TFDP3 (transcription factor Dp family member 3) - Rat Genome Database

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Gene: TFDP3 (transcription factor Dp family member 3) Chlorocebus sabaeus
Analyze
Symbol: TFDP3
Name: transcription factor Dp family member 3
RGD ID: 18641802
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor binding (inferred); RNA polymerase II transcription regulatory region sequence-specific DNA binding (inferred); INVOLVED IN DNA damage response (inferred); negative regulation of G1/S transition of mitotic cell cycle (inferred); regulation of cell cycle (inferred); ASSOCIATED WITH autistic disorder (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred); transcription regulator complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Bonobo
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X108,356,281 - 108,358,019 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX108,356,662 - 108,357,879 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606545,884,503 - 45,886,183 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TFDP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X108,356,281 - 108,358,019 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX108,356,662 - 108,357,879 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606545,884,503 - 45,886,183 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TFDP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X133,216,662 - 133,218,354 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX133,216,662 - 133,218,354 (-)EnsemblGRCh38hg38GRCh38
GRCh37X132,350,690 - 132,352,382 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X132,178,363 - 132,180,042 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X132,076,216 - 132,077,896NCBI
CeleraX132,737,132 - 132,738,811 (-)NCBICelera
Cytogenetic MapXq26.2NCBI
HuRefX121,754,908 - 121,756,587 (-)NCBIHuRef
CHM1_1X132,262,216 - 132,263,895 (-)NCBICHM1_1
T2T-CHM13v2.0X131,541,394 - 131,543,086 (-)NCBIT2T-CHM13v2.0
TFDP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X132,640,792 - 132,643,811 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X132,644,397 - 132,647,406 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X122,356,501 - 122,358,710 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X132,663,038 - 132,664,716 (-)NCBIpanpan1.1PanPan1.1panPan2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

hemolymphoid system nervous system
High
Medium
Low 10
Below cutoff 7 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007992734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000018236   ⟹   ENSCSAP00000017698
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 EnsemblX108,356,662 - 108,357,879 (-)Ensembl
RefSeq Acc Id: XM_007992734   ⟹   XP_007990925
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X108,356,281 - 108,358,019 (-)NCBI
Vero_WHO_p1.0NW_02366606545,884,503 - 45,886,183 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007990925 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017698.1
Reference Protein Sequences
RefSeq Acc Id: XP_007990925   ⟸   XM_007992734
- UniProtKB: A0A0D9SA09 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000017698   ⟸   ENSCSAT00000018236


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000299 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018236.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  1.20.140.80 UniProtKB/TrEMBL
InterPro E2F-DP_heterodim UniProtKB/TrEMBL
  E2F_WHTH_DNA-bd_dom UniProtKB/TrEMBL
  TF_DP_C_sf UniProtKB/TrEMBL
  Transc_factor_DP_C UniProtKB/TrEMBL
  Transcrpt_fac_DP UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report csab:103232581 UniProtKB/TrEMBL
NCBI Gene TFDP3 ENTREZGENE
PANTHER PTHR12548 UniProtKB/TrEMBL
  PTHR12548:SF13 UniProtKB/TrEMBL
Pfam E2F_TDP UniProtKB/TrEMBL
  PF08781 UniProtKB/TrEMBL
PIRSF Transcription_factor_DP UniProtKB/TrEMBL
SMART E2F_TDP UniProtKB/TrEMBL
  SM01138 UniProtKB/TrEMBL
Superfamily-SCOP SSF144074 UniProtKB/TrEMBL
  SSF46785 UniProtKB/TrEMBL
UniProt A0A0D9SA09 ENTREZGENE, UniProtKB/TrEMBL