fructose-bisphosphatase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr12:108,452,856...108,484,052
Ensembl chr12:108,453,156...108,483,775 		JBrowse link
G FOS Fos proto-oncogene, AP-1 transcription factor subunit enables IEA Ensembl GO_REF:0000107 NCBI chr24:52,497,465...52,501,161
Ensembl chr24:52,497,521...52,501,514 		JBrowse link
G FOXA1 forkhead box A1 enables ISO PMID:17220277 ARUK-UCL PMID:17220277 RGD:8554147 NCBI chr24:14,397,759...14,403,078
Ensembl chr24:14,396,702...14,403,094 		JBrowse link
G FOXC1 forkhead box C1 enables IEA Ensembl GO_REF:0000107 NCBI chr17:70,533,048...70,536,555
Ensembl chr17:70,534,821...70,536,476 		JBrowse link
G GATA1 GATA binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr  X:45,912,638...45,920,415
Ensembl chr  X:45,917,231...45,920,268 		JBrowse link
G GATA2 GATA binding protein 2 enables ISO (PMID:15016828) BHF-UCL PMID:15016828 NCBI chr22:52,549,112...52,562,911
Ensembl chr22:52,555,738...52,562,909 		JBrowse link
G GATA3 GATA binding protein 3 enables ISO (PMID:15016828) BHF-UCL PMID:15016828 NCBI chr 9:8,101,404...8,122,762
Ensembl chr 9:8,101,432...8,123,064 		JBrowse link
G GATA4 GATA binding protein 4 enables ISO PMID:11994297
(PMID:9858576)
(PMID:21330551)		 BHF-UCL PMID:9858576 PMID:11994297 PMID:21330551 RGD:727369 NCBI chr 8:7,348,145...7,432,574
Ensembl chr 8:7,349,660...7,400,562 		JBrowse link
G GATA6 GATA binding protein 6 enables ISO (MGI:3610837|PMID:16293227) BHF-UCL PMID:16293227 MGI:3610837 NCBI chr18:58,312,328...58,345,472
Ensembl chr18:58,311,482...58,343,746 		JBrowse link
G GBX2 gastrulation brain homeobox 2 enables ISO (PMID:23144817) MGI PMID:23144817 NCBI chr10:122,177,725...122,184,448
Ensembl chr10:122,182,301...122,184,446 		JBrowse link
G GFI1B growth factor independent 1B transcriptional repressor enables ISO (PMID:15920471) BHF-UCL PMID:15920471 NCBI chr12:5,145,194...5,158,659
Ensembl chr12:5,145,844...5,150,274 		JBrowse link
G GSC goosecoid homeobox enables IEA Ensembl GO_REF:0000107 NCBI chr24:72,581,639...72,585,745
Ensembl chr24:72,581,915...72,583,423 		JBrowse link
G GSK3B glycogen synthase kinase 3 beta enables IEA Ensembl GO_REF:0000107 NCBI chr22:60,732,449...61,002,735
Ensembl chr22:60,733,465...60,997,239 		JBrowse link
G GTF2A1 general transcription factor IIA subunit 1 enables IEA Ensembl GO_REF:0000107 NCBI chr24:58,506,888...58,552,587
Ensembl chr24:58,506,537...58,551,069 		JBrowse link
G GTF2A2 general transcription factor IIA subunit 2 enables ISO (PMID:19235719) MGI PMID:19235719 NCBI chr26:23,850,483...23,868,477 JBrowse link
G GTF2I general transcription factor IIi enables IEA Ensembl GO_REF:0000107 NCBI chr28:8,361,187...8,463,469
Ensembl chr28:8,363,057...8,435,750 		JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 enables IEA Ensembl GO_REF:0000107 NCBI chr23:56,928,164...56,935,675
Ensembl chr23:56,928,676...56,931,785 		JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 7:119,635,697...119,639,415
Ensembl chr 7:119,634,741...119,638,546 		JBrowse link
G HCLS1 hematopoietic cell-specific Lyn substrate 1 enables ISO (PMID:23001182) BHF-UCL PMID:23001182 NCBI chr22:59,225,768...59,255,744
Ensembl chr22:59,225,750...59,256,243 		JBrowse link
G HDAC1 histone deacetylase 1 enables ISO (PMID:18850004)
(PMID:19235719)
(PMID:22926524)
(PMID:18936100)		 BHF-UCL
MGI
ParkinsonsUK-UCL		 PMID:18850004 PMID:18936100 PMID:19235719 PMID:22926524 NCBI chr20:100,529,782...100,575,953
Ensembl chr20:100,530,369...100,558,556 		JBrowse link
G HDAC2 histone deacetylase 2 enables ISO (PMID:17827154)
(PMID:22926524)		 BHF-UCL PMID:17827154 PMID:22926524 NCBI chr13:59,873,248...59,904,542
Ensembl chr13:59,873,767...59,905,742 		JBrowse link
G HDAC4 histone deacetylase 4 enables ISO (PMID:23867755)
(PMID:18850004)
(PMID:19071119)		 UniProt
BHF-UCL		 PMID:18850004 PMID:19071119 PMID:23867755 NCBI chr10:125,098,375...125,450,524
Ensembl chr10:125,098,366...125,403,227 		JBrowse link
G HDAC5 histone deacetylase 5 enables IEA Ensembl GO_REF:0000107 NCBI chr16:62,267,837...62,314,914
Ensembl chr16:62,274,041...62,315,094 		JBrowse link
G HDAC9 histone deacetylase 9 enables ISO (PMID:15567413)
(PMID:19303849)
(PMID:11535832)		 BHF-UCL PMID:11535832 PMID:15567413 PMID:19303849 NCBI chr21:39,159,270...39,859,403 JBrowse link
G HES1 hes family bHLH transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr15:88,220,093...88,222,563
Ensembl chr15:88,220,083...88,223,243 		JBrowse link
G HES6 hes family bHLH transcription factor 6 enables ISO (MGI:1859234|PMID:10851137) ARUK-UCL PMID:10851137 MGI:1859234 NCBI chr10:124,263,894...124,266,345
Ensembl chr10:124,264,456...124,265,542 		JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 enables ISO (PMID:10692439) BHF-UCL PMID:10692439 NCBI chr 8:75,225,081...75,228,941
Ensembl chr 8:75,224,769...75,228,896 		JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 enables IEA Ensembl GO_REF:0000107 NCBI chr13:47,965,808...47,977,435
Ensembl chr13:47,964,847...47,977,346 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha enables IEA Ensembl GO_REF:0000107 NCBI chr24:38,873,830...38,927,657
Ensembl chr24:38,873,861...38,928,288 		JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 enables ISO (PMID:14647468)
(MGI:5306308|PMID:16407227)		 BHF-UCL PMID:14647468 PMID:16407227 MGI:5306308 NCBI chr21:108,310,782...108,533,274
Ensembl chr21:108,322,096...108,533,226 		JBrowse link
G HIRA histone cell cycle regulator enables ISO (PMID:9731536) ARUK-UCL PMID:9731536 NCBI chr19:6,324,050...6,424,999
Ensembl chr19:6,324,253...6,425,641 		JBrowse link
G HMGA2 high mobility group AT-hook 2 enables ISO (PMID:14645522) UniProt PMID:14645522 NCBI chr11:61,509,114...61,655,633 JBrowse link
G HMGB1 high mobility group box 1 enables ISO (PMID:19223331) UniProt PMID:19223331 NCBI chr 3:9,353,333...9,357,765 JBrowse link
G HNF4A hepatocyte nuclear factor 4 alpha enables IEA Ensembl GO_REF:0000107 NCBI chr 2:19,390,870...19,466,300
Ensembl chr 2:19,388,891...19,421,664 		JBrowse link
G HSPA4 heat shock protein family A (Hsp70) member 4 ISO RGD PMID:17473852 RGD:5688754 NCBI chr23:35,862,817...35,917,490
Ensembl chr23:35,862,814...35,918,287 		JBrowse link
G HSPB1 heat shock protein family B (small) member 1 enables ISO (PMID:10386584) ARUK-UCL PMID:10386584 NCBI chr28:10,442,530...10,443,804
Ensembl chr28:10,442,398...10,443,855 		JBrowse link
G ID2 inhibitor of DNA binding 2 enables ISO (MGI:1934945|PMID:10652346) ARUK-UCL PMID:10652346 MGI:1934945 NCBI chr14:98,962,001...98,964,486 JBrowse link
G ID4 inhibitor of DNA binding 4, HLH protein enables ISO (PMID:20628571) MGI PMID:20628571 NCBI chr17:52,349,908...52,353,218
Ensembl chr17:52,348,388...52,353,281 		JBrowse link
G IFI27 interferon alpha inducible protein 27 enables ISO (PMID:22427340) MGI PMID:22427340 NCBI chr24:71,884,130...71,890,813 JBrowse link
G IFRD1 interferon related developmental regulator 1 enables ISO PMID:15743821 MGI PMID:15743821 RGD:10047350 NCBI chr21:81,266,685...81,292,434
Ensembl chr21:81,266,667...81,294,419 		JBrowse link
G ISL1 ISL LIM homeobox 1 enables ISO (PMID:19619559) BHF-UCL PMID:19619559 NCBI chr 4:47,665,861...47,678,631
Ensembl chr 4:47,666,536...47,677,552 		JBrowse link
G JUN Jun proto-oncogene, AP-1 transcription factor subunit enables ISO (PMID:19861239)
(PMID:10508860)
(PMID:16007074)		 BHF-UCL
CAFA		 PMID:10508860 PMID:16007074 PMID:19861239 NCBI chr20:74,204,481...74,207,835
Ensembl chr20:74,205,542...74,206,546 		JBrowse link
G KAT8 lysine acetyltransferase 8 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:27,806,082...27,820,832
Ensembl chr 5:27,805,844...27,820,748 		JBrowse link
G KDM1A lysine demethylase 1A enables ISO (MGI:4461095|PMID:20123967) BHF-UCL PMID:20123967 MGI:4461095 NCBI chr20:109,592,761...109,657,885
Ensembl chr20:109,593,074...109,657,839 		JBrowse link
G KDM5C lysine demethylase 5C enables ISO (PMID:18078810) MGI PMID:18078810 NCBI chr  X:49,306,472...49,356,151
Ensembl chr  X:49,321,173...49,356,100 		JBrowse link
G KEAP1 kelch like ECH associated protein 1 enables ISO (PMID:17015834) ParkinsonsUK-UCL PMID:17015834 NCBI chr 6:9,515,789...9,526,699
Ensembl chr 6:9,515,416...9,522,797 		JBrowse link
G KLF4 KLF transcription factor 4 enables ISO (MGI:4887558|PMID:18396140)
(PMID:24129709)
(PMID:21539536)		 BHF-UCL
MGI		 PMID:18396140 PMID:21539536 PMID:24129709 MGI:4887558 NCBI chr12:32,045,690...32,050,531
Ensembl chr12:32,045,609...32,050,703 		JBrowse link
G LDB1 LIM domain binding 1 enables ISO (PMID:16314316) BHF-UCL PMID:16314316 NCBI chr 9:95,102,312...95,153,029
Ensembl chr 9:95,138,424...95,153,179 		JBrowse link
G LHX3 LIM homeobox 3 enables ISO (PMID:26612202) UniProt PMID:26612202 NCBI chr12:1,997,437...2,007,473
Ensembl chr12:2,000,638...2,006,430 		JBrowse link
G LMO2 LIM domain only 2 enables ISO (PMID:16314316) BHF-UCL PMID:16314316 NCBI chr 1:31,382,437...31,416,256
Ensembl chr 1:31,404,872...31,416,883 		JBrowse link
G LOC103222955 uncharacterized LOC103222955 enables IEA Ensembl GO_REF:0000107 NCBI chr19:4,855,633...4,889,674
Ensembl chr19:4,855,611...4,890,302 		JBrowse link
G LOC103223491 peroxisome proliferator-activated receptor alpha enables IEA Ensembl GO_REF:0000107 NCBI chr19:28,614,892...28,709,272
Ensembl chr19:28,615,413...28,708,763 		JBrowse link
G LOC103236829 short chain dehydrogenase/reductase family 16C member 5 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:52,330,362...52,365,253
Ensembl chr 8:52,330,731...52,351,250 		JBrowse link
G LOC103239432 myoblast determination protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:47,250,927...47,254,572
Ensembl chr 1:47,251,551...47,253,284 		JBrowse link
G LPIN1 lipin 1 enables ISO (PMID:20385772) MGI PMID:20385772 NCBI chr14:95,777,976...95,926,420
Ensembl chr14:95,780,478...95,926,419 		JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 enables ISO (PMID:19443654) BHF-UCL PMID:19443654 NCBI chr20:120,099,928...120,115,954
Ensembl chr20:120,110,269...120,116,083 		JBrowse link
G MED1 mediator complex subunit 1 enables IEA Ensembl GO_REF:0000107 NCBI chr16:66,719,393...66,764,902
Ensembl chr16:66,719,423...66,762,896 		JBrowse link
G MEF2A myocyte enhancer factor 2A enables IEA Ensembl GO_REF:0000107 NCBI chr29:18,150,315...18,312,975
Ensembl chr29:18,150,854...18,309,247 		JBrowse link
G MEF2C myocyte enhancer factor 2C enables ISO (PMID:16043483) BHF-UCL PMID:16043483 NCBI chr 4:82,702,378...82,887,491
Ensembl chr 4:82,706,738...82,788,152 		JBrowse link
G MEF2D myocyte enhancer factor 2D enables ISO (PMID:16043483) BHF-UCL PMID:16043483 NCBI chr20:7,358,647...7,394,068
Ensembl chr20:7,358,653...7,396,972 		JBrowse link
G MIXL1 Mix paired-like homeobox enables IEA Ensembl GO_REF:0000107 NCBI chr25:3,542,923...3,546,561
Ensembl chr25:3,544,169...3,546,305 		JBrowse link
G MKKS MKKS centrosomal shuttling protein enables IEA Ensembl GO_REF:0000107 NCBI chr 2:27,728,295...27,757,569
Ensembl chr 2:27,736,537...27,757,237 		JBrowse link
G MKX mohawk homeobox enables ISO (PMID:19235719) MGI PMID:19235719 NCBI chr 9:27,228,061...27,305,852 JBrowse link
G MLX MAX dimerization protein MLX enables IEA Ensembl GO_REF:0000107 NCBI chr16:63,714,934...63,720,466
Ensembl chr16:63,716,012...63,720,408 		JBrowse link
G MLXIPL MLX interacting protein like enables IEA Ensembl GO_REF:0000107 NCBI chr28:9,442,520...9,465,772 JBrowse link
G MTA1 metastasis associated 1 enables IEA Ensembl GO_REF:0000107 NCBI chr24:83,315,917...83,368,746 JBrowse link
G MTA2 metastasis associated 1 family member 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:11,303,145...11,311,792
Ensembl chr 1:11,303,494...11,311,379 		JBrowse link
G MTDH metadherin enables ISO (PMID:18316612) UniProt PMID:18316612 NCBI chr 8:92,563,480...92,641,874
Ensembl chr 8:92,563,550...92,640,231 		JBrowse link
G MYOCD myocardin enables IEA Ensembl GO_REF:0000107 NCBI chr16:11,923,464...12,100,897
Ensembl chr16:12,000,197...12,095,552 		JBrowse link
G NCOA1 nuclear receptor coactivator 1 enables IEA UniProt GO_REF:0000117 NCBI chr14:82,898,368...83,028,137
Ensembl chr14:82,897,348...83,013,589 		JBrowse link
G NCOA2 nuclear receptor coactivator 2 enables IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr 8:65,855,232...66,151,733
Ensembl chr 8:65,855,235...66,040,947 		JBrowse link
G NCOA3 nuclear receptor coactivator 3 enables IEA UniProt GO_REF:0000117 NCBI chr 2:16,270,218...16,423,381
Ensembl chr 2:16,273,717...16,423,318 		JBrowse link
G NCOR1 nuclear receptor corepressor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr16:15,442,315...15,629,411
Ensembl chr16:15,462,640...15,628,512 		JBrowse link
G NEUROD1 neuronal differentiation 1 enables IEA Ensembl GO_REF:0000107 NCBI chr10:67,203,714...67,208,644
Ensembl chr10:67,205,141...67,206,211 		JBrowse link
G NFATC1 nuclear factor of activated T cells 1 enables ISO (MGI:5306313|PMID:15304486) BHF-UCL PMID:15304486 MGI:5306313 NCBI chr18:690,313...815,804
Ensembl chr18:689,671...811,100 		JBrowse link
G NFE2L2 NFE2 like bZIP transcription factor 2 enables ISO (PMID:23043106) BHF-UCL PMID:23043106 NCBI chr10:62,789,647...62,825,651
Ensembl chr10:62,790,124...62,825,339 		JBrowse link
G NHLH2 nescient helix-loop-helix 2 enables IEA Ensembl GO_REF:0000107 NCBI chr20:17,865,226...17,869,955
Ensembl chr20:17,867,929...17,868,336 		JBrowse link
G NIF3L1 NGG1 interacting factor 3 like 1 enables ISO (PMID:15163635) BHF-UCL PMID:15163635 NCBI chr10:86,545,392...86,593,386
Ensembl chr10:86,545,014...86,564,263 		JBrowse link
G NKX2-1 NK2 homeobox 1 enables ISO (PMID:17220277) ARUK-UCL PMID:17220277 NCBI chr24:13,274,118...13,317,533
Ensembl chr24:13,310,846...13,317,056 		JBrowse link
G NKX2-5 NK2 homeobox 5 enables IEA Ensembl GO_REF:0000107 NCBI chr23:75,391,833...75,399,003
Ensembl chr23:75,391,847...75,395,205 		JBrowse link
G NR0B1 nuclear receptor subfamily 0 group B member 1 enables ISO (PMID:19651776) BHF-UCL PMID:19651776 NCBI chr  X:28,707,698...28,713,158
Ensembl chr  X:28,707,699...28,712,708 		JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 enables ISO (PMID:19303849) BHF-UCL PMID:19303849 NCBI chr25:3,350,798...3,405,040 JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 enables IEA Ensembl GO_REF:0000107 Ensembl chr25:3,350,821...3,388,826 JBrowse link
G PIAS2 protein inhibitor of activated STAT 2 enables ISO (PMID:20408817)
(MGI:5616311|PMID:20408817)		 ParkinsonsUK-UCL PMID:20408817 MGI:5616311 NCBI chr18:33,967,894...34,075,824
Ensembl chr18:33,967,999...34,067,910 		JBrowse link
G PITX1 paired like homeodomain 1 enables IEA Ensembl GO_REF:0000107 NCBI chr23:37,807,486...37,820,540
Ensembl chr23:37,807,378...37,813,948 		JBrowse link
G PITX2 paired like homeodomain 2 enables ISO (PMID:16449236)
(PMID:12612071), (PMID:9685346)
(PMID:15466416)		 BHF-UCL PMID:9685346 PMID:12612071 PMID:15466416 PMID:16449236 NCBI chr 7:58,501,669...58,526,413
Ensembl chr 7:58,501,559...58,507,318 		JBrowse link
G POU1F1 POU class 1 homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chr22:89,649,971...89,668,675
Ensembl chr22:89,649,999...89,668,941 		JBrowse link
G POU4F1 POU class 4 homeobox 1 enables ISO (MGI:5688842|PMID:18421303)
PMID:10329733		 ARUK-UCL PMID:10329733 PMID:18421303 MGI:5688842 RGD:14697712 NCBI chr 3:57,667,248...57,673,071 JBrowse link
G POU5F1 POU class 5 homeobox 1 enables ISO (PMID:19736317)
(MGI:3813404|PMID:18662995)		 BHF-UCL PMID:18662995 PMID:19736317 MGI:3813404 NCBI chr17:41,306,523...41,313,065 JBrowse link
G PPARA peroxisome proliferator activated receptor alpha enables ISO (PMID:19955185) BHF-UCL PMID:19955185
G PPARGC1A PPARG coactivator 1 alpha enables IEA Ensembl GO_REF:0000107 NCBI chr27:25,882,385...26,563,530
Ensembl chr27:26,465,499...26,564,582 		JBrowse link
G PRDM13 PR/SET domain 13 enables ISO (MGI:5490929|PMID:23639443) ARUK-UCL PMID:23639443 MGI:5490929 NCBI chr13:74,267,245...74,280,131
Ensembl chr13:74,267,329...74,275,085 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit enables IEA Ensembl GO_REF:0000107 NCBI chr 8:43,915,226...44,119,547
Ensembl chr 8:43,914,636...44,119,541 		JBrowse link
G PRRX1 paired related homeobox 1 enables ISO (PMID:9334314) ARUK-UCL PMID:9334314 NCBI chr25:58,347,686...58,423,454
Ensembl chr25:58,347,704...58,421,980 		JBrowse link
G RAD23B RAD23 homolog B, nucleotide excision repair protein enables ISO (PMID:25901318) MGI PMID:25901318 NCBI chr12:32,203,501...32,250,555
Ensembl chr12:32,204,893...32,250,570 		JBrowse link
G RB1 RB transcriptional corepressor 1 enables ISO (MGI:5285162|PMID:20224733) BHF-UCL PMID:20224733 MGI:5285162 NCBI chr 3:26,220,783...26,393,671
Ensembl chr 3:26,220,803...26,394,546 		JBrowse link
G RBBP8 RB binding protein 8, endonuclease enables IEA Ensembl GO_REF:0000107 NCBI chr18:57,501,070...57,617,301
Ensembl chr18:57,501,271...57,597,670 		JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region enables ISO (PMID:16287852) BHF-UCL PMID:16287852 NCBI chr27:23,911,084...24,023,856 JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region enables IEA Ensembl GO_REF:0000107 Ensembl chr27:23,910,533...23,921,725 JBrowse link
G RBX1 ring-box 1 enables ISO (PMID:14739464) UniProt PMID:14739464 NCBI chr19:23,500,361...23,521,676
Ensembl chr19:23,500,356...23,522,723 		JBrowse link
G REST RE1 silencing transcription factor enables IEA Ensembl GO_REF:0000107 NCBI chr 7:11,749,312...11,776,103
Ensembl chr 7:11,749,168...11,773,340 		JBrowse link
G SALL1 spalt like transcription factor 1 enables ISO (MGI:4946171|PMID:21062744) BHF-UCL PMID:21062744 MGI:4946171 NCBI chr 5:36,928,711...36,944,158
Ensembl chr 5:36,927,990...36,943,630 		JBrowse link
G SETD1A SET domain containing 1A, histone lysine methyltransferase enables IEA Ensembl GO_REF:0000107 NCBI chr 5:27,645,908...27,675,500
Ensembl chr 5:27,648,378...27,674,860 		JBrowse link
G SETD3 SET domain containing 3, actin N3(tau)-histidine methyltransferase enables IEA Ensembl GO_REF:0000107 NCBI chr24:77,346,119...77,435,978
Ensembl chr24:77,345,205...77,435,896 		JBrowse link
G SIN3A SIN3 transcription regulator family member A enables IEA Ensembl GO_REF:0000107 NCBI chr26:7,971,208...8,060,888
Ensembl chr26:7,975,484...8,058,278 		JBrowse link
G SMAD2 SMAD family member 2 enables ISO (MGI:4399035|PMID:11937490) UniProt PMID:11937490 MGI:4399035 NCBI chr18:33,017,138...33,105,320
Ensembl chr18:33,017,492...33,104,606 		JBrowse link
G SMAD3 SMAD family member 3 enables ISO (PMID:9732876)
(PMID:17251190)
(MGI:4399035|PMID:11937490)		 BHF-UCL
UniProt		 PMID:9732876 PMID:11937490 PMID:17251190 MGI:4399035 NCBI chr26:16,319,959...16,446,472
Ensembl chr26:16,320,933...16,446,527 		JBrowse link
G SMAD4 SMAD family member 4 enables IEA Ensembl GO_REF:0000107 NCBI chr18:29,894,157...29,951,445
Ensembl chr18:29,897,621...29,934,478 		JBrowse link
G SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 enables ISO (PMID:27141965) ParkinsonsUK-UCL PMID:27141965 NCBI chr  X:104,690,937...104,768,326
Ensembl chr  X:104,690,689...104,768,298 		JBrowse link
G SOX17 SRY-box transcription factor 17 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:50,523,816...50,527,360
Ensembl chr 8:50,524,893...50,527,847 		JBrowse link
G SOX2 SRY-box transcription factor 2 enables ISO (PMID:25901318) MGI PMID:25901318 NCBI chr15:7,673,581...7,676,812
Ensembl chr15:7,674,867...7,675,826 		JBrowse link
G SP1 Sp1 transcription factor enables ISO (MGI:5297791|PMID:12657651) BHF-UCL PMID:12657651 MGI:5297791 NCBI chr11:49,484,459...49,516,941
Ensembl chr11:49,484,518...49,512,541 		JBrowse link
G SP100 SP100 nuclear antigen enables ISO (PMID:11909962) BHF-UCL PMID:11909962 NCBI chr10:116,454,261...116,587,093
Ensembl chr10:116,459,050...116,590,215 		JBrowse link
G SP3 Sp3 transcription factor enables ISO PMID:17130167
(MGI:5009400|PMID:17130167)
(PMID:17130167)		 UniProt PMID:17130167 MGI:5009400 RGD:8553999 NCBI chr10:59,414,739...59,471,596
Ensembl chr10:59,416,152...59,470,456 		JBrowse link
G SPEN spen family transcriptional repressor enables IEA Ensembl GO_REF:0000107 NCBI chr20:116,359,981...116,458,156
Ensembl chr20:116,361,008...116,458,064 		JBrowse link
G SPI1 Spi-1 proto-oncogene enables IEA Ensembl GO_REF:0000107 NCBI chr 1:17,935,037...17,961,638
Ensembl chr 1:17,935,922...17,961,717 		JBrowse link
G SPOP speckle type BTB/POZ protein enables ISO (PMID:19684112) MGI PMID:19684112 NCBI chr16:69,990,554...70,073,241 JBrowse link
G SRF serum response factor enables ISO (MGI:2136697|PMID:11439182) BHF-UCL PMID:11439182 MGI:2136697 NCBI chr17:28,983,161...28,993,465
Ensembl chr17:28,983,002...28,992,995 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 enables IEA Ensembl GO_REF:0000107 NCBI chr16:63,877,884...63,957,894
Ensembl chr16:63,922,862...63,957,984 		JBrowse link
G STING1 stimulator of interferon response cGAMP interactor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr23:42,153,576...42,160,903
Ensembl chr23:42,153,026...42,160,907 		JBrowse link
G STK4 serine/threonine kinase 4 enables ISO (PMID:16751106) UniProt PMID:16751106 NCBI chr 2:18,737,484...18,844,610
Ensembl chr 2:18,742,162...18,844,647 		JBrowse link
G TAF1 TATA-box binding protein associated factor 1 enables ISO (PMID:24289924) ParkinsonsUK-UCL PMID:24289924 NCBI chr  X:61,167,743...61,269,000
Ensembl chr  X:61,167,589...61,268,839 		JBrowse link
G TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor enables IEA Ensembl GO_REF:0000107 NCBI chr20:85,681,247...85,697,887
Ensembl chr20:85,688,155...85,694,829 		JBrowse link
G TBP TATA-box binding protein enables ISO (PMID:19235719) MGI PMID:19235719 NCBI chr13:97,661,905...97,678,640
Ensembl chr13:97,660,864...97,681,497 		JBrowse link
G TBX18 T-box transcription factor 18 enables ISO (MGI:3722519|PMID:17584735) BHF-UCL PMID:17584735 MGI:3722519 NCBI chr13:9,407,384...9,441,157
Ensembl chr13:9,411,004...9,439,642 		JBrowse link
G TBX20 T-box transcription factor 20 enables IEA Ensembl GO_REF:0000107 NCBI chr21:23,166,020...23,222,416
Ensembl chr21:23,166,109...23,224,657 		JBrowse link
G TBX3 T-box transcription factor 3 enables ISO (MGI:5448510|PMID:22164283) BHF-UCL PMID:22164283 MGI:5448510 NCBI chr11:109,952,100...109,966,328
Ensembl chr11:109,952,054...109,965,065 		JBrowse link
G TBX5 T-box transcription factor 5 enables ISO (PMID:11431700) BHF-UCL PMID:11431700 NCBI chr11:109,638,694...109,696,619
Ensembl chr11:109,638,715...109,689,177 		JBrowse link
G TBX6 T-box transcription factor 6 enables ISO (MGI:5448510|PMID:22164283) BHF-UCL PMID:22164283 MGI:5448510 NCBI chr 5:26,566,673...26,573,258
Ensembl chr 5:26,567,700...26,572,820 		JBrowse link
G TBXT T-box transcription factor T enables IEA Ensembl GO_REF:0000107 NCBI chr13:93,854,086...93,864,910
Ensembl chr13:93,855,534...93,864,507 		JBrowse link
G TCERG1 transcription elongation regulator 1 enables ISO (PMID:20956529) BHF-UCL PMID:20956529 NCBI chr23:49,026,214...49,089,996
Ensembl chr23:49,026,250...49,090,063 		JBrowse link
G TCF23 transcription factor 23 enables IEA Ensembl GO_REF:0000107 NCBI chr14:80,459,590...80,466,272
Ensembl chr14:80,461,732...80,465,499 		JBrowse link
G TCF3 transcription factor 3 enables ISO (PMID:10652346)
(MGI:4362015|PMID:11812799)		 ARUK-UCL
BHF-UCL		 PMID:10652346 PMID:11812799 MGI:4362015 NCBI chr 6:1,393,147...1,440,515
Ensembl chr 6:1,393,107...1,440,479 		JBrowse link
G TCF7L2 transcription factor 7 like 2 enables ISO (PMID:19443654)
(PMID:17875931)
(PMID:16007074)
(PMID:16434966)		 BHF-UCL PMID:16007074 PMID:16434966 PMID:17875931 PMID:19443654 NCBI chr 9:105,828,834...106,047,810 JBrowse link
G TEAD3 TEA domain transcription factor 3 enables IEA Ensembl GO_REF:0000107 NCBI chr17:36,626,528...36,651,367
Ensembl chr17:36,637,113...36,651,752 		JBrowse link
G TFDP3 transcription factor Dp family member 3 enables IEA Ensembl GO_REF:0000107 NCBI chr  X:108,356,281...108,358,019
Ensembl chr  X:108,356,662...108,357,879 		JBrowse link
G TOX2 TOX high mobility group box family member 2 ISO RGD PMID:14764631 RGD:1302820 NCBI chr 2:19,747,852...19,902,892
Ensembl chr 2:19,747,857...19,902,828 		JBrowse link
G TP53 tumor protein p53 enables IEA Ensembl GO_REF:0000107 NCBI chr16:7,047,686...7,065,567
Ensembl chr16:7,045,146...7,066,223 		JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr26:39,489,925...39,595,096
Ensembl chr26:39,508,600...39,594,927 		JBrowse link
G TP73 tumor protein p73 enables IEA Ensembl GO_REF:0000107 NCBI chr20:127,958,002...128,035,792
Ensembl chr20:127,958,809...128,013,691 		JBrowse link
G TRIB1 tribbles pseudokinase 1 enables ISO (MGI:3760491|PMID:17724128)
(PMID:17724128)		 BHF-UCL PMID:17724128 MGI:3760491 NCBI chr 8:120,013,757...120,021,823
Ensembl chr 8:120,014,339...120,019,887 		JBrowse link
G TRIB2 tribbles pseudokinase 2 enables ISO (MGI:3722453|PMID:17576771) BHF-UCL PMID:17576771 MGI:3722453 NCBI chr14:94,887,152...94,913,219 JBrowse link
G TRIB2 tribbles pseudokinase 2 enables IEA Ensembl GO_REF:0000107 Ensembl chr14:94,903,597...94,912,033 JBrowse link
G TTC8 tetratricopeptide repeat domain 8 enables IEA Ensembl GO_REF:0000107 NCBI chr24:66,483,808...66,539,717
Ensembl chr24:66,483,864...66,539,142 		JBrowse link
G UBXN7 UBX domain protein 7 enables IEA Ensembl GO_REF:0000107 NCBI chr15:90,770,294...90,844,744
Ensembl chr15:90,771,109...90,841,953 		JBrowse link
G UHRF2 ubiquitin like with PHD and ring finger domains 2 enables IEA Ensembl GO_REF:0000107 NCBI chr12:73,010,697...73,106,163
Ensembl chr12:73,007,830...73,106,120 		JBrowse link
G WWP2 WW domain containing E3 ubiquitin protein ligase 2 enables ISO (PMID:19274063)
(PMID:21427722)
(MGI:4887340|PMID:15047715)		 BHF-UCL
MGI		 PMID:15047715 PMID:19274063 PMID:21427722 MGI:4887340 NCBI chr 5:57,465,559...57,676,224
Ensembl chr 5:57,465,441...57,644,461 		JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor enables IEA Ensembl GO_REF:0000107 NCBI chr22:50,088,019...50,121,584
Ensembl chr22:50,085,353...50,121,542 		JBrowse link
G ZBTB8A zinc finger and BTB domain containing 8A enables IEA Ensembl GO_REF:0000107 NCBI chr20:100,275,016...100,345,029
Ensembl chr20:100,275,390...100,339,445 		JBrowse link
G ZFPM1 zinc finger protein, FOG family member 1 enables IEA InterPro GO_REF:0000002 NCBI chr 5:73,832,527...73,909,231
Ensembl chr 5:73,864,461...73,909,049 		JBrowse link
G ZFPM2 zinc finger protein, FOG family member 2 enables IEA InterPro GO_REF:0000002 NCBI chr 8:100,138,867...100,620,355 JBrowse link
aryl hydrocarbon receptor binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHR aryl hydrocarbon receptor enables ISO (MGI:5547895|PMID:24001774) UniProt PMID:24001774 MGI:5547895 NCBI chr21:40,778,198...40,826,491
Ensembl chr21:40,778,218...40,826,478 		JBrowse link
G AIP aryl hydrocarbon receptor interacting protein enables ISO (PMID:9083006) MGI PMID:9083006 NCBI chr 1:6,774,648...6,783,095
Ensembl chr 1:6,773,364...6,783,318 		JBrowse link
G ARNT aryl hydrocarbon receptor nuclear translocator enables IEA Ensembl GO_REF:0000107
G ARNT2 aryl hydrocarbon receptor nuclear translocator 2 enables IEA Ensembl GO_REF:0000107 NCBI chr26:2,790,059...2,990,760
Ensembl chr26:2,794,372...2,990,814 		JBrowse link
G BMAL1 basic helix-loop-helix ARNT like 1 enables ISO (PMID:9079689) BHF-UCL PMID:9079689 NCBI chr 1:51,430,670...51,540,344
Ensembl chr 1:51,431,180...51,462,674 		JBrowse link
G NCOA2 nuclear receptor coactivator 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:65,855,232...66,151,733
Ensembl chr 8:65,855,235...66,040,947 		JBrowse link
G TAF4 TATA-box binding protein associated factor 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:2,167,585...2,252,383
Ensembl chr 2:2,167,341...2,252,156 		JBrowse link
G TAF6 TATA-box binding protein associated factor 6 enables ISO (PMID:15641800) CAFA PMID:15641800 NCBI chr28:12,958,555...12,971,100
Ensembl chr28:12,963,609...12,973,368 		JBrowse link
G TBP TATA-box binding protein enables ISO (PMID:15641800) CAFA PMID:15641800 NCBI chr13:97,661,905...97,678,640
Ensembl chr13:97,660,864...97,681,497 		JBrowse link
NF-kappaB binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP8 A-kinase anchoring protein 8 enables ISO (MGI:5763364|PMID:19531803) UniProt PMID:19531803 MGI:5763364 NCBI chr 6:13,965,014...13,987,586 JBrowse link
G ANKRD42 ankyrin repeat domain 42 enables ISO (PMID:20547855) MGI PMID:20547855 NCBI chr 1:74,388,272...74,569,529 JBrowse link
G ANKRD42 ankyrin repeat domain 42 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr 1:74,389,237...74,444,831 JBrowse link
G ANKRD55 ankyrin repeat domain 55 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 4:52,334,397...52,466,161
Ensembl chr 4:52,334,914...52,421,715 		JBrowse link
G ANXA4 annexin A4 enables ISO (PMID:20237821) BHF-UCL PMID:20237821 NCBI chr14:37,297,960...37,384,187
Ensembl chr14:37,297,652...37,344,884 		JBrowse link
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 ISO RGD PMID:17602955 RGD:2315672 NCBI chr29:20,978,878...20,981,393 JBrowse link
G BCL10 BCL10 immune signaling adaptor enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:48,073,489...48,084,635
Ensembl chr20:48,073,800...48,085,136 		JBrowse link
G BRMS1 BRMS1 transcriptional repressor and anoikis regulator enables IEA Ensembl GO_REF:0000107 NCBI chr 1:7,932,276...7,940,144
Ensembl chr 1:7,932,316...7,940,143 		JBrowse link
G CDK5RAP3 CDK5 regulatory subunit associated protein 3 enables ISO (PMID:17785205) UniProt PMID:17785205 NCBI chr16:68,367,591...68,382,000
Ensembl chr16:68,370,483...68,382,022 		JBrowse link
G COMMD6 COMM domain containing 6 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 3:54,625,390...54,636,201
Ensembl chr 3:54,623,834...54,636,262 		JBrowse link
G COMMD7 COMM domain containing 7 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 2:37,078,210...37,112,012
Ensembl chr 2:37,077,735...37,111,556 		JBrowse link
G DNAJA3 DnaJ heat shock protein family (Hsp40) member A3 enables ISO (PMID:15601829) UniProt PMID:15601829 NCBI chr 5:4,109,612...4,139,789 JBrowse link
G EP300 E1A binding protein p300 enables ISO
IEA		 RGD
Ensembl		 PMID:17252537 GO_REF:0000107 RGD:2312270 NCBI chr19:23,634,132...23,726,095
Ensembl chr19:23,634,571...23,724,979 		JBrowse link
G FAF1 Fas associated factor 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:81,978,590...82,475,130
Ensembl chr20:81,978,966...82,477,842 		JBrowse link
G GSK3B glycogen synthase kinase 3 beta enables IEA Ensembl GO_REF:0000107 NCBI chr22:60,732,449...61,002,735
Ensembl chr22:60,733,465...60,997,239 		JBrowse link
G HDAC1 histone deacetylase 1 enables ISO (PMID:11931769), (PMID:17785205) UniProt PMID:11931769 PMID:17785205 NCBI chr20:100,529,782...100,575,953
Ensembl chr20:100,530,369...100,558,556 		JBrowse link
G HDAC2 histone deacetylase 2 enables ISO (PMID:17785205) UniProt PMID:17785205 NCBI chr13:59,873,248...59,904,542
Ensembl chr13:59,873,767...59,905,742 		JBrowse link
G HDAC3 histone deacetylase 3 enables ISO (PMID:17785205) UniProt PMID:17785205 NCBI chr23:44,246,296...44,263,127 JBrowse link
G HIF1AN hypoxia inducible factor 1 subunit alpha inhibitor enables IEA Ensembl GO_REF:0000107 NCBI chr 9:93,557,143...93,569,301
Ensembl chr 9:93,557,055...93,569,035 		JBrowse link
G LOC103221743 heat shock 70 kDa protein 1A ISO RGD PMID:16135962 RGD:1598788 NCBI chr17:40,191,695...40,194,459
Ensembl chr17:40,203,936...40,205,858 		JBrowse link
G MTDH metadherin enables IEA TreeGrafter GO_REF:0000118 NCBI chr 8:92,563,480...92,641,874
Ensembl chr 8:92,563,550...92,640,231 		JBrowse link
G NFKBIA NFKB inhibitor alpha enables ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:16135962 GO_REF:0000107 GO_REF:0000118 RGD:1598788 NCBI chr24:12,211,619...12,216,185
Ensembl chr24:12,210,281...12,214,854 		JBrowse link
G NFKBID NFKB inhibitor delta enables ISO (PMID:11931770) MGI PMID:11931770 NCBI chr 6:30,800,122...30,812,991
Ensembl chr 6:30,799,204...30,811,141 		JBrowse link
G NFKBIE NFKB inhibitor epsilon enables IEA TreeGrafter GO_REF:0000118 NCBI chr17:27,901,990...27,909,983
Ensembl chr17:27,902,389...27,910,440 		JBrowse link
G NOTCH2 notch receptor 2 enables ISO (MGI:3814108|PMID:18710934) UniProt PMID:18710934 MGI:3814108 NCBI chr20:13,712,140...13,871,777
Ensembl chr20:13,712,292...13,871,784 		JBrowse link
G NPM1 nucleophosmin 1 enables IEA Ensembl GO_REF:0000107 NCBI chr23:73,555,020...73,575,910
Ensembl chr23:73,555,260...73,575,925 		JBrowse link
G PDCD11 programmed cell death 11 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:96,442,214...96,493,320
Ensembl chr 9:96,442,237...96,493,318 		JBrowse link
G PIAS3 protein inhibitor of activated STAT 3 enables ISO (PMID:15140884) UniProt PMID:15140884 NCBI chr20:12,884,475...12,902,014
Ensembl chr20:12,885,205...12,902,243 		JBrowse link
G PPARD peroxisome proliferator activated receptor delta ISO RGD PMID:15728586 RGD:1580656 NCBI chr17:36,695,546...36,779,554
Ensembl chr17:36,695,494...36,779,577 		JBrowse link
G PSMA6 proteasome 20S subunit alpha 6 enables ISO (PMID:14743216) BHF-UCL PMID:14743216 NCBI chr24:12,099,804...12,127,477
Ensembl chr24:12,099,937...12,127,309 		JBrowse link
G RBM12 RNA binding motif protein 12 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:56,552,817...56,590,661
Ensembl chr 2:56,551,035...56,590,691 		JBrowse link
G RELA RELA proto-oncogene, NF-kB subunit enables ISO (PMID:8441377) UniProt PMID:8441377 NCBI chr 1:8,576,059...8,585,561
Ensembl chr 1:8,576,542...8,586,516 		JBrowse link
G RNF25 ring finger protein 25 enables IEA Ensembl GO_REF:0000107 NCBI chr10:104,568,405...104,575,900
Ensembl chr10:104,568,361...104,575,819 		JBrowse link
G SETD6 SET domain containing 6, protein lysine methyltransferase enables ISO (PMID:21131967) UniProt PMID:21131967 NCBI chr 5:44,454,844...44,458,897
Ensembl chr 5:44,455,311...44,458,433 		JBrowse link
G TAF4B TATA-box binding protein associated factor 4b enables IEA Ensembl GO_REF:0000107 NCBI chr18:54,198,730...54,357,101
Ensembl chr18:54,200,414...54,356,611 		JBrowse link
G TP53BP2 tumor protein p53 binding protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chr25:5,774,037...5,841,620
Ensembl chr25:5,774,063...5,841,709 		JBrowse link
NFAT protein binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXP3 forkhead box P3 enables ISO (PMID:16873067), (PMID:21458306) UniProt PMID:16873067 PMID:21458306 NCBI chr  X:46,349,890...46,365,133 JBrowse link
G GATA4 GATA binding protein 4 ISO RGD PMID:22198280 RGD:5687133 NCBI chr 8:7,348,145...7,432,574
Ensembl chr 8:7,349,660...7,400,562 		JBrowse link
G GATA6 GATA binding protein 6 enables ISO (PMID:11889139) UniProt PMID:11889139 NCBI chr18:58,312,328...58,345,472
Ensembl chr18:58,311,482...58,343,746 		JBrowse link
G LOC103223491 peroxisome proliferator-activated receptor alpha ISO RGD PMID:22198280 RGD:5687133 NCBI chr19:28,614,892...28,709,272
Ensembl chr19:28,615,413...28,708,763 		JBrowse link
G MAPK14 mitogen-activated protein kinase 14 enables IEA Ensembl GO_REF:0000107 NCBI chr17:36,012,164...36,095,542
Ensembl chr17:36,014,454...36,095,138 		JBrowse link
G SPI1 Spi-1 proto-oncogene enables ISO (MGI:5306313|PMID:15304486) BHF-UCL PMID:15304486 MGI:5306313 NCBI chr 1:17,935,037...17,961,638
Ensembl chr 1:17,935,922...17,961,717 		JBrowse link
nuclear androgen receptor binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AR androgen receptor ISO RGD PMID:9710597 RGD:69969 NCBI chr  X:57,380,587...57,553,613
Ensembl chr  X:57,380,611...57,546,776 		JBrowse link
G ARID5A AT-rich interaction domain 5A enables IEA Ensembl GO_REF:0000107 NCBI chr14:876,508...892,267
Ensembl chr14:876,562...892,166 		JBrowse link
G CALR calreticulin enables ISO (PMID:8107809) BHF-UCL PMID:8107809 NCBI chr 6:11,618,691...11,624,299
Ensembl chr 6:11,618,396...11,623,792 		JBrowse link
G DAXX death domain associated protein enables ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:15350595 GO_REF:0000107 GO_REF:0000118 RGD:1358129 NCBI chr17:38,754,227...38,758,714
Ensembl chr17:38,754,280...38,759,071 		JBrowse link
G DDX5 DEAD-box helicase 5 enables IEA Ensembl GO_REF:0000107 NCBI chr16:56,766,669...56,773,767
Ensembl chr16:56,767,186...56,773,464 		JBrowse link
G EP300 E1A binding protein p300 enables IEA Ensembl GO_REF:0000107 NCBI chr19:23,634,132...23,726,095
Ensembl chr19:23,634,571...23,724,979 		JBrowse link
G FOXH1 forkhead box H1 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:138,685,137...138,688,451
Ensembl chr 8:138,685,626...138,687,144 		JBrowse link
G FOXP1 forkhead box P1 enables IEA Ensembl GO_REF:0000107 NCBI chr22:31,907,941...32,538,294
Ensembl chr22:31,912,460...32,154,502 		JBrowse link
G FOXP2 forkhead box P2 ISO RGD PMID:25247470 RGD:11536003 NCBI chr21:82,799,147...83,392,568
Ensembl chr21:83,129,308...83,389,483 		JBrowse link
G KDM1A lysine demethylase 1A enables ISO (PMID:16079795) UniProt PMID:16079795 NCBI chr20:109,592,761...109,657,885
Ensembl chr20:109,593,074...109,657,839 		JBrowse link
G KDM3A lysine demethylase 3A enables IEA Ensembl GO_REF:0000107 NCBI chr14:20,668,215...20,721,854
Ensembl chr14:20,668,821...20,720,759 		JBrowse link
G KDM4C lysine demethylase 4C enables IEA Ensembl GO_REF:0000107 NCBI chr12:72,346,194...72,763,040
Ensembl chr12:72,347,071...72,761,666 		JBrowse link
G NCOA3 nuclear receptor coactivator 3 ISO RGD PMID:17223690 RGD:5688284 NCBI chr 2:16,270,218...16,423,381
Ensembl chr 2:16,273,717...16,423,318 		JBrowse link
G NSD1 nuclear receptor binding SET domain protein 1 enables ISO (PMID:11509567) UniProt PMID:11509567 NCBI chr23:79,140,148...79,309,579
Ensembl chr23:79,141,114...79,304,820 		JBrowse link
G PARK7 Parkinsonism associated deglycase enables IEA Ensembl GO_REF:0000107 NCBI chr20:123,776,084...123,808,031
Ensembl chr20:123,776,297...123,798,434 		JBrowse link
G PIAS2 protein inhibitor of activated STAT 2 enables ISO PMID:9920921 MGI
RGD		 PMID:9920921 PMID:11117529 RGD:2303126 RGD:70792 NCBI chr18:33,967,894...34,075,824
Ensembl chr18:33,967,999...34,067,910 		JBrowse link
G PKN1 protein kinase N1 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:13,088,060...13,130,848
Ensembl chr 6:13,082,132...13,130,897 		JBrowse link
G PRKCB protein kinase C beta enables ISO (PMID:20228790) UniProt PMID:20228790 NCBI chr 5:21,558,608...21,940,536
Ensembl chr 5:21,558,441...21,943,864 		JBrowse link
G PRMT2 protein arginine methyltransferase 2 enables ISO (PMID:17587566) UniProt PMID:17587566 NCBI chr 2:90,225,051...90,256,541
Ensembl chr 2:90,225,346...90,256,558 		JBrowse link
G PSMC3IP PSMC3 interacting protein ISO RGD PMID:11739747 RGD:628392 NCBI chr16:63,709,351...63,715,338
Ensembl chr16:63,709,982...63,714,804 		JBrowse link
G RNF14 ring finger protein 14 enables IEA Ensembl GO_REF:0000107 NCBI chr23:44,602,152...44,623,711
Ensembl chr23:44,602,783...44,623,912 		JBrowse link
G RNF4 ring finger protein 4 ISO RGD PMID:9710597 RGD:69969 NCBI chr27:46,245,786...46,290,671 JBrowse link
G RNF6 ring finger protein 6 enables ISO (PMID:19345326) UniProt PMID:19345326 NCBI chr 3:5,461,053...5,471,268
Ensembl chr 3:5,462,126...5,468,555 		JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 enables ISO (PMID:18487222) BHF-UCL PMID:18487222 NCBI chr 6:9,943,162...10,044,476 JBrowse link
G SNW1 SNW domain containing 1 enables ISO (PMID:23566155) CAFA PMID:23566155 NCBI chr24:54,976,597...55,020,051
Ensembl chr24:54,977,083...55,019,988 		JBrowse link
G TCF21 transcription factor 21 enables IEA Ensembl GO_REF:0000107 NCBI chr13:39,607,179...39,610,336
Ensembl chr13:39,607,182...39,610,388 		JBrowse link
G TGFB1I1 transforming growth factor beta 1 induced transcript 1 enables ISO (PMID:10075738) UniProt PMID:10075738 NCBI chr 5:28,172,246...28,178,265 JBrowse link
G TMF1 TATA element modulatory factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr22:30,048,269...30,078,600
Ensembl chr22:30,045,685...30,078,414 		JBrowse link
G TRIM68 tripartite motif containing 68 enables ISO (PMID:18451177) UniProt PMID:18451177 NCBI chr 1:62,270,614...62,280,241 JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 enables IEA Ensembl GO_REF:0000107 NCBI chr16:53,096,027...53,133,828
Ensembl chr16:53,096,023...53,135,010 		JBrowse link
G ZBTB7A zinc finger and BTB domain containing 7A enables IEA Ensembl GO_REF:0000107 NCBI chr 6:3,802,171...3,824,552
Ensembl chr 6:3,801,046...3,812,884 		JBrowse link
nuclear estrogen receptor binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARID5A AT-rich interaction domain 5A enables IEA Ensembl GO_REF:0000107 NCBI chr14:876,508...892,267
Ensembl chr14:876,562...892,166 		JBrowse link
G ARRB1 arrestin beta 1 ISO RGD PMID:19339617 RGD:5509970 NCBI chr 1:66,489,358...66,580,167
Ensembl chr 1:66,490,102...66,580,154 		JBrowse link
G CCDC62 coiled-coil domain containing 62 enables IEA Ensembl GO_REF:0000107 NCBI chr11:118,112,517...118,166,571
Ensembl chr11:118,113,620...118,163,128 		JBrowse link
G CNOT1 CCR4-NOT transcription complex subunit 1 enables ISO (PMID:16778766) UniProt PMID:16778766 NCBI chr 5:44,460,025...44,567,843
Ensembl chr 5:44,455,311...44,567,815 		JBrowse link
G CTNNB1 catenin beta 1 enables IEA Ensembl GO_REF:0000107 NCBI chr22:2,679,488...2,725,034
Ensembl chr22:2,684,022...2,723,949 		JBrowse link
G DCAF1 DDB1 and CUL4 associated factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr22:12,736,784...12,843,762
Ensembl chr22:12,739,665...12,823,363 		JBrowse link
G DCAF13 DDB1 and CUL4 associated factor 13 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:98,271,304...98,297,950 JBrowse link
G DDX54 DEAD-box helicase 54 enables IEA Ensembl GO_REF:0000107 NCBI chr11:108,407,623...108,437,188
Ensembl chr11:108,404,719...108,437,168 		JBrowse link
G DNAAF4 dynein axonemal assembly factor 4 enables ISO (PMID:19423554) UniProt PMID:19423554 RGD:8553436 NCBI chr26:27,946,092...28,024,495 JBrowse link
G DNAAF4 dynein axonemal assembly factor 4 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr26:27,960,224...28,013,105 JBrowse link
G DNMT1 DNA methyltransferase 1 ISO RGD PMID:19683557 RGD:8694315 NCBI chr 6:9,199,006...9,263,890
Ensembl chr 6:9,199,003...9,263,607 		JBrowse link
G ESR1 estrogen receptor 1 enables ISO (PMID:9841876) CAFA PMID:9841876 NCBI chr13:79,153,418...79,554,552
Ensembl chr13:79,270,265...79,554,549 		JBrowse link
G FOXL2 forkhead box L2 enables ISO (MGI:4429740|PMID:20005806), (MGI:4430655|PMID:19797124) UniProt PMID:19797124 PMID:20005806 MGI:4429740 MGI:4430655 NCBI chr15:51,595,806...51,598,124
Ensembl chr15:51,596,218...51,597,348 		JBrowse link
G FUS FUS RNA binding protein ISO RGD PMID:9440806 RGD:9685715 NCBI chr 5:27,870,456...27,881,563
Ensembl chr 5:27,870,330...27,882,145 		JBrowse link
G GRM1 glutamate metabotropic receptor 1 ISO RGD PMID:18948402 RGD:4892069 NCBI chr13:25,380,855...25,816,945 JBrowse link
G HSD17B10 hydroxysteroid 17-beta dehydrogenase 10 ISO RGD PMID:19422801 RGD:4890964 NCBI chr  X:49,568,206...49,571,356
Ensembl chr  X:49,567,267...49,571,292 		JBrowse link
G ISL1 ISL LIM homeobox 1 enables ISO PMID:11043578 BHF-UCL
RGD		 PMID:11043578 RGD:8554127 NCBI chr 4:47,665,861...47,678,631
Ensembl chr 4:47,666,536...47,677,552 		JBrowse link
G LATS1 large tumor suppressor kinase 1 enables IEA Ensembl GO_REF:0000107 NCBI chr13:21,901,153...21,966,227
Ensembl chr13:21,919,280...21,967,117 		JBrowse link
G LCOR ligand dependent nuclear receptor corepressor enables IEA Ensembl GO_REF:0000107 NCBI chr 9:90,009,449...90,157,340
Ensembl chr 9:90,152,909...90,156,646 		JBrowse link
G LEF1 lymphoid enhancer binding factor 1 enables ISO (PMID:18794125) UniProt PMID:18794125 NCBI chr 7:55,974,770...56,096,214
Ensembl chr 7:55,990,621...56,094,110 		JBrowse link
G LOC103245755 WW domain-binding protein 2-like enables IEA Ensembl GO_REF:0000107 NCBI chr26:40,120,432...40,122,225 JBrowse link
G MED1 mediator complex subunit 1 enables IEA Ensembl GO_REF:0000107 NCBI chr16:66,719,393...66,764,902
Ensembl chr16:66,719,423...66,762,896 		JBrowse link
G MMS19 MMS19 homolog, cytosolic iron-sulfur assembly component enables IEA Ensembl GO_REF:0000107 NCBI chr 9:90,629,148...90,670,113
Ensembl chr 9:90,629,511...90,669,019 		JBrowse link
G NCOA1 nuclear receptor coactivator 1 enables ISO (PMID:18563714) RGD
ParkinsonsUK-UCL		 PMID:18563714 PMID:19460436 RGD:5688174 NCBI chr14:82,898,368...83,028,137
Ensembl chr14:82,897,348...83,013,589 		JBrowse link
G NCOA2 nuclear receptor coactivator 2 ISO RGD PMID:20678994 RGD:5688148 NCBI chr 8:65,855,232...66,151,733
Ensembl chr 8:65,855,235...66,040,947 		JBrowse link
G NCOA3 nuclear receptor coactivator 3 ISO RGD PMID:11818503 RGD:634396 NCBI chr 2:16,270,218...16,423,381
Ensembl chr 2:16,273,717...16,423,318 		JBrowse link
G NCOA6 nuclear receptor coactivator 6 ISO RGD PMID:10866662 RGD:633378 NCBI chr 2:39,013,364...39,129,723
Ensembl chr 2:39,013,232...39,129,658 		JBrowse link
G NCOR1 nuclear receptor corepressor 1 ISO RGD PMID:19460436 RGD:5688174 NCBI chr16:15,442,315...15,629,411
Ensembl chr16:15,462,640...15,628,512 		JBrowse link
G NKX3-1 NK3 homeobox 1 enables ISO (PMID:18794125) UniProt PMID:18794125 NCBI chr 8:21,792,069...21,797,258
Ensembl chr 8:21,791,422...21,796,319 		JBrowse link
G NRIP1 nuclear receptor interacting protein 1 enables ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:19460436 GO_REF:0000107 GO_REF:0000118 RGD:5688174 NCBI chr 2:77,480,398...77,583,985
Ensembl chr 2:77,577,029...77,580,496 		JBrowse link
G NSD1 nuclear receptor binding SET domain protein 1 enables ISO (MGI:1267129|PMID:9628876) UniProt PMID:9628876 MGI:1267129 NCBI chr23:79,140,148...79,309,579
Ensembl chr23:79,141,114...79,304,820 		JBrowse link
G PADI2 peptidyl arginine deiminase 2 enables IEA Ensembl GO_REF:0000107 NCBI chr20:115,465,098...115,520,772
Ensembl chr20:115,465,338...115,520,828 		JBrowse link
G PAGR1 PAXIP1 associated glutamate rich protein 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:26,833,333...26,837,655
Ensembl chr 5:26,833,675...26,837,640 		JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 ISO RGD PMID:23493398 RGD:10413906 NCBI chr25:3,350,798...3,405,040 JBrowse link
G PCNA proliferating cell nuclear antigen ISO RGD PMID:19683557 RGD:8694315 NCBI chr 2:32,936,600...32,953,635
Ensembl chr 2:32,948,196...32,953,991 		JBrowse link
G PIAS2 protein inhibitor of activated STAT 2 ISO RGD PMID:11117529 RGD:2303126 NCBI chr18:33,967,894...34,075,824
Ensembl chr18:33,967,999...34,067,910 		JBrowse link
G PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 ISO RGD PMID:16971528 RGD:1625219 NCBI chr 4:64,321,296...64,406,188
Ensembl chr 4:64,321,078...64,406,519 		JBrowse link
G PPARG peroxisome proliferator activated receptor gamma ISO RGD PMID:20689342 RGD:8553035 NCBI chr22:48,262,743...48,407,415
Ensembl chr22:48,275,600...48,407,418 		JBrowse link
G PPARGC1A PPARG coactivator 1 alpha ISO RGD PMID:18511507 RGD:4781450 NCBI chr27:25,882,385...26,563,530
Ensembl chr27:26,465,499...26,564,582 		JBrowse link
G PPARGC1B PPARG coactivator 1 beta enables IEA Ensembl GO_REF:0000107 NCBI chr23:52,337,802...52,462,553
Ensembl chr23:52,428,052...52,455,089 		JBrowse link
G PRMT2 protein arginine methyltransferase 2 enables ISO (PMID:17587566)
(PMID:12039952)		 UniProt PMID:12039952 PMID:17587566 NCBI chr 2:90,225,051...90,256,541
Ensembl chr 2:90,225,346...90,256,558 		JBrowse link
G PSMC3IP PSMC3 interacting protein ISO RGD PMID:11739747 RGD:628392 NCBI chr16:63,709,351...63,715,338
Ensembl chr16:63,709,982...63,714,804 		JBrowse link
G RNF4 ring finger protein 4 ISO RGD PMID:9710597 RGD:69969 NCBI chr27:46,245,786...46,290,671 JBrowse link
G SRARP steroid receptor associated and regulated protein enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:116,293,054...116,296,291
Ensembl chr20:116,293,000...116,295,874 		JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase ISO RGD PMID:14751567 RGD:1581138 NCBI chr 2:26,344,480...26,367,448
Ensembl chr 2:26,343,450...26,367,776 		JBrowse link
G STRN striatin enables IEA Ensembl GO_REF:0000107 NCBI chr14:70,437,593...70,563,631
Ensembl chr14:70,437,570...70,558,013 		JBrowse link
G TACC1 transforming acidic coiled-coil containing protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:36,752,966...36,871,609
Ensembl chr 8:36,774,647...36,866,586 		JBrowse link
G TAF10 TATA-box binding protein associated factor 10 enables ISO (PMID:7923369) UniProt PMID:7923369 NCBI chr 1:58,213,261...58,214,658
Ensembl chr 1:58,213,310...58,214,581 		JBrowse link
G TRIP4 thyroid hormone receptor interactor 4 enables IEA Ensembl GO_REF:0000107 NCBI chr26:19,065,934...19,133,489
Ensembl chr26:19,065,887...19,133,448 		JBrowse link
G WBP2 WW domain binding protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chr16:45,821,875...45,836,558
Ensembl chr16:45,821,967...45,835,530 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 enables IEA Ensembl GO_REF:0000107 NCBI chr16:53,096,027...53,133,828
Ensembl chr16:53,096,023...53,135,010 		JBrowse link
G ZNF366 zinc finger protein 366 enables IEA Ensembl GO_REF:0000107 NCBI chr 4:66,779,113...66,844,839
Ensembl chr 4:66,776,547...66,843,905 		JBrowse link
nuclear glucocorticoid receptor binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEBPB CCAAT enhancer binding protein beta ISO RGD PMID:20155810 RGD:4892121 NCBI chr 2:13,780,538...13,782,639
Ensembl chr 2:13,781,160...13,782,194 		JBrowse link
G EP300 E1A binding protein p300 ISO RGD PMID:17884810 RGD:2312268 NCBI chr19:23,634,132...23,726,095
Ensembl chr19:23,634,571...23,724,979 		JBrowse link
G ETS2 ETS proto-oncogene 2, transcription factor ISO RGD PMID:11279115 RGD:1300077 NCBI chr 2:82,751,196...82,770,051
Ensembl chr 2:82,757,930...82,770,165 		JBrowse link
G FKBP4 FKBP prolyl isomerase 4 enables IEA Ensembl GO_REF:0000107 NCBI chr11:2,860,932...2,869,885
Ensembl chr11:2,860,935...2,870,383 		JBrowse link
G FLT3 fms related receptor tyrosine kinase 3 ISO RGD PMID:18261979 RGD:2302206 NCBI chr 3:7,117,579...7,222,600
Ensembl chr 3:7,116,947...7,222,849 		JBrowse link
G IPO13 importin 13 ISO RGD PMID:16809634 RGD:4892097 NCBI chr20:88,838,182...88,859,435
Ensembl chr20:88,837,657...88,859,475 		JBrowse link
G LOC103243413 signal transducer and activator of transcription 5B enables ISO (PMID:12552091) BHF-UCL PMID:12552091 NCBI chr16:63,997,486...64,070,392
Ensembl chr16:63,997,441...64,070,445 		JBrowse link
G NCOA2 nuclear receptor coactivator 2 ISO RGD PMID:9742117 RGD:633360 NCBI chr 8:65,855,232...66,151,733
Ensembl chr 8:65,855,235...66,040,947 		JBrowse link
G NCOA6 nuclear receptor coactivator 6 ISO RGD PMID:10866662 RGD:633378 NCBI chr 2:39,013,364...39,129,723
Ensembl chr 2:39,013,232...39,129,658 		JBrowse link
G NCOR2 nuclear receptor corepressor 2 ISO RGD PMID:15870285 RGD:5688307 NCBI chr11:119,675,363...119,917,059
Ensembl chr11:119,676,345...119,917,000 		JBrowse link
G NR4A1 nuclear receptor subfamily 4 group A member 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:48,208,354...48,232,857
Ensembl chr11:48,208,587...48,233,063 		JBrowse link
G NR4A2 nuclear receptor subfamily 4 group A member 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr10:41,715,092...41,724,411
Ensembl chr10:41,715,086...41,723,685 		JBrowse link
G NR4A3 nuclear receptor subfamily 4 group A member 3 enables IEA TreeGrafter GO_REF:0000118 NCBI chr12:39,568,085...39,611,704
Ensembl chr12:39,567,852...39,606,837 		JBrowse link
G NRIP1 nuclear receptor interacting protein 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:77,480,398...77,583,985
Ensembl chr 2:77,577,029...77,580,496 		JBrowse link
G PIAS2 protein inhibitor of activated STAT 2 ISO RGD PMID:11117529 RGD:2303126 NCBI chr18:33,967,894...34,075,824
Ensembl chr18:33,967,999...34,067,910 		JBrowse link
G PSMC3IP PSMC3 interacting protein ISO RGD PMID:11739747 RGD:628392 NCBI chr16:63,709,351...63,715,338
Ensembl chr16:63,709,982...63,714,804 		JBrowse link
G RARA retinoic acid receptor alpha enables IEA TreeGrafter GO_REF:0000118 NCBI chr16:65,817,849...65,866,862
Ensembl chr16:65,817,757...65,866,878 		JBrowse link
G RARB retinoic acid receptor beta enables IEA TreeGrafter GO_REF:0000118 NCBI chr15:69,851,447...70,266,215
Ensembl chr15:70,096,117...70,264,905 		JBrowse link
G RARG retinoic acid receptor gamma enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:49,319,104...49,340,725
Ensembl chr11:49,319,839...49,328,656 		JBrowse link
G SMAD3 SMAD family member 3 enables ISO (PMID:12902338) CAFA PMID:12902338 NCBI chr26:16,319,959...16,446,472
Ensembl chr26:16,320,933...16,446,527 		JBrowse link
G STAT3 signal transducer and activator of transcription 3 ISO RGD PMID:20155810 RGD:4892121 NCBI chr16:63,877,884...63,957,894
Ensembl chr16:63,922,862...63,957,984 		JBrowse link
G TACC1 transforming acidic coiled-coil containing protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:36,752,966...36,871,609
Ensembl chr 8:36,774,647...36,866,586 		JBrowse link
G YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta enables IEA Ensembl GO_REF:0000107 NCBI chr19:14,825,963...14,839,668
Ensembl chr19:14,826,135...14,840,325 		JBrowse link
nuclear mineralocorticoid receptor binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMAD3 SMAD family member 3 enables ISO (PMID:12902338) CAFA PMID:12902338 NCBI chr26:16,319,959...16,446,472
Ensembl chr26:16,320,933...16,446,527 		JBrowse link
nuclear progesterone receptor binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRMT2 protein arginine methyltransferase 2 enables ISO (PMID:12039952) UniProt PMID:12039952 NCBI chr 2:90,225,051...90,256,541
Ensembl chr 2:90,225,346...90,256,558 		JBrowse link
G TRERF1 transcriptional regulating factor 1 enables ISO (PMID:17015480) ARUK-UCL PMID:17015480 NCBI chr17:29,700,505...29,927,247
Ensembl chr17:29,883,231...29,927,388 		JBrowse link
nuclear receptor binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN4 actinin alpha 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:33,290,639...33,373,059
Ensembl chr 6:33,290,622...33,374,693 		JBrowse link
G ARID1A AT-rich interaction domain 1A enables IEA Ensembl GO_REF:0000107 NCBI chr20:105,981,549...106,066,093
Ensembl chr20:105,981,290...106,065,672 		JBrowse link
G ASAH1 N-acylsphingosine amidohydrolase 1 enables ISO (PMID:22927646) UniProt PMID:22927646 NCBI chr 8:16,151,974...16,181,726
Ensembl chr 8:16,151,247...16,181,155 		JBrowse link
G BCAS3 BCAS3 microtubule associated cell migration factor enables ISO (PMID:17505058) UniProt PMID:17505058 NCBI chr16:31,912,523...32,620,308 JBrowse link
G BUD31 BUD31 homolog enables ISO (PMID:25091737) UniProt PMID:25091737 NCBI chr28:13,734,417...13,750,749
Ensembl chr28:13,733,391...13,749,692 		JBrowse link
G C1D C1D nuclear receptor corepressor enables IEA Ensembl GO_REF:0000107 NCBI chr14:39,019,972...39,043,109
Ensembl chr14:39,019,588...39,044,032 		JBrowse link
G CRX cone-rod homeobox enables ISO (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chr 6:41,125,912...41,133,478
Ensembl chr 6:41,126,125...41,132,951 		JBrowse link
G CRY1 cryptochrome circadian regulator 1 enables IEA Ensembl GO_REF:0000107 NCBI chr11:102,200,822...102,306,165
Ensembl chr11:102,204,224...102,306,182 		JBrowse link
G CRY2 cryptochrome circadian regulator 2 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:19,459,734...19,498,807
Ensembl chr 1:19,472,231...19,498,790 		JBrowse link
G CTNNB1 catenin beta 1 enables IEA Ensembl GO_REF:0000107 NCBI chr22:2,679,488...2,725,034
Ensembl chr22:2,684,022...2,723,949 		JBrowse link
G EP300 E1A binding protein p300 enables IEA Ensembl GO_REF:0000107 NCBI chr19:23,634,132...23,726,095
Ensembl chr19:23,634,571...23,724,979 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha enables IEA Ensembl GO_REF:0000107 NCBI chr24:38,873,830...38,927,657
Ensembl chr24:38,873,861...38,928,288 		JBrowse link
G ISL1 ISL LIM homeobox 1 enables ISO PMID:11043578 BHF-UCL PMID:11043578 RGD:8554127 NCBI chr 4:47,665,861...47,678,631
Ensembl chr 4:47,666,536...47,677,552 		JBrowse link
G JUND JunD proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:15860571 RGD:1600916 NCBI chr 6:16,754,553...16,756,458
Ensembl chr 6:16,755,247...16,756,290 		JBrowse link
G LOC103215546 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:53,170,987...53,172,360 JBrowse link
G LOC103215926 nuclear nucleic acid-binding protein C1D-like enables IEA Ensembl GO_REF:0000107 NCBI chr 9:51,752,321...51,753,110 JBrowse link
G LOC103239432 myoblast determination protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:47,250,927...47,254,572
Ensembl chr 1:47,251,551...47,253,284 		JBrowse link
G LRP2 LDL receptor related protein 2 enables ISO PMID:16143106 UniProt PMID:16143106 RGD:13210563 NCBI chr10:54,672,876...54,889,374
Ensembl chr10:54,711,517...54,889,208 		JBrowse link
G MED1 mediator complex subunit 1 enables IEA Ensembl GO_REF:0000107 NCBI chr16:66,719,393...66,764,902
Ensembl chr16:66,719,423...66,762,896 		JBrowse link
G NCOA1 nuclear receptor coactivator 1 enables ISO
IEA		 Pgr-A and Pgr-B RGD
TreeGrafter
InterPro
UniProt		 PMID:18566116 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 RGD:5688220 NCBI chr14:82,898,368...83,028,137
Ensembl chr14:82,897,348...83,013,589 		JBrowse link
G NCOA2 nuclear receptor coactivator 2 enables ISO
IEA		 Pgr-B RGD
TreeGrafter
UniProt
Ensembl
InterPro		 PMID:9742117 PMID:20678994 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 RGD:5688148 RGD:633360 NCBI chr 8:65,855,232...66,151,733
Ensembl chr 8:65,855,235...66,040,947 		JBrowse link
G NCOA3 nuclear receptor coactivator 3 enables IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr 2:16,270,218...16,423,381
Ensembl chr 2:16,273,717...16,423,318 		JBrowse link
G NCOA7 nuclear receptor coactivator 7 enables ISO (PMID:11971969) UniProt PMID:11971969 NCBI chr13:47,787,740...47,949,814
Ensembl chr13:47,786,841...47,935,770 		JBrowse link
G NCOR1 nuclear receptor corepressor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr16:15,442,315...15,629,411
Ensembl chr16:15,462,640...15,628,512 		JBrowse link
G NCOR2 nuclear receptor corepressor 2 ISO RGD PMID:15870285 RGD:5688307 NCBI chr11:119,675,363...119,917,059
Ensembl chr11:119,676,345...119,917,000 		JBrowse link
G NR0B1 nuclear receptor subfamily 0 group B member 1 enables ISO (PMID:11875111) UniProt PMID:11875111 NCBI chr  X:28,707,698...28,713,158
Ensembl chr  X:28,707,699...28,712,708 		JBrowse link
G NR1I2 nuclear receptor subfamily 1 group I member 2 enables IEA Ensembl GO_REF:0000107 NCBI chr22:61,005,404...61,043,016
Ensembl chr22:61,006,667...61,040,832 		JBrowse link
G NRBF2 nuclear receptor binding factor 2 ISO RGD PMID:10786636 RGD:61677 NCBI chr 9:68,150,245...68,173,388
Ensembl chr 9:68,151,057...68,159,455 		JBrowse link
G NRIP1 nuclear receptor interacting protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:77,480,398...77,583,985
Ensembl chr 2:77,577,029...77,580,496 		JBrowse link
G PER2 period circadian regulator 2 enables ISO (MGI:5302136|PMID:22170608)
(MGI:4429726|PMID:20159955)
(MGI:4881351|PMID:21035761)		 UniProt PMID:20159955 PMID:21035761 PMID:22170608 MGI:4429726 MGI:4881351 MGI:5302136 NCBI chr10:124,270,917...124,316,031
Ensembl chr10:124,269,543...124,315,904 		JBrowse link
G PPARGC1A PPARG coactivator 1 alpha enables IEA Ensembl GO_REF:0000107 NCBI chr27:25,882,385...26,563,530
Ensembl chr27:26,465,499...26,564,582 		JBrowse link
G PROX1 prospero homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chr25:15,533,546...15,592,834
Ensembl chr25:15,538,964...15,587,059 		JBrowse link
G SIRT1 sirtuin 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:63,463,059...63,497,893
Ensembl chr 9:63,462,389...63,497,867 		JBrowse link
G SLC30A9 solute carrier family 30 member 9 enables ISO (PMID:15988012) MGI PMID:15988012 NCBI chr27:8,263,287...8,367,549
Ensembl chr27:8,260,355...8,367,395 		JBrowse link
G SMAD3 SMAD family member 3 enables ISO (PMID:31023188) BHF-UCL PMID:31023188 NCBI chr26:16,319,959...16,446,472
Ensembl chr26:16,320,933...16,446,527 		JBrowse link
G SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 enables ISO (PMID:17363140)
(PMID:14701856)		 BHF-UCL
UniProt		 PMID:14701856 PMID:17363140 NCBI chr21:119,423,755...119,461,959
Ensembl chr21:119,423,885...119,460,038 		JBrowse link
G SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:65,539,138...65,559,810
Ensembl chr16:65,541,513...65,561,401 		JBrowse link
G SNW1 SNW domain containing 1 enables ISO (PMID:19934264) UniProt PMID:19934264 NCBI chr24:54,976,597...55,020,051
Ensembl chr24:54,977,083...55,019,988 		JBrowse link
G SRA1 steroid receptor RNA activator 1 ISO RGD PMID:12350225 RGD:628587 NCBI chr23:43,194,462...43,203,134
Ensembl chr23:43,194,693...43,202,057 		JBrowse link
G STAT1 signal transducer and activator of transcription 1 enables ISO (PMID:26504087) UniProt PMID:26504087 NCBI chr10:76,492,859...76,537,689
Ensembl chr10:76,492,533...76,533,393 		JBrowse link
G TACC1 transforming acidic coiled-coil containing protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:36,752,966...36,871,609
Ensembl chr 8:36,774,647...36,866,586 		JBrowse link
G TACC2 transforming acidic coiled-coil containing protein 2 enables ISO (PMID:15207008) MGI PMID:15207008 NCBI chr 9:114,781,581...114,987,838 JBrowse link
G TACC2 transforming acidic coiled-coil containing protein 2 enables IEA Ensembl GO_REF:0000107 Ensembl chr 9:114,819,756...114,988,029 JBrowse link
G TADA3 transcriptional adaptor 3 enables IEA Ensembl GO_REF:0000107 NCBI chr22:45,787,945...45,799,529
Ensembl chr22:45,786,012...45,798,019 		JBrowse link
G TAF1 TATA-box binding protein associated factor 1 enables ISO (PMID:20181722) ParkinsonsUK-UCL PMID:20181722 NCBI chr  X:61,167,743...61,269,000
Ensembl chr  X:61,167,589...61,268,839 		JBrowse link
G TCF7L2 transcription factor 7 like 2 enables ISO (PMID:12799378) BHF-UCL PMID:12799378 NCBI chr 9:105,828,834...106,047,810 JBrowse link
G TRIM24 tripartite motif containing 24 enables ISO (PMID:15322135) MGI PMID:15322135 NCBI chr21:107,166,180...107,291,897
Ensembl chr21:107,166,395...107,295,736 		JBrowse link
G TRIP4 thyroid hormone receptor interactor 4 enables IEA Ensembl GO_REF:0000107 NCBI chr26:19,065,934...19,133,489
Ensembl chr26:19,065,887...19,133,448 		JBrowse link
G UBA3 ubiquitin like modifier activating enzyme 3 ISO RGD PMID:11818503 RGD:634396 NCBI chr22:30,080,972...30,106,450
Ensembl chr22:30,080,863...30,106,419 		JBrowse link
nuclear retinoic acid receptor binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN4 actinin alpha 4 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:33,290,639...33,373,059
Ensembl chr 6:33,290,622...33,374,693 		JBrowse link
G ASXL1 ASXL transcriptional regulator 1 enables ISO (MGI:3688807|PMID:16606617) UniProt PMID:16606617 MGI:3688807 NCBI chr 2:36,735,449...36,810,447
Ensembl chr 2:36,735,830...36,812,387 		JBrowse link
G CNOT1 CCR4-NOT transcription complex subunit 1 enables ISO (PMID:16778766) UniProt PMID:16778766 NCBI chr 5:44,460,025...44,567,843
Ensembl chr 5:44,455,311...44,567,815 		JBrowse link
G CTBP2 C-terminal binding protein 2 enables ISO (PMID:23775127) MGI PMID:23775127 NCBI chr 9:117,635,124...117,806,908 JBrowse link
G HMGA1 high mobility group AT-hook 1 enables ISO (PMID:10428834) UniProt PMID:10428834 NCBI chr17:37,848,110...37,857,835
Ensembl chr17:37,849,412...37,853,880 		JBrowse link
G LOC103222918 melanoma antigen preferentially expressed in tumors enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:3,413,462...3,426,379
Ensembl chr19:3,414,838...3,426,422 		JBrowse link
G LRIF1 ligand dependent nuclear receptor interacting factor 1 enables IEA InterPro GO_REF:0000002 NCBI chr20:22,598,160...22,614,752
Ensembl chr20:22,598,124...22,617,024 		JBrowse link
G MED1 mediator complex subunit 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:66,719,393...66,764,902
Ensembl chr16:66,719,423...66,762,896 		JBrowse link
G MED25 mediator complex subunit 25 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:42,979,616...42,994,901
Ensembl chr 6:42,979,674...42,994,865 		JBrowse link
G NCOA1 nuclear receptor coactivator 1 ISO in presence of retinoic acid RGD PMID:15234273 RGD:5688233 NCBI chr14:82,898,368...83,028,137
Ensembl chr14:82,897,348...83,013,589 		JBrowse link
G NCOA2 nuclear receptor coactivator 2 ISO in presence of retinoic acid RGD PMID:15234273 RGD:5688233 NCBI chr 8:65,855,232...66,151,733
Ensembl chr 8:65,855,235...66,040,947 		JBrowse link
G NCOA6 nuclear receptor coactivator 6 ISO RGD PMID:10866662 RGD:633378 NCBI chr 2:39,013,364...39,129,723
Ensembl chr 2:39,013,232...39,129,658 		JBrowse link
G NCOR1 nuclear receptor corepressor 1 enables ISO in absence of retinoic acid
(PMID:8961273)		 RGD
MGI		 PMID:8961273 PMID:15234273 RGD:5688233 NCBI chr16:15,442,315...15,629,411
Ensembl chr16:15,462,640...15,628,512 		JBrowse link
G NCOR2 nuclear receptor corepressor 2 ISO in absence of retinoic acid RGD PMID:15234273 RGD:5688233 NCBI chr11:119,675,363...119,917,059
Ensembl chr11:119,676,345...119,917,000 		JBrowse link
G NR0B2 nuclear receptor subfamily 0 group B member 2 ISO RGD PMID:9003453 RGD:633448 NCBI chr20:105,850,328...105,853,076
Ensembl chr20:105,850,598...105,853,060 		JBrowse link
G NRIP1 nuclear receptor interacting protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:77,480,398...77,583,985
Ensembl chr 2:77,577,029...77,580,496 		JBrowse link
G NSD1 nuclear receptor binding SET domain protein 1 enables ISO (MGI:1267129|PMID:9628876) UniProt PMID:9628876 MGI:1267129 NCBI chr23:79,140,148...79,309,579
Ensembl chr23:79,141,114...79,304,820 		JBrowse link
G PRMT2 protein arginine methyltransferase 2 enables ISO (PMID:12039952) UniProt PMID:12039952 NCBI chr 2:90,225,051...90,256,541
Ensembl chr 2:90,225,346...90,256,558 		JBrowse link
G RXRA retinoid X receptor alpha ISO RGD PMID:15234273 RGD:5688233 NCBI chr12:3,704,129...3,814,707
Ensembl chr12:3,699,923...3,814,678 		JBrowse link
G RXRB retinoid X receptor beta ISO RGD PMID:1662118 RGD:729677 NCBI chr17:38,874,467...38,881,527
Ensembl chr17:38,874,681...38,881,653 		JBrowse link
G SNW1 SNW domain containing 1 enables ISO (PMID:11514567) UniProt PMID:11514567 NCBI chr24:54,976,597...55,020,051
Ensembl chr24:54,977,083...55,019,988 		JBrowse link
G TACC1 transforming acidic coiled-coil containing protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:36,752,966...36,871,609
Ensembl chr 8:36,774,647...36,866,586 		JBrowse link
nuclear retinoid X receptor binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARID5A AT-rich interaction domain 5A enables IEA Ensembl GO_REF:0000107 NCBI chr14:876,508...892,267
Ensembl chr14:876,562...892,166 		JBrowse link
G FUS FUS RNA binding protein ISO RGD PMID:9440806 RGD:9685715 NCBI chr 5:27,870,456...27,881,563
Ensembl chr 5:27,870,330...27,882,145 		JBrowse link
G HMGA1 high mobility group AT-hook 1 enables ISO (PMID:10428834) UniProt PMID:10428834 NCBI chr17:37,848,110...37,857,835
Ensembl chr17:37,849,412...37,853,880 		JBrowse link
G MED25 mediator complex subunit 25 enables IEA Ensembl GO_REF:0000107 NCBI chr 6:42,979,616...42,994,901
Ensembl chr 6:42,979,674...42,994,865 		JBrowse link
G NCOA1 nuclear receptor coactivator 1 ISO in presence of retinoic acid RGD PMID:15234273 RGD:5688233 NCBI chr14:82,898,368...83,028,137
Ensembl chr14:82,897,348...83,013,589 		JBrowse link
G NCOA2 nuclear receptor coactivator 2 ISO in presence of retinoic acid RGD PMID:15234273 RGD:5688233 NCBI chr 8:65,855,232...66,151,733
Ensembl chr 8:65,855,235...66,040,947 		JBrowse link
G NCOA6 nuclear receptor coactivator 6 ISO RGD PMID:10866662 RGD:633378 NCBI chr 2:39,013,364...39,129,723
Ensembl chr 2:39,013,232...39,129,658 		JBrowse link
G NCOR1 nuclear receptor corepressor 1 enables ISO in absence of retinoic acid
(PMID:7760852), (PMID:8961273)		 RGD
MGI		 PMID:7760852 PMID:8961273 PMID:15234273 RGD:5688233 NCBI chr16:15,442,315...15,629,411
Ensembl chr16:15,462,640...15,628,512 		JBrowse link
G NCOR2 nuclear receptor corepressor 2 ISO in absence of retinoic acid RGD PMID:15234273 RGD:5688233 NCBI chr11:119,675,363...119,917,059
Ensembl chr11:119,676,345...119,917,000 		JBrowse link
G NR0B2 nuclear receptor subfamily 0 group B member 2 ISO RGD PMID:9003453 RGD:633448 NCBI chr20:105,850,328...105,853,076
Ensembl chr20:105,850,598...105,853,060 		JBrowse link
G NR1H2 nuclear receptor subfamily 1 group H member 2 enables ISO
IEA		 RGD
Ensembl		 PMID:7892230 PMID:7971966 GO_REF:0000107 RGD:61674 RGD:729016 NCBI chr 6:43,438,428...43,445,190
Ensembl chr 6:43,437,950...43,446,063 		JBrowse link
G NR1H3 nuclear receptor subfamily 1 group H member 3 ISO RGD PMID:7935418 RGD:61675 NCBI chr 1:18,041,495...18,061,196
Ensembl chr 1:18,041,830...18,051,501 		JBrowse link
G NR1H4 nuclear receptor subfamily 1 group H member 4 enables IEA Ensembl GO_REF:0000107 NCBI chr11:95,792,428...95,877,989
Ensembl chr11:95,792,996...95,878,293 		JBrowse link
G NRIP1 nuclear receptor interacting protein 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:77,480,398...77,583,985
Ensembl chr 2:77,577,029...77,580,496 		JBrowse link
G NSD1 nuclear receptor binding SET domain protein 1 enables ISO (MGI:1267129|PMID:9628876) UniProt PMID:9628876 MGI:1267129 NCBI chr23:79,140,148...79,309,579
Ensembl chr23:79,141,114...79,304,820 		JBrowse link
G PPARG peroxisome proliferator activated receptor gamma enables ISO (PMID:9568715)
(PMID:19043829)		 BHF-UCL
CAFA		 PMID:9568715 PMID:19043829 NCBI chr22:48,262,743...48,407,415
Ensembl chr22:48,275,600...48,407,418 		JBrowse link
G RARB retinoic acid receptor beta ISO RGD PMID:15234273 RGD:5688233 NCBI chr15:69,851,447...70,266,215
Ensembl chr15:70,096,117...70,264,905 		JBrowse link
G RARG retinoic acid receptor gamma enables ISO (MGI:3799604|PMID:18439490) BHF-UCL PMID:18439490 MGI:3799604 NCBI chr11:49,319,104...49,340,725
Ensembl chr11:49,319,839...49,328,656 		JBrowse link
G SUMO2 small ubiquitin like modifier 2 ISO RGD PMID:19850744 RGD:8553529 NCBI chr16:46,479,399...46,495,591
Ensembl chr16:46,479,406...46,496,114 		JBrowse link
G TACC1 transforming acidic coiled-coil containing protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:36,752,966...36,871,609
Ensembl chr 8:36,774,647...36,866,586 		JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 enables ISO (PMID:7760852) MGI PMID:7760852 NCBI chr23:78,912,434...79,010,695
Ensembl chr23:78,911,234...79,010,264 		JBrowse link
G VDR vitamin D receptor enables IEA Ensembl GO_REF:0000107 NCBI chr11:44,062,198...44,126,295
Ensembl chr11:44,065,457...44,166,684 		JBrowse link
nuclear thyroid hormone receptor binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARID5A AT-rich interaction domain 5A enables IEA Ensembl GO_REF:0000107 NCBI chr14:876,508...892,267
Ensembl chr14:876,562...892,166 		JBrowse link
G BRD8 bromodomain containing 8 enables IEA Ensembl GO_REF:0000107 NCBI chr23:40,808,706...40,848,696
Ensembl chr23:40,827,739...40,849,030 		JBrowse link
G FUS FUS RNA binding protein ISO RGD PMID:9440806 RGD:9685715 NCBI chr 5:27,870,456...27,881,563
Ensembl chr 5:27,870,330...27,882,145 		JBrowse link
G GTF2B general transcription factor IIB enables IEA Ensembl GO_REF:0000107 NCBI chr20:44,527,150...44,566,398
Ensembl chr20:44,527,599...44,566,424 		JBrowse link
G GTF2H1 general transcription factor IIH subunit 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:46,573,907...46,620,443
Ensembl chr 1:46,573,393...46,609,261 		JBrowse link
G HR HR lysine demethylase and nuclear receptor corepressor ISO RGD PMID:11641275 RGD:1599577 NCBI chr 8:20,183,797...20,207,510
Ensembl chr 8:20,183,677...20,198,700 		JBrowse link
G MED1 mediator complex subunit 1 enables ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:10037764 GO_REF:0000107 GO_REF:0000118 RGD:5134969 NCBI chr16:66,719,393...66,764,902
Ensembl chr16:66,719,423...66,762,896 		JBrowse link
G MED12 mediator complex subunit 12 enables IEA Ensembl GO_REF:0000107 NCBI chr  X:60,915,796...60,939,220
Ensembl chr  X:60,915,703...60,937,677 		JBrowse link
G MED13 mediator complex subunit 13 enables IEA Ensembl GO_REF:0000107 NCBI chr16:33,163,032...33,285,385
Ensembl chr16:33,162,852...33,285,445 		JBrowse link
G MED16 mediator complex subunit 16 enables ISO (PMID:10198638) UniProt PMID:10198638 NCBI chr 6:617,998...638,340 JBrowse link
G MED17 mediator complex subunit 17 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:85,031,407...85,060,562
Ensembl chr 1:85,031,716...85,059,285 		JBrowse link
G MED24 mediator complex subunit 24 enables IEA Ensembl GO_REF:0000107 NCBI chr16:66,126,580...66,161,589
Ensembl chr16:66,127,548...66,161,585 		JBrowse link
G MED30 mediator complex subunit 30 enables ISO (PMID:10198638) UniProt PMID:10198638 NCBI chr 8:112,162,112...112,181,630
Ensembl chr 8:112,162,149...112,181,585 		JBrowse link
G MED4 mediator complex subunit 4 enables ISO (PMID:10198638) UniProt PMID:10198638 NCBI chr 3:25,990,203...26,009,472
Ensembl chr 3:25,990,159...26,009,438 		JBrowse link
G NCOA2 nuclear receptor coactivator 2 ISO RGD PMID:9742117 RGD:633360 NCBI chr 8:65,855,232...66,151,733
Ensembl chr 8:65,855,235...66,040,947 		JBrowse link
G NCOA6 nuclear receptor coactivator 6 enables ISO (PMID:11443112) RGD
UniProt		 PMID:10866662 PMID:11443112 RGD:633378 NCBI chr 2:39,013,364...39,129,723
Ensembl chr 2:39,013,232...39,129,658 		JBrowse link
G NCOR1 nuclear receptor corepressor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr16:15,442,315...15,629,411
Ensembl chr16:15,462,640...15,628,512 		JBrowse link
G NR0B2 nuclear receptor subfamily 0 group B member 2 ISO RGD PMID:9003453 RGD:633448 NCBI chr20:105,850,328...105,853,076
Ensembl chr20:105,850,598...105,853,060 		JBrowse link
G NSD1 nuclear receptor binding SET domain protein 1 enables ISO (MGI:1267129|PMID:9628876) UniProt PMID:9628876 MGI:1267129 NCBI chr23:79,140,148...79,309,579
Ensembl chr23:79,141,114...79,304,820 		JBrowse link
G PRMT2 protein arginine methyltransferase 2 enables ISO (PMID:12039952) UniProt PMID:12039952 NCBI chr 2:90,225,051...90,256,541
Ensembl chr 2:90,225,346...90,256,558 		JBrowse link
G PSMC3IP PSMC3 interacting protein ISO RGD PMID:11739747 RGD:628392 NCBI chr16:63,709,351...63,715,338
Ensembl chr16:63,709,982...63,714,804 		JBrowse link
G RXRA retinoid X receptor alpha ISO RGD PMID:10037764 RGD:5134969 NCBI chr12:3,704,129...3,814,707
Ensembl chr12:3,699,923...3,814,678 		JBrowse link
G RXRB retinoid X receptor beta ISO RGD PMID:1662118 RGD:729677 NCBI chr17:38,874,467...38,881,527
Ensembl chr17:38,874,681...38,881,653 		JBrowse link
G TACC1 transforming acidic coiled-coil containing protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 8:36,752,966...36,871,609
Ensembl chr 8:36,774,647...36,866,586 		JBrowse link
G TAF11 TATA-box binding protein associated factor 11 enables ISO (PMID:10744685) UniProt PMID:10744685 NCBI chr17:37,230,382...37,241,574 JBrowse link
G TAF7 TATA-box binding protein associated factor 7 enables IEA Ensembl GO_REF:0000107 NCBI chr23:43,938,202...43,940,486
Ensembl chr23:43,938,714...43,939,763 		JBrowse link
G THRAP3 thyroid hormone receptor associated protein 3 enables IEA Ensembl GO_REF:0000107 NCBI chr20:96,552,233...96,631,220
Ensembl chr20:96,552,077...96,599,904 		JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 enables ISO (PMID:7776974) UniProt PMID:7776974 NCBI chr10:115,789,978...115,946,978
Ensembl chr10:115,789,605...115,945,753 		JBrowse link
nuclear vitamin D receptor binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HR HR lysine demethylase and nuclear receptor corepressor ISO RGD PMID:12847098 RGD:1599578 NCBI chr 8:20,183,797...20,207,510
Ensembl chr 8:20,183,677...20,198,700 		JBrowse link
G MED1 mediator complex subunit 1 enables ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:17786964 GO_REF:0000107 GO_REF:0000118 RGD:5133443 NCBI chr16:66,719,393...66,764,902
Ensembl chr16:66,719,423...66,762,896 		JBrowse link
G NCOA6 nuclear receptor coactivator 6 ISO RGD PMID:10866662 RGD:633378 NCBI chr 2:39,013,364...39,129,723
Ensembl chr 2:39,013,232...39,129,658 		JBrowse link
G RXRA retinoid X receptor alpha enables ISO (PMID:17426122) BHF-UCL PMID:17426122 NCBI chr12:3,704,129...3,814,707
Ensembl chr12:3,699,923...3,814,678 		JBrowse link
G RXRB retinoid X receptor beta ISO RGD PMID:1662118 RGD:729677 NCBI chr17:38,874,467...38,881,527
Ensembl chr17:38,874,681...38,881,653 		JBrowse link
G SNW1 SNW domain containing 1 enables ISO (PMID:12529369) UniProt PMID:12529369 NCBI chr24:54,976,597...55,020,051
Ensembl chr24:54,977,083...55,019,988 		JBrowse link
G TAF11 TATA-box binding protein associated factor 11 enables ISO (PMID:10744685) UniProt PMID:10744685 NCBI chr17:37,230,382...37,241,574 JBrowse link
G TAF7 TATA-box binding protein associated factor 7 enables IEA Ensembl GO_REF:0000107 NCBI chr23:43,938,202...43,940,486
Ensembl chr23:43,938,714...43,939,763 		JBrowse link
G TOB2 transducer of ERBB2, 2 enables ISO (PMID:18358842) MGI PMID:18358842 NCBI chr19:23,975,676...23,985,701
Ensembl chr19:23,975,979...23,977,013 		JBrowse link
STAT family protein binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEBPA CCAAT enhancer binding protein alpha enables ISO (PMID:15664994), (PMID:24429361) ARUK-UCL PMID:15664994 PMID:24429361 NCBI chr 6:28,342,506...28,345,759
Ensembl chr 6:28,343,907...28,344,977 		JBrowse link
G DTX3L deltex E3 ubiquitin ligase 3L enables IEA Ensembl GO_REF:0000107 NCBI chr22:58,287,331...58,298,519
Ensembl chr22:58,290,764...58,298,376 		JBrowse link
G EP300 E1A binding protein p300 enables IEA Ensembl GO_REF:0000107 NCBI chr19:23,634,132...23,726,095
Ensembl chr19:23,634,571...23,724,979 		JBrowse link
G FAM220A family with sequence similarity 220 member A enables IEA TreeGrafter GO_REF:0000118 NCBI chr28:15,538,085...15,560,278
Ensembl chr28:15,539,047...15,539,826 		JBrowse link
G HSF1 heat shock transcription factor 1 ISO RGD PMID:22426029 RGD:10402789 NCBI chr 8:138,503,836...138,529,562
Ensembl chr 8:138,503,831...138,529,165 		JBrowse link
G PARP9 poly(ADP-ribose) polymerase family member 9 enables IEA Ensembl GO_REF:0000107 NCBI chr22:58,297,526...58,336,243
Ensembl chr22:58,298,046...58,337,124 		JBrowse link
G PPARG peroxisome proliferator activated receptor gamma enables ISO (PMID:28467929) ARUK-UCL PMID:28467929 NCBI chr22:48,262,743...48,407,415
Ensembl chr22:48,275,600...48,407,418 		JBrowse link
G PTPN2 protein tyrosine phosphatase non-receptor type 2 enables ISO (PMID:26026268) MGI PMID:26026268 NCBI chr18:71,302,082...71,400,201
Ensembl chr18:71,310,577...71,345,960 		JBrowse link
G PTPRT protein tyrosine phosphatase receptor type T enables ISO (PMID:17360477) ARUK-UCL PMID:17360477 NCBI chr 2:20,613,352...21,720,417 JBrowse link
G PTPRT protein tyrosine phosphatase receptor type T enables IEA Ensembl GO_REF:0000107 Ensembl chr 2:21,327,612...21,719,718 JBrowse link
G SPI1 Spi-1 proto-oncogene enables IEA Ensembl GO_REF:0000107 NCBI chr 1:17,935,037...17,961,638
Ensembl chr 1:17,935,922...17,961,717 		JBrowse link
Tat protein binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTB actin beta enables ISO (PMID:16687403) BHF-UCL PMID:16687403 NCBI chr28:16,195,676...16,197,161
Ensembl chr12:52,426,752...52,427,879 		JBrowse link
G CTDP1 CTD phosphatase subunit 1 enables IEA Ensembl GO_REF:0000107 NCBI chr18:479,476...549,546
Ensembl chr18:478,543...544,258 		JBrowse link
G DLL1 delta like canonical Notch ligand 1 enables ISO (PMID:15509766) UniProt PMID:15509766 NCBI chr13:97,928,480...97,936,594
Ensembl chr13:97,928,634...97,936,589 		JBrowse link
G DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 enables ISO (PMID:14752510) ParkinsonsUK-UCL PMID:14752510 NCBI chr12:47,220,976...47,235,684 JBrowse link
G DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 enables IEA Ensembl GO_REF:0000107 Ensembl chr12:47,224,138...47,235,167 JBrowse link
G GABARAPL1 GABA type A receptor associated protein like 1 enables ISO (PMID:22354992) UniProt PMID:22354992 NCBI chr11:10,087,582...10,099,125
Ensembl chr11:10,087,604...10,096,612 		JBrowse link
G MDFIC MyoD family inhibitor domain containing enables IEA Ensembl GO_REF:0000107 NCBI chr21:83,624,021...83,721,584
Ensembl chr21:83,625,299...83,718,507 		JBrowse link
G NPM1 nucleophosmin 1 enables IEA Ensembl GO_REF:0000107 NCBI chr23:73,555,020...73,575,910
Ensembl chr23:73,555,260...73,575,925 		JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 enables ISO (PMID:16687403) BHF-UCL PMID:16687403 NCBI chr 6:9,943,162...10,044,476 JBrowse link
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 enables ISO (PMID:16687403) BHF-UCL PMID:16687403 NCBI chr19:6,902,985...6,945,111
Ensembl chr19:6,902,951...6,944,784 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 18050
    binding 16493
      protein binding 14613
        transcription factor binding 666
          DNA-binding transcription factor binding 540
            RNA polymerase II-specific DNA-binding transcription factor binding 386
              NF-kappaB binding 36
              NFAT protein binding 6
              STAT family protein binding 11
              Tat protein binding 10
              aryl hydrocarbon receptor binding 9
              nuclear receptor binding + 157
paths to the root