Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:proteasomal protein catabolic process
go back to main search page
Accession:GO:0010498 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
Synonyms:exact_synonym: proteasome-mediated protein catabolic process;   proteasome-mediated protein catabolism

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATE1 arginyltransferase 1 acts_upstream_of_or_within ISO (PMID:25970626) MGI PMID:25970626 NCBI chr 9:114,499,173...114,680,324 JBrowse link
G ATE1 arginyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 9:114,595,545...114,679,258 JBrowse link
G BAG6 BAG cochaperone 6 involved_in ISO (PMID:26565908) UniProt PMID:26565908
G BRINP1 BMP/retinoic acid inducible neural specific 1 acts_upstream_of_or_within ISO (PMID:25732823) MGI PMID:25732823 NCBI chr12:20,189,270...20,387,494
Ensembl chr12:20,189,295...20,388,089 		JBrowse link
G CUL4B cullin 4B acts_upstream_of_or_within ISO (PMID:25970626) MGI PMID:25970626
G DDB1 damage specific DNA binding protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25970626) MGI
Ensembl		 PMID:25970626 GO_REF:0000107 NCBI chr 1:12,508,712...12,543,127
Ensembl chr 1:12,508,443...12,544,913 		JBrowse link
G DDI1 DNA damage inducible 1 homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:95,423,135...95,425,366
Ensembl chr 1:95,423,431...95,424,621 		JBrowse link
G DDI2 DNA damage inducible 1 homolog 2 involved_in ISO (PMID:29290612) UniProt PMID:29290612 NCBI chr20:116,640,166...116,680,403 JBrowse link
G DERL1 derlin 1 involved_in IEA UniProt GO_REF:0000117 NCBI chr 8:117,587,373...117,617,233
Ensembl chr 8:117,586,496...117,617,194 		JBrowse link
G DERL2 derlin 2 involved_in IEA UniProt GO_REF:0000117 NCBI chr16:4,882,296...4,897,799
Ensembl chr16:4,881,876...4,898,078 		JBrowse link
G DERL3 derlin 3 involved_in IEA UniProt GO_REF:0000117 NCBI chr19:6,944,291...6,949,948
Ensembl chr19:6,947,403...6,949,845 		JBrowse link
G DTX4 deltex E3 ubiquitin ligase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:14,354,752...14,390,630
Ensembl chr 1:14,358,001...14,390,239 		JBrowse link
G FBXO44 F-box protein 44 acts_upstream_of_or_within ISO (PMID:25970626) MGI PMID:25970626 NCBI chr20:120,128,422...120,137,081
Ensembl chr20:120,127,750...120,136,395 		JBrowse link
G IFT80 intraflagellar transport 80 acts_upstream_of_or_within ISO (PMID:35733270) MGI PMID:35733270 NCBI chr15:30,441,724...30,577,437
Ensembl chr15:30,461,526...30,577,484 		JBrowse link
G MARCHF6 membrane associated ring-CH-type finger 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:9,891,847...9,970,617
Ensembl chr 4:9,891,580...9,970,300 		JBrowse link
G NR1D1 nuclear receptor subfamily 1 group D member 1 involved_in ISO (MGI:3785131|PMID:18227153), (MGI:5303043|PMID:21874017) UniProt PMID:18227153 PMID:21874017 MGI:3785131 MGI:5303043 NCBI chr16:66,078,990...66,086,927
Ensembl chr16:66,079,089...66,090,685 		JBrowse link
G NUB1 negative regulator of ubiquitin like proteins 1 acts_upstream_of_or_within ISO (PMID:26797281) MGI PMID:26797281 NCBI chr21:119,525,757...119,559,412
Ensembl chr21:119,525,932...119,560,886 		JBrowse link
G PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:19,861,182...19,865,628
Ensembl chr18:19,862,743...19,865,250 		JBrowse link
G PMP22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (PMID:14627652) MGI PMID:14627652 NCBI chr16:14,527,892...14,563,223
Ensembl chr16:14,527,672...14,563,171 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:19725078) BHF-UCL PMID:19725078 NCBI chr13:88,856,056...90,329,379 JBrowse link
G PRPF19 pre-mRNA processing factor 19 involved_in ISO (MGI:5586800|PMID:17349974)
(PMID:17349974)		 UniProt PMID:17349974 MGI:5586800 NCBI chr 1:12,942,238...12,958,853
Ensembl chr 1:12,942,213...12,959,947 		JBrowse link
G PSMA2 proteasome 20S subunit alpha 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:15,672,115...15,686,492
Ensembl chr21:15,672,106...15,687,177 		JBrowse link
G PSMA3 proteasome 20S subunit alpha 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:35,438,084...35,465,320
Ensembl chr24:35,437,308...35,465,203 		JBrowse link
G PSMA4 proteasome 20S subunit alpha 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:4,793,046...4,802,098
Ensembl chr26:4,793,307...4,801,886 		JBrowse link
G PSMA5 proteasome 20S subunit alpha 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:24,120,613...24,146,369
Ensembl chr20:24,120,562...24,148,736 		JBrowse link
G PSMA6 proteasome 20S subunit alpha 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:12,099,804...12,127,477
Ensembl chr24:12,099,937...12,127,309 		JBrowse link
G PSMA7 proteasome 20S subunit alpha 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:2,094,331...2,101,069
Ensembl chr 2:2,094,455...2,100,936 		JBrowse link
G PSMA8 proteasome 20S subunit alpha 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr18:54,384,955...54,441,692
Ensembl chr18:54,385,855...54,440,912 		JBrowse link
G PSMB2 proteasome 20S subunit beta 2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr20:97,232,632...97,270,608
Ensembl chr20:97,232,632...97,270,973 		JBrowse link
G RNF41 ring finger protein 41 involved_in ISO (PMID:18541373) ParkinsonsUK-UCL PMID:18541373 NCBI chr11:52,151,968...52,175,760
Ensembl chr11:52,141,715...52,175,728 		JBrowse link
G SCO1 SCO1, cytochrome c oxidase assembly protein acts_upstream_of ISO (PMID:25683716) MGI PMID:25683716 NCBI chr16:10,021,480...10,036,920 JBrowse link
G SOCS6 suppressor of cytokine signaling 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20007709) MGI
Ensembl		 PMID:20007709 GO_REF:0000107 NCBI chr18:9,445,820...9,488,125
Ensembl chr18:9,449,740...9,451,347 		JBrowse link
G TRIM21 tripartite motif containing 21 involved_in ISO (PMID:36359729) UniProt PMID:36359729 NCBI chr 1:62,451,808...62,460,658
Ensembl chr 1:62,451,830...62,460,659 		JBrowse link
G VCP valosin containing protein involved_in ISO (PMID:26565908) UniProt PMID:26565908 NCBI chr12:45,545,139...45,560,702
Ensembl chr12:45,545,507...45,563,380 		JBrowse link
G VHL von Hippel-Lindau tumor suppressor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17981124) Ensembl
MGI		 PMID:17981124 GO_REF:0000107 NCBI chr22:46,184,621...46,203,065
Ensembl chr22:46,184,756...46,204,428 		JBrowse link
anaphase-promoting complex-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANAPC1 anaphase promoting complex subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:14,841,351...14,958,734
Ensembl chr14:14,841,197...14,958,743 		JBrowse link
G ANAPC10 anaphase promoting complex subunit 10 involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:91,557,905...91,673,235
Ensembl chr 7:91,554,951...91,673,266 		JBrowse link
G ANAPC11 anaphase promoting complex subunit 11 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:73,765,660...73,773,687
Ensembl chr16:73,765,674...73,773,620 		JBrowse link
G ANAPC13 anaphase promoting complex subunit 13 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr15:55,892,385...55,901,168
Ensembl chr15:55,895,970...55,900,256 		JBrowse link
G ANAPC15 anaphase promoting complex subunit 15 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr 1:63,313,971...63,317,170
Ensembl chr 1:63,314,274...63,315,664 		JBrowse link
G ANAPC16 anaphase promoting complex subunit 16 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr 9:59,076,800...59,096,000
Ensembl chr 9:59,074,739...59,096,432 		JBrowse link
G ANAPC2 anaphase promoting complex subunit 2 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr12:1,000,885...1,014,710
Ensembl chr12:1,000,952...1,016,261 		JBrowse link
G ANAPC4 anaphase promoting complex subunit 4 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr27:24,947,516...24,989,331
Ensembl chr27:24,946,681...24,989,208 		JBrowse link
G ANAPC5 anaphase promoting complex subunit 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:116,680,799...116,728,065
Ensembl chr11:116,680,587...116,728,122 		JBrowse link
G ANAPC7 anaphase promoting complex subunit 7 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr11:105,612,881...105,640,147 JBrowse link
G CDC16 cell division cycle 16 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:92,018,619...92,057,232
Ensembl chr 3:92,018,681...92,059,413 		JBrowse link
G CDC20 cell division cycle 20 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:89,449,008...89,453,263
Ensembl chr20:89,444,165...89,453,044 		JBrowse link
G CDC20B cell division cycle 20B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:51,349,486...51,408,437
Ensembl chr 4:51,351,574...51,406,488 		JBrowse link
G CDC23 cell division cycle 23 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:40,858,185...40,892,409
Ensembl chr23:40,855,362...40,892,385 		JBrowse link
G CDC26 cell division cycle 26 involved_in IEA InterPro GO_REF:0000002 NCBI chr12:26,296,836...26,305,094
Ensembl chr12:26,296,838...26,304,862 		JBrowse link
G CDC27 cell division cycle 27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:59,497,731...59,564,298
Ensembl chr16:59,497,713...59,564,480 		JBrowse link
G CUL3 cullin 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10500095) MGI
Ensembl		 PMID:10500095 GO_REF:0000107 NCBI chr10:110,425,895...110,541,431
Ensembl chr10:110,425,076...110,541,538 		JBrowse link
G ECRG4 ECRG4 augurin precursor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20404145) Ensembl
MGI
TreeGrafter		 PMID:20404145 GO_REF:0000107 GO_REF:0000118 NCBI chr14:9,686,930...9,698,708
Ensembl chr14:9,687,043...9,699,049 		JBrowse link
G FBXO31 F-box protein 31 involved_in ISO (PMID:19412162) UniProt PMID:19412162 NCBI chr 5:72,696,868...72,752,480
Ensembl chr 5:72,701,136...72,752,989 		JBrowse link
G FZR1 fizzy and cell division cycle 20 related 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:3,272,247...3,300,370
Ensembl chr 6:3,288,407...3,298,464 		JBrowse link
G UBE2C ubiquitin conjugating enzyme E2 C involved_in ISO (PMID:19822757), (PMID:9122200) UniProt PMID:9122200 PMID:19822757 NCBI chr 2:18,069,525...18,073,597 JBrowse link
G UBE2S ubiquitin conjugating enzyme E2 S involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:48,000,792...48,007,704
Ensembl chr 6:48,000,656...48,007,767 		JBrowse link
CAT tailing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NEMF nuclear export mediator factor involved_in ISO (PMID:33406423), (PMID:33909987)
(MGI:6718911|PMID:33909987)		 UniProt PMID:33406423 PMID:33909987 MGI:6718911 NCBI chr24:26,834,457...26,906,668
Ensembl chr24:26,835,305...26,906,564 		JBrowse link
cytoplasm protein quality control by the ubiquitin-proteasome system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RNF126 ring finger protein 126 involved_in ISO (PMID:24981174) UniProt PMID:24981174 NCBI chr 6:392,717...409,139 JBrowse link
G UBR4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr20:113,354,561...113,493,936
Ensembl chr20:113,355,676...113,494,386 		JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:29033132) UniProt PMID:29033132 NCBI chr 8:97,104,325...97,257,317
Ensembl chr 8:97,103,220...97,257,440 		JBrowse link
ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMFR autocrine motility factor receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:42,276,672...42,334,508
Ensembl chr 5:42,275,584...42,334,207 		JBrowse link
G AUP1 AUP1 lipid droplet regulating VLDL assembly factor involved_in IEA InterPro GO_REF:0000002 NCBI chr14:32,748,737...32,751,924
Ensembl chr14:32,748,909...32,751,776 		JBrowse link
G BAG6 BAG cochaperone 6 involved_in ISO (PMID:23129660), (PMID:24981174)
(PMID:26565908)		 UniProt PMID:23129660 PMID:24981174 PMID:26565908
G BRSK2 BR serine/threonine kinase 2 involved_in ISO (PMID:23907667) ParkinsonsUK-UCL PMID:23907667
G CCDC47 coiled-coil domain containing 47 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25009997) Ensembl
MGI		 PMID:25009997 GO_REF:0000107 NCBI chr16:57,517,759...57,545,495
Ensembl chr16:57,525,512...57,547,798 		JBrowse link
G DERL1 derlin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:117,587,373...117,617,233
Ensembl chr 8:117,586,496...117,617,194 		JBrowse link
G DERL2 derlin 2 involved_in ISO (PMID:16449189) UniProt PMID:16449189 NCBI chr16:4,882,296...4,897,799
Ensembl chr16:4,881,876...4,898,078 		JBrowse link
G DERL3 derlin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:6,944,291...6,949,948
Ensembl chr19:6,947,403...6,949,845 		JBrowse link
G DNAJB12 DnaJ heat shock protein family (Hsp40) member B12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:58,954,908...58,976,453
Ensembl chr 9:58,955,201...58,976,943 		JBrowse link
G DNAJB2 DnaJ heat shock protein family (Hsp40) member B2 involved_in ISO (PMID:15936278) BHF-UCL PMID:15936278 NCBI chr10:105,185,987...105,193,749
Ensembl chr10:105,186,608...105,194,574 		JBrowse link
G DNAJB9 DnaJ heat shock protein family (Hsp40) member B9 involved_in ISO (PMID:18400946)
(MGI:5499714|PMID:22267725)		 UniProt PMID:18400946 PMID:22267725 MGI:5499714 NCBI chr21:77,477,177...77,482,190
Ensembl chr21:77,479,112...77,482,571 		JBrowse link
G DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 involved_in ISO (PMID:18400946)
(MGI:4943381|PMID:18653895), (MGI:4947480|PMID:21329881)		 UniProt PMID:18400946 PMID:18653895 PMID:21329881 MGI:4943381 MGI:4947480 NCBI chr10:68,243,867...68,296,818
Ensembl chr10:68,244,091...68,295,301 		JBrowse link
G ECPAS Ecm29 proteasome adaptor and scaffold involved_in ISO (PMID:15496406) UniProt PMID:15496406 NCBI chr12:28,076,607...28,201,556
Ensembl chr12:28,087,447...28,203,848 		JBrowse link
G EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11375934) Ensembl
MGI		 PMID:11375934 GO_REF:0000107 NCBI chr22:41,253,861...41,286,185
Ensembl chr22:41,253,989...41,282,140 		JBrowse link
G EDEM2 ER degradation enhancing alpha-mannosidase like protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:39,417,994...39,452,398
Ensembl chr 2:39,417,590...39,452,497 		JBrowse link
G EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 involved_in ISO (MGI:3654428|PMID:16431915)
(PMID:25092655)		 ParkinsonsUK-UCL
ARUK-UCL		 PMID:16431915 PMID:25092655 MGI:3654428 NCBI chr25:44,619,717...44,688,794
Ensembl chr25:44,619,861...44,685,227 		JBrowse link
G EIF2AK3 eukaryotic translation initiation factor 2 alpha kinase 3 involved_in ISO (MGI:6467680|PMID:17707796) UniProt PMID:17707796 MGI:6467680 NCBI chr14:18,135,973...18,209,471
Ensembl chr14:18,136,291...18,209,457 		JBrowse link
G ERLEC1 endoplasmic reticulum lectin 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr14:53,150,627...53,188,821
Ensembl chr14:53,154,556...53,188,538 		JBrowse link
G ERLIN1 ER lipid raft associated 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:93,181,320...93,217,967
Ensembl chr 9:93,181,319...93,217,034 		JBrowse link
G ERLIN2 ER lipid raft associated 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:35,771,541...35,789,848
Ensembl chr 8:35,771,580...35,789,345 		JBrowse link
G FAF2 Fas associated factor family member 2 involved_in ISO (PMID:24215460) UniProt PMID:24215460 NCBI chr23:78,421,558...78,515,671
Ensembl chr23:78,456,545...78,516,245 		JBrowse link
G FBXO2 F-box protein 2 acts_upstream_of_or_within ISO (PMID:15723043) MGI PMID:15723043 NCBI chr20:120,136,630...120,144,119
Ensembl chr20:120,136,702...120,144,258 		JBrowse link
G FBXO6 F-box protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:120,116,125...120,127,025
Ensembl chr20:120,116,169...120,126,920 		JBrowse link
G FOXRED2 FAD dependent oxidoreductase domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:19,198,526...19,219,402
Ensembl chr19:19,199,499...19,218,641 		JBrowse link
G GET4 guided entry of tail-anchored proteins factor 4 involved_in ISO (PMID:21636303) ParkinsonsUK-UCL PMID:21636303 NCBI chr28:20,678,584...20,699,957
Ensembl chr28:20,680,293...20,699,927 		JBrowse link
G HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in ISO (PMID:28827405) UniProt PMID:28827405 NCBI chr 5:42,877,812...42,889,576
Ensembl chr 5:42,877,781...42,890,298 		JBrowse link
G HSP90B1 heat shock protein 90 beta family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:99,119,268...99,139,988
Ensembl chr11:99,119,224...99,139,722 		JBrowse link
G JKAMP JNK1/MAPK8 associated membrane protein involved_in ISO (PMID:19269966) UniProt PMID:19269966 NCBI chr24:36,714,768...36,737,601
Ensembl chr24:36,714,915...36,737,799 		JBrowse link
G LOC103235043 reticulocalbin-3 involved_in ISO (MGI:6201885|PMID:26252542) UniProt PMID:26252542 MGI:6201885 NCBI chr 6:42,706,120...42,718,677
Ensembl chr 6:42,705,585...42,718,594 		JBrowse link
G LOC103235498 serine/threonine-protein kinase BRSK2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:1,193,740...1,258,829
Ensembl chr 1:1,193,808...1,258,433 		JBrowse link
G MAN1A1 mannosidase alpha class 1A member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:54,494,856...54,668,888
Ensembl chr13:54,496,370...54,671,539 		JBrowse link
G MAN1B1 mannosidase alpha class 1B member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15294975) Ensembl
MGI		 PMID:15294975 GO_REF:0000107 NCBI chr12:1,080,492...1,104,981
Ensembl chr12:1,080,305...1,105,027 		JBrowse link
G NPLOC4 NPL4 homolog, ubiquitin recognition factor involved_in ISO PMID:12847084 ComplexPortal PMID:12847084 RGD:10047330 NCBI chr16:73,499,737...73,570,753
Ensembl chr16:73,502,123...73,570,710 		JBrowse link
G OS9 OS9 endoplasmic reticulum lectin involved_in IEA InterPro GO_REF:0000002 NCBI chr11:53,606,916...53,635,152
Ensembl chr11:53,607,008...53,635,793 		JBrowse link
G RHBDD1 rhomboid domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:112,882,789...113,018,889
Ensembl chr10:112,882,789...113,020,732 		JBrowse link
G RNF103 ring finger protein 103 involved_in ISO (PMID:18675248) UniProt PMID:18675248
G RNF139 ring finger protein 139 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:119,041,885...119,055,119
Ensembl chr 8:119,042,223...119,054,486 		JBrowse link
G RNF185 ring finger protein 185 involved_in ISO (PMID:24019521) ParkinsonsUK-UCL PMID:24019521 NCBI chr19:14,050,271...14,095,819
Ensembl chr19:14,076,113...14,093,410 		JBrowse link
G RNF5 ring finger protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:39,851,491...39,853,912
Ensembl chr17:39,851,874...39,853,819 		JBrowse link
G SDF2L1 stromal cell derived factor 2 like 1 acts_upstream_of_or_within ISO PMID:23444373 MGI PMID:23444373 RGD:8554667 NCBI chr19:4,465,795...4,467,882
Ensembl chr19:4,465,797...4,467,761 		JBrowse link
G SEC61B SEC61 translocon subunit beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:40,194,243...40,202,474
Ensembl chr12:40,194,301...40,202,441 		JBrowse link
G SEL1L SEL1L adaptor subunit of SYVN1 ubiquitin ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr24:58,812,553...58,877,173
Ensembl chr24:58,809,650...58,877,054 		JBrowse link
G SEL1L2 SEL1L2 adaptor subunit of SYVN1 ubiquitin ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:42,731,035...42,887,581
Ensembl chr 2:42,738,577...42,825,557 		JBrowse link
G SELENOS selenoprotein S involved_in ISO (PMID:15215856) UniProt PMID:15215856 NCBI chr29:19,727,073...19,732,384
Ensembl chr29:19,726,451...19,732,375 		JBrowse link
G SGTA small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23129660) UniProt PMID:23129660 NCBI chr 6:2,534,398...2,562,306
Ensembl chr 6:2,534,376...2,548,604 		JBrowse link
G STT3B STT3 oligosaccharyltransferase complex catalytic subunit B involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:76,060,670...76,165,415
Ensembl chr15:76,060,406...76,165,468 		JBrowse link
G STUB1 STIP1 homology and U-box containing protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:599,907...602,549
Ensembl chr 5:599,819...605,567 		JBrowse link
G SYVN1 synoviolin 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:22607976), (PMID:26471130), (PMID:28827405)
(MGI:5645202|PMID:21454652)
(PMID:21245296)
(PMID:12459480), (PMID:14593114), (PMID:17059562), (PMID:22590560)		 UniProt
ParkinsonsUK-UCL
MGI		 PMID:12459480 PMID:14593114 PMID:17059562 PMID:21245296 PMID:21454652 More... MGI:5645202 NCBI chr 1:9,093,657...9,101,245
Ensembl chr 1:9,094,592...9,100,213 		JBrowse link
G TMEM129 transmembrane protein 129, E3 ubiquitin ligase involved_in ISO (PMID:24807418) ParkinsonsUK-UCL PMID:24807418 NCBI chr27:47,045,579...47,050,641
Ensembl chr27:47,045,427...47,051,327 		JBrowse link
G TMEM67 transmembrane protein 67 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:88,726,783...88,818,111
Ensembl chr 8:88,726,837...88,792,049 		JBrowse link
G TMUB1 transmembrane and ubiquitin like domain containing 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr21:119,263,465...119,266,067
Ensembl chr21:119,263,447...119,265,696 		JBrowse link
G TMUB2 transmembrane and ubiquitin like domain containing 2 involved_in IEA InterPro GO_REF:0000002
G TOR1A torsin family 1 member A involved_in ISO (MGI:3712415|PMID:17200151) UniProt PMID:17200151 MGI:3712415 NCBI chr12:8,312,652...8,323,932
Ensembl chr12:8,312,650...8,322,907 		JBrowse link
G TRIM13 tripartite motif containing 13 involved_in ISO (PMID:17314412) UniProt PMID:17314412 NCBI chr 3:27,851,552...27,925,379
Ensembl chr 3:27,924,150...27,925,373 		JBrowse link
G TRIM25 tripartite motif containing 25 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:36,496,829...36,522,427
Ensembl chr16:36,496,772...36,524,148 		JBrowse link
G UBE2G2 ubiquitin conjugating enzyme E2 G2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11278356) Ensembl
MGI		 PMID:11278356 GO_REF:0000107 NCBI chr 2:88,481,221...88,512,998
Ensembl chr 2:88,483,204...88,498,067 		JBrowse link
G UBE2J1 ubiquitin conjugating enzyme E2 J1 acts_upstream_of_or_within
involved_in		 ISO (PMID:21245296)
(PMID:24020373)
(PMID:22607976)		 MGI
UniProt		 PMID:21245296 PMID:22607976 PMID:24020373 NCBI chr13:14,092,318...14,117,187
Ensembl chr13:14,090,789...14,116,887 		JBrowse link
G UBE2J2 ubiquitin conjugating enzyme E2 J2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:130,174,207...130,192,723
Ensembl chr20:130,174,223...130,195,150 		JBrowse link
G UBE4A ubiquitination factor E4A involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:109,735,778...109,776,629
Ensembl chr 1:109,735,752...109,776,661 		JBrowse link
G UBE4B ubiquitination factor E4B involved_in IEA InterPro GO_REF:0000002 Ensembl chr20:121,610,621...121,744,999 JBrowse link
G UBQLN1 ubiquilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:94,462,867...94,512,313
Ensembl chr12:94,461,972...94,511,747 		JBrowse link
G UBQLN2 ubiquilin 2 involved_in ISO (PMID:24215460) UniProt PMID:24215460 NCBI chr  X:52,486,154...52,489,531
Ensembl chr  X:52,486,454...52,488,328 		JBrowse link
G UBXN4 UBX domain protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:19,949,704...19,990,913
Ensembl chr10:19,949,788...19,990,383 		JBrowse link
G UBXN6 UBX domain protein 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:4,175,858...4,188,687
Ensembl chr 6:4,175,108...4,188,649 		JBrowse link
G UBXN8 UBX domain protein 8 involved_in IEA InterPro GO_REF:0000002 NCBI chr 8:28,862,081...28,884,985
Ensembl chr 8:28,862,069...28,885,415 		JBrowse link
G UFD1 ubiquitin recognition factor in ER associated degradation 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:6,275,834...6,305,940
Ensembl chr19:6,275,844...6,308,035 		JBrowse link
G UMOD uromodulin acts_upstream_of_or_within ISO (PMID:28437467) MGI PMID:28437467 NCBI chr 5:18,620,927...18,641,312
Ensembl chr 5:18,619,895...18,638,719 		JBrowse link
G USP19 ubiquitin specific peptidase 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:10,510,554...10,523,576
Ensembl chr22:10,510,423...10,523,487 		JBrowse link
G VCP valosin containing protein involved_in ISO (PMID:20104022), (PMID:22607976), (PMID:24089527), (PMID:26265139)
PMID:12847084
(PMID:17872946), (PMID:24129571), (PMID:25088257)		 UniProt
ComplexPortal		 PMID:12847084 PMID:17872946 PMID:20104022 PMID:22607976 PMID:24089527 More... RGD:10047330 NCBI chr12:45,545,139...45,560,702
Ensembl chr12:45,545,507...45,563,380 		JBrowse link
G WFS1 wolframin ER transmembrane glycoprotein involved_in ISO (MGI:5009360|PMID:20160352)
(PMID:20160352)		 ParkinsonsUK-UCL PMID:20160352 MGI:5009360 NCBI chr27:42,404,028...42,437,988
Ensembl chr27:42,404,084...42,438,005 		JBrowse link
G YOD1 YOD1 deubiquitinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:22,307,703...22,311,919
Ensembl chr25:22,307,778...22,309,716 		JBrowse link
membrane protein proteolysis involved in retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HM13 histocompatibility minor 13 involved_in ISO (PMID:25239945) ParkinsonsUK-UCL PMID:25239945 NCBI chr 2:35,925,316...35,975,209
Ensembl chr 2:35,925,290...35,977,982 		JBrowse link
G RHBDD1 rhomboid domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:112,882,789...113,018,889
Ensembl chr10:112,882,789...113,020,732 		JBrowse link
negative regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AQP11 aquaporin 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:68,805,354...68,824,017
Ensembl chr 1:68,807,025...68,824,792 		JBrowse link
G SGTA small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23129660) UniProt PMID:23129660 NCBI chr 6:2,534,398...2,562,306
Ensembl chr 6:2,534,376...2,548,604 		JBrowse link
G SVIP small VCP interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:42,185,115...42,193,121
Ensembl chr 1:42,185,121...42,195,006 		JBrowse link
G UBXN1 UBX domain protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:11,228,944...11,231,549
Ensembl chr 1:11,228,135...11,231,459 		JBrowse link
G UBXN2A UBX domain protein 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:83,672,327...83,722,961
Ensembl chr14:83,673,282...83,703,633 		JBrowse link
G USP14 ubiquitin specific peptidase 14 involved_in ISO (PMID:19135427) ParkinsonsUK-UCL PMID:19135427 NCBI chr18:59,568,934...59,622,467
Ensembl chr18:59,568,844...59,621,476 		JBrowse link
G USP25 ubiquitin specific peptidase 25 involved_in ISO (PMID:22590560) ParkinsonsUK-UCL PMID:22590560 NCBI chr 2:76,660,926...76,805,153
Ensembl chr 2:76,662,159...76,791,688 		JBrowse link
negative regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALAD aminolevulinate dehydratase involved_in ISO (PMID:8175643) CAFA PMID:8175643 NCBI chr12:26,173,063...26,185,456
Ensembl chr12:26,173,096...26,189,845 		JBrowse link
G F8A1 coagulation factor VIII associated 1 involved_in ISO (PMID:27815841) UniProt PMID:27815841 NCBI chr  X:129,131,267...129,133,575 JBrowse link
G GABARAPL2 GABA type A receptor associated protein like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:61,053,283...61,078,675
Ensembl chr 5:61,053,262...61,066,083 		JBrowse link
G HSP90AB1 heat shock protein 90 alpha family class B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:27,914,261...27,921,666
Ensembl chr17:27,911,013...27,921,251 		JBrowse link
G LAMP3 lysosomal associated membrane protein 3 involved_in ISO (PMID:25681212) ParkinsonsUK-UCL PMID:25681212 NCBI chr15:6,245,146...6,285,481 JBrowse link
G MARCHF7 membrane associated ring-CH-type finger 7 involved_in ISO (PMID:29295817) UniProt PMID:29295817 NCBI chr10:45,121,817...45,178,547
Ensembl chr10:45,121,538...45,177,271 		JBrowse link
G OPHN1 oligophrenin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:57,906,868...58,291,358
Ensembl chr  X:57,911,555...58,290,900 		JBrowse link
G PRKCG protein kinase C gamma involved_in ISO (MGI:5467682|PMID:23185022) UniProt PMID:23185022 MGI:5467682 NCBI chr 6:46,574,560...46,600,329
Ensembl chr 6:46,575,439...46,600,364 		JBrowse link
G PSME3IP1 proteasome activator subunit 3 interacting protein 1 involved_in ISO (PMID:29934401) UniProt PMID:29934401 NCBI chr 5:43,104,475...43,137,745 JBrowse link
G PSMF1 proteasome inhibitor subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:55,373,939...55,415,928
Ensembl chr 2:55,376,171...55,415,893 		JBrowse link
G SCO1 SCO1, cytochrome c oxidase assembly protein acts_upstream_of_or_within ISO (PMID:25683716) MGI PMID:25683716 NCBI chr16:10,021,480...10,036,920 JBrowse link
G USP19 ubiquitin specific peptidase 19 involved_in ISO (MGI:5614537|PMID:25088257) ParkinsonsUK-UCL PMID:25088257 MGI:5614537 NCBI chr22:10,510,554...10,523,576
Ensembl chr22:10,510,423...10,523,487 		JBrowse link
negative regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAG5 BAG cochaperone 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:81,496,664...81,502,969 JBrowse link
G BAG6 BAG cochaperone 6 involved_in ISO (MGI:3808636|PMID:18678708) UniProt PMID:18678708 MGI:3808636
G CAMLG calcium modulating ligand involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:37,527,411...37,540,405
Ensembl chr23:37,527,875...37,541,259 		JBrowse link
G CCAR2 cell cycle and apoptosis regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:20,685,482...20,700,424
Ensembl chr 8:20,686,504...20,699,707 		JBrowse link
G CLEC16A C-type lectin domain containing 16A acts_upstream_of_or_within ISO (PMID:24949970) MGI PMID:24949970 NCBI chr 5:10,420,866...10,658,370
Ensembl chr 5:10,420,931...10,658,507 		JBrowse link
G CSNK2A1 casein kinase 2 alpha 1 involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chr 2:55,982,259...56,047,023 JBrowse link
G CSNK2A2 casein kinase 2 alpha 2 involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chr 5:44,093,320...44,133,352
Ensembl chr 5:44,093,215...44,133,335 		JBrowse link
G CSNK2B casein kinase 2 beta involved_in ISO (PMID:28031292) ARUK-UCL PMID:28031292 NCBI chr17:40,354,520...40,359,136
Ensembl chr17:40,352,367...40,358,401 		JBrowse link
G DDRGK1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:33,846,591...33,879,770
Ensembl chr 2:33,860,439...33,880,101 		JBrowse link
G EIF3H eukaryotic translation initiation factor 3 subunit H involved_in ISO (PMID:32269044) FlyBase PMID:32269044 NCBI chr 8:111,283,184...111,390,835 JBrowse link
G FHIT fragile histidine triad diadenosine triphosphatase involved_in ISO (PMID:15313915) UniProt PMID:15313915 NCBI chr22:21,006,010...22,474,056 JBrowse link
G GIPC1 GIPC PDZ domain containing family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:13,136,647...13,155,259
Ensembl chr 6:13,136,624...13,142,002 		JBrowse link
G HFE homeostatic iron regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:46,159,770...46,168,831
Ensembl chr17:46,156,685...46,164,649 		JBrowse link
G HSP90AB1 heat shock protein 90 alpha family class B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:27,914,261...27,921,666
Ensembl chr17:27,911,013...27,921,251 		JBrowse link
G KLHL40 kelch like family member 40 acts_upstream_of_or_within ISO (PMID:24960163) MGI PMID:24960163 NCBI chr22:4,141,759...4,149,158
Ensembl chr22:4,142,192...4,148,710 		JBrowse link
G LOC103221857 E3 ubiquitin-protein ligase TRIM39 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:42,142,185...42,159,256
Ensembl chr17:42,142,073...42,158,764 		JBrowse link
G MAP1A microtubule associated protein 1A involved_in ISO (MGI:5703671|PMID:26609151) ARUK-UCL PMID:26609151 MGI:5703671 NCBI chr26:39,469,013...39,489,666
Ensembl chr26:39,468,222...39,489,613 		JBrowse link
G MTM1 myotubularin 1 acts_upstream_of_or_within ISO (PMID:23695157) MGI PMID:23695157 NCBI chr  X:125,151,279...125,250,816
Ensembl chr  X:125,174,289...125,249,588 		JBrowse link
G N4BP1 NEDD4 binding protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:34,351,845...34,423,152
Ensembl chr 5:34,347,979...34,422,887 		JBrowse link
G NOP53 NOP53 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:41,058,199...41,070,220
Ensembl chr 6:41,057,906...41,071,202 		JBrowse link
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:61,351,047...61,393,541
Ensembl chr  X:61,351,054...61,394,305 		JBrowse link
G PANO1 proapoptotic nucleolar protein 1 involved_in ISO (PMID:22094112) UniProt PMID:22094112 NCBI chr 1:600,919...602,589 JBrowse link
G PARK7 Parkinsonism associated deglycase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:123,776,084...123,808,031
Ensembl chr20:123,776,297...123,798,434 		JBrowse link
G PBK PDZ binding kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21715333) Ensembl
MGI		 PMID:21715333 GO_REF:0000107 NCBI chr 8:25,921,124...25,943,349
Ensembl chr 8:25,921,133...25,943,062 		JBrowse link
G PHF20L1 PHD finger protein 20 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:127,201,612...127,275,378
Ensembl chr 8:127,201,658...127,272,501 		JBrowse link
G RPL11 ribosomal protein L11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:108,982,781...108,987,667
Ensembl chr20:108,981,723...108,987,734 		JBrowse link
G RYBP RING1 and YY1 binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:33,327,516...33,397,463
Ensembl chr22:33,331,290...33,397,362 		JBrowse link
G SENP1 SUMO specific peptidase 1 acts_upstream_of_or_within ISO (PMID:17981124) MGI PMID:17981124 NCBI chr11:44,272,371...44,334,787 JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16611981) Ensembl
MGI		 PMID:16611981 GO_REF:0000107 NCBI chr21:123,929,937...123,942,451
Ensembl chr21:123,932,900...123,942,395 		JBrowse link
G SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 acts_upstream_of_or_within ISO (PMID:22285184) MGI PMID:22285184 NCBI chr22:8,987,936...9,167,689
Ensembl chr22:8,987,012...9,134,946 		JBrowse link
G TAF9 TATA-box binding protein associated factor 9 involved_in ISO (PMID:11278372) BHF-UCL PMID:11278372 NCBI chr 4:65,451,038...65,455,896 JBrowse link
G TLK2 tousled like kinase 2 involved_in ISO (PMID:20016786) UniProt PMID:20016786 NCBI chr16:58,662,284...58,800,838
Ensembl chr16:58,660,126...58,797,786 		JBrowse link
G TTC36 tetratricopeptide repeat domain 36 acts_upstream_of_or_within ISO (PMID:31537781) MGI PMID:31537781 NCBI chr 1:109,912,976...109,917,097 JBrowse link
G TTC36 tetratricopeptide repeat domain 36 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 1:109,913,430...109,917,024 JBrowse link
G UBXN1 UBX domain protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:11,228,944...11,231,549
Ensembl chr 1:11,228,135...11,231,459 		JBrowse link
G UCHL5 ubiquitin C-terminal hydrolase L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:36,362,340...36,415,550
Ensembl chr25:36,364,027...36,414,762 		JBrowse link
G USP26 ubiquitin specific peptidase 26 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:108,187,526...108,275,829
Ensembl chr  X:108,187,858...108,190,605 		JBrowse link
G USP38 ubiquitin specific peptidase 38 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:90,049,643...90,087,152
Ensembl chr 7:90,049,638...90,089,110 		JBrowse link
G USP7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:8,470,137...8,540,736
Ensembl chr 5:8,469,230...8,540,770 		JBrowse link
G USP9X ubiquitin specific peptidase 9 X-linked involved_in ISO (PMID:33378666) UniProt PMID:33378666 NCBI chr  X:38,255,414...38,402,855
Ensembl chr  X:38,256,008...38,403,323
Ensembl chr  Y:38,256,008...38,403,323 		JBrowse link
G WAC WW domain containing adaptor with coiled-coil involved_in ISO (PMID:22354037) BHF-UCL PMID:22354037 NCBI chr 9:28,131,774...28,222,501
Ensembl chr 9:28,131,769...28,219,134 		JBrowse link
negative regulation of retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DERL2 derlin 2 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chr16:4,882,296...4,897,799
Ensembl chr16:4,881,876...4,898,078 		JBrowse link
G DERL3 derlin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:6,944,291...6,949,948
Ensembl chr19:6,947,403...6,949,845 		JBrowse link
G ERLEC1 endoplasmic reticulum lectin 1 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chr14:53,150,627...53,188,821
Ensembl chr14:53,154,556...53,188,538 		JBrowse link
G OS9 OS9 endoplasmic reticulum lectin involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chr11:53,606,916...53,635,152
Ensembl chr11:53,607,008...53,635,793 		JBrowse link
G SVIP small VCP interacting protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:42,185,115...42,193,121
Ensembl chr 1:42,185,121...42,195,006 		JBrowse link
G UBAC2 UBA domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:77,859,634...78,045,245
Ensembl chr 3:77,860,066...78,045,311 		JBrowse link
G UBE2G2 ubiquitin conjugating enzyme E2 G2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:88,481,221...88,512,998
Ensembl chr 2:88,483,204...88,498,067 		JBrowse link
G UBE2J1 ubiquitin conjugating enzyme E2 J1 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chr13:14,092,318...14,117,187
Ensembl chr13:14,090,789...14,116,887 		JBrowse link
G YOD1 YOD1 deubiquitinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:22,307,703...22,311,919
Ensembl chr25:22,307,778...22,309,716 		JBrowse link
negative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PABPN1L PABPN1 like, cytoplasmic acts_upstream_of_or_within ISO (PMID:32558204) MGI PMID:32558204 NCBI chr 5:74,251,084...74,256,543
Ensembl chr 5:74,252,703...74,255,857 		JBrowse link
G STYX serine/threonine/tyrosine interacting protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr24:29,809,827...29,860,475
Ensembl chr24:29,809,806...29,856,608 		JBrowse link
nuclear protein quality control by the ubiquitin-proteasome system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKIRIN2 akirin 2 acts_upstream_of_positive_effect ISO (PMID:34711951) UniProt PMID:34711951 NCBI chr13:12,146,228...12,175,198 JBrowse link
G CUL3 cullin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:110,425,895...110,541,431
Ensembl chr10:110,425,076...110,541,538 		JBrowse link
G KLHL15 kelch like family member 15 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:22,497,481...22,499,997
Ensembl chr  X:22,460,041...22,497,773
Ensembl chr  X:22,460,041...22,497,773 		JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:37478846), (PMID:37478862) UniProt PMID:37478846 PMID:37478862 NCBI chr 8:97,104,325...97,257,317
Ensembl chr 8:97,103,220...97,257,440 		JBrowse link
positive regulation of anaphase-promoting complex-dependent catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC20 cell division cycle 20 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:89,449,008...89,453,263
Ensembl chr20:89,444,165...89,453,044 		JBrowse link
G CDC20B cell division cycle 20B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:51,349,486...51,408,437
Ensembl chr 4:51,351,574...51,406,488 		JBrowse link
G FZR1 fizzy and cell division cycle 20 related 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:3,272,247...3,300,370
Ensembl chr 6:3,288,407...3,298,464 		JBrowse link
positive regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATXN3 ataxin 3 involved_in ISO (PMID:17000876) ParkinsonsUK-UCL PMID:17000876 NCBI chr24:69,810,433...69,855,308 JBrowse link
G BAG6 BAG cochaperone 6 involved_in ISO (PMID:24424410) ParkinsonsUK-UCL PMID:24424410
G BCAP31 B cell receptor associated protein 31 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:128,128,739...128,152,617
Ensembl chr  X:128,128,271...128,151,823 		JBrowse link
G CAV1 caveolin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:85,222,724...85,258,562
Ensembl chr21:85,222,879...85,258,627 		JBrowse link
G HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in ISO (PMID:18307982)
(PMID:22045699)		 UniProt
ParkinsonsUK-UCL		 PMID:18307982 PMID:22045699 NCBI chr 5:42,877,812...42,889,576
Ensembl chr 5:42,877,781...42,890,298 		JBrowse link
G RNF185 ring finger protein 185 involved_in ISO (PMID:27485036) UniProt PMID:27485036 NCBI chr19:14,050,271...14,095,819
Ensembl chr19:14,076,113...14,093,410 		JBrowse link
G RNFT1 ring finger protein, transmembrane 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr16:33,483,167...33,496,608
Ensembl chr16:33,483,194...33,497,325 		JBrowse link
G RNFT2 ring finger protein, transmembrane 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr11:112,051,969...112,160,948
Ensembl chr11:112,052,097...112,160,793 		JBrowse link
G SGTA small glutamine rich tetratricopeptide repeat co-chaperone alpha involved_in ISO (PMID:23246001) ParkinsonsUK-UCL PMID:23246001 NCBI chr 6:2,534,398...2,562,306
Ensembl chr 6:2,534,376...2,548,604 		JBrowse link
G STUB1 STIP1 homology and U-box containing protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:599,907...602,549
Ensembl chr 5:599,819...605,567 		JBrowse link
G TMEM259 transmembrane protein 259 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:766,097...777,348
Ensembl chr 6:765,587...777,399 		JBrowse link
G TMEM67 transmembrane protein 67 ISO RGD PMID:19815549 RGD:8554391 NCBI chr 8:88,726,783...88,818,111
Ensembl chr 8:88,726,837...88,792,049 		JBrowse link
G TMX1 thioredoxin related transmembrane protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:28,334,017...28,350,571
Ensembl chr24:28,333,357...28,352,457 		JBrowse link
G UBQLN1 ubiquilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:94,462,867...94,512,313
Ensembl chr12:94,461,972...94,511,747 		JBrowse link
G UBQLN2 ubiquilin 2 involved_in ISO (PMID:18307982) UniProt PMID:18307982 NCBI chr  X:52,486,154...52,489,531
Ensembl chr  X:52,486,454...52,488,328 		JBrowse link
G USP13 ubiquitin specific peptidase 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:9,619,065...9,753,490
Ensembl chr15:9,624,300...9,753,466 		JBrowse link
G WFS1 wolframin ER transmembrane glycoprotein involved_in ISO (PMID:19911006) MGI PMID:19911006 NCBI chr27:42,404,028...42,437,988
Ensembl chr27:42,404,084...42,438,005 		JBrowse link
positive regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAG2 BAG cochaperone 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,420,196...14,432,910
Ensembl chr17:14,420,947...14,433,354 		JBrowse link
G DAB2IP DAB2 interacting protein involved_in ISO (PMID:20080667) UniProt PMID:20080667 NCBI chr12:17,802,030...18,017,648
Ensembl chr12:17,801,831...17,830,890 		JBrowse link
G DDRGK1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:33,846,591...33,879,770
Ensembl chr 2:33,860,439...33,880,101 		JBrowse link
G ECSCR endothelial cell surface expressed chemotaxis and apoptosis regulator acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19416853) MGI
TreeGrafter
Ensembl		 PMID:19416853 GO_REF:0000107 GO_REF:0000118 NCBI chr23:42,124,181...42,137,577
Ensembl chr23:42,123,875...42,137,196 		JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:98,894,261...99,105,955
Ensembl chr 7:98,892,504...99,106,084 		JBrowse link
G FMR1 Fragile X messenger ribonucleoprotein 1 involved_in ISO (MGI:5770038|PMID:24709664) UniProt PMID:24709664 MGI:5770038 NCBI chr  X:122,635,383...122,674,298
Ensembl chr  X:122,635,439...122,674,355 		JBrowse link
G KCNE2 potassium voltage-gated channel subfamily E regulatory subunit 2 involved_in ISO (PMID:22180649) BHF-UCL PMID:22180649 NCBI chr 2:57,833,459...57,841,052
Ensembl chr 2:57,833,629...57,834,000 		JBrowse link
G LOC103215169 26S proteasome regulatory subunit 4-like involved_in IEA GOC GO_REF:0000108 NCBI chr 4:39,051,494...39,052,900 JBrowse link
G NUPR1 nuclear protein 1, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:26,382,125...26,385,605
Ensembl chr 5:26,382,132...26,385,348 		JBrowse link
G OAZ1 ornithine decarboxylase antizyme 1 ISO RGD PMID:12359729 RGD:7245486 NCBI chr 6:2,061,774...2,065,595
Ensembl chr 6:2,061,811...2,065,265 		JBrowse link
G OSBPL7 oxysterol binding protein like 7 involved_in ISO (PMID:21669198) BHF-UCL PMID:21669198 NCBI chr16:68,208,121...68,222,684 JBrowse link
G OSBPL7 oxysterol binding protein like 7 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:68,215,177...68,222,651 JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:23858059) ParkinsonsUK-UCL PMID:23858059 NCBI chr13:88,856,056...90,329,379 JBrowse link
G PSMC1 proteasome 26S subunit, ATPase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr24:67,979,449...67,995,103 JBrowse link
G PSMC2 proteasome 26S subunit, ATPase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr21:72,323,691...72,341,647
Ensembl chr21:72,323,803...72,341,488 		JBrowse link
G PSMC3 proteasome 26S subunit, ATPase 3 involved_in IEA GOC GO_REF:0000108 Ensembl chr 1:17,883,824...17,898,451 JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 involved_in IEA GOC GO_REF:0000108 NCBI chr 6:34,486,303...34,495,392
Ensembl chr 6:34,486,338...34,495,251 		JBrowse link
G PSMC5 proteasome 26S subunit, ATPase 5 involved_in IEA GOC GO_REF:0000108 NCBI chr16:57,457,670...57,462,321
Ensembl chr16:57,457,720...57,462,249 		JBrowse link
G PSMC6 proteasome 26S subunit, ATPase 6 involved_in IEA GOC GO_REF:0000108 NCBI chr24:29,784,825...29,807,701
Ensembl chr24:29,784,826...29,807,490 		JBrowse link
G RNF40 ring finger protein 40 ISO RGD PMID:12121982 RGD:633892 NCBI chr 5:27,449,633...27,462,591
Ensembl chr 5:27,449,908...27,463,754 		JBrowse link
G TMTC3 transmembrane O-mannosyltransferase targeting cadherins 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:83,515,494...83,571,644
Ensembl chr11:83,521,169...83,571,695 		JBrowse link
G TREM2 triggering receptor expressed on myeloid cells 2 involved_in ISO (MGI:6150565|PMID:29518356) ARUK-UCL PMID:29518356 MGI:6150565 NCBI chr17:30,965,091...30,999,073
Ensembl chr17:30,994,357...30,999,087 		JBrowse link
positive regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKT1 AKT serine/threonine kinase 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:23512198)
(PMID:15937334)		 UniProt
MGI		 PMID:15937334 PMID:23512198 NCBI chr24:82,704,087...82,730,711
Ensembl chr24:82,704,068...82,727,698 		JBrowse link
G ANKIB1 ankyrin repeat and IBR domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:56,621,669...56,770,553
Ensembl chr21:56,624,114...56,718,920 		JBrowse link
G ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:10,890,440...11,002,812
Ensembl chr26:10,893,735...11,002,159 		JBrowse link
G ATG7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:23152632) MGI PMID:23152632 NCBI chr22:47,187,305...47,571,309
Ensembl chr22:47,325,614...47,571,070 		JBrowse link
G AURKA aurora kinase A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17060449) Ensembl
MGI		 PMID:17060449 GO_REF:0000107 NCBI chr 2:7,730,060...7,753,167
Ensembl chr 2:7,734,128...7,752,395 		JBrowse link
G AXIN1 axin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16601693) TreeGrafter
MGI		 PMID:16601693 GO_REF:0000118 NCBI chr 5:233,520...295,134
Ensembl chr 5:234,060...290,575 		JBrowse link
G AXIN2 axin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:55,874,043...55,906,739
Ensembl chr16:55,874,072...55,907,281 		JBrowse link
G BAG2 BAG cochaperone 2 NOT|involved_in ISO (MGI:6148635|PMID:19228967) ARUK-UCL PMID:19228967 MGI:6148635 NCBI chr17:14,420,196...14,432,910
Ensembl chr17:14,420,947...14,433,354 		JBrowse link
G BBS7 Bardet-Biedl syndrome 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22302990) MGI
Ensembl		 PMID:22302990 GO_REF:0000107 NCBI chr 7:69,100,287...69,153,009
Ensembl chr 7:69,101,662...69,152,768 		JBrowse link
G CBFA2T3 CBFA2/RUNX1 partner transcriptional co-repressor 3 involved_in ISO (PMID:25974097) UniProt PMID:25974097 NCBI chr 5:74,260,516...74,361,268
Ensembl chr 5:74,263,375...74,289,875 		JBrowse link
G CHFR checkpoint with forkhead and ring finger domains acts_upstream_of_or_within ISO (PMID:22285184) MGI PMID:22285184 NCBI chr11:128,175,768...128,207,710
Ensembl chr11:128,175,515...128,207,443 		JBrowse link
G CLU clusterin involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:25,704,441...25,721,789
Ensembl chr 8:25,703,257...25,721,789 		JBrowse link
G COP1 COP1 E3 ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:53,057,479...53,316,662
Ensembl chr25:53,057,784...53,314,398 		JBrowse link
G CSNK1A1 casein kinase 1 alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:52,111,500...52,169,043
Ensembl chr23:52,114,053...52,168,998 		JBrowse link
G CSNK1D casein kinase 1 delta involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:74,157,875...74,192,142
Ensembl chr16:74,160,648...74,192,108 		JBrowse link
G DAB2 DAB adaptor protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:38,171,320...38,224,275
Ensembl chr 4:38,173,026...38,224,231 		JBrowse link
G DDA1 DET1 and DDB1 associated 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:15,815,956...15,826,873
Ensembl chr 6:15,816,030...15,826,232 		JBrowse link
G DDRGK1 DDRGK domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:33,846,591...33,879,770
Ensembl chr 2:33,860,439...33,880,101 		JBrowse link
G DET1 DET1 partner of COP1 E3 ubiquitin ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr29:7,078,777...7,103,174
Ensembl chr29:7,078,578...7,096,486 		JBrowse link
G DNAJB2 DnaJ heat shock protein family (Hsp40) member B2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:105,185,987...105,193,749
Ensembl chr10:105,186,608...105,194,574 		JBrowse link
G DVL1 dishevelled segment polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:130,105,032...130,118,978
Ensembl chr20:130,104,639...130,117,139 		JBrowse link
G FBXO22 F-box protein 22 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19319192) Ensembl
MGI
TreeGrafter		 PMID:19319192 GO_REF:0000107 GO_REF:0000118 NCBI chr26:7,357,813...7,387,344
Ensembl chr26:7,356,064...7,387,274 		JBrowse link
G FBXW8 F-box and WD repeat domain containing 8 involved_in ISO (MGI:6148490|PMID:29153991) UniProt PMID:29153991 MGI:6148490 NCBI chr11:112,226,545...112,337,164
Ensembl chr11:112,226,594...112,341,225 		JBrowse link
G GABARAP GABA type A receptor-associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:6,614,478...6,616,516
Ensembl chr16:6,614,688...6,616,443 		JBrowse link
G GBA1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (MGI:5501380|PMID:23707074) ParkinsonsUK-UCL PMID:23707074 MGI:5501380 NCBI chr20:8,598,110...8,631,517
Ensembl chr20:8,598,628...8,630,990 		JBrowse link
G GCLC glutamate-cysteine ligase catalytic subunit acts_upstream_of_or_within ISO (PMID:17189825) MGI PMID:17189825 NCBI chr17:19,012,994...19,060,617
Ensembl chr17:19,013,026...19,060,659 		JBrowse link
G GSK3A glycogen synthase kinase 3 alpha involved_in ISO (PMID:25897075) ARUK-UCL PMID:25897075 NCBI chr 6:36,434,966...36,447,676
Ensembl chr 6:36,435,578...36,447,633 		JBrowse link
G GSK3B glycogen synthase kinase 3 beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22660580) Ensembl
MGI		 PMID:22660580 GO_REF:0000107 NCBI chr22:60,732,449...61,002,735
Ensembl chr22:60,733,465...60,997,239 		JBrowse link
G HSPBP1 HSPA (Hsp70) binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:47,861,634...47,884,293
Ensembl chr 6:47,861,593...47,884,218 		JBrowse link
G IL33 interleukin 33 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22660580) Ensembl
MGI		 PMID:22660580 GO_REF:0000107 NCBI chr12:73,235,585...73,283,665
Ensembl chr12:73,237,406...73,252,436 		JBrowse link
G KLHL40 kelch like family member 40 involved_in ISO (MGI:5700633|PMID:25940086) UniProt PMID:25940086 MGI:5700633 NCBI chr22:4,141,759...4,149,158
Ensembl chr22:4,142,192...4,148,710 		JBrowse link
G LOC103221743 heat shock 70 kDa protein 1A involved_in ISO (PMID:24613385) UniProt PMID:24613385 NCBI chr17:40,191,695...40,194,459
Ensembl chr17:40,203,936...40,205,858 		JBrowse link
G LOC103221745 heat shock 70 kDa protein 1A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:40,203,647...40,206,028
Ensembl chr17:40,203,936...40,205,858 		JBrowse link
G LOC103223312 casein kinase I involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:20,992,927...21,025,866
Ensembl chr19:20,998,009...21,022,576 		JBrowse link
G LOC103227609 E3 ubiquitin-protein ligase ARIH2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:10,319,039...10,398,244
Ensembl chr22:10,328,154...10,385,184 		JBrowse link
G LOC119623494 heat shock 70 kDa protein 1A involved_in IEA TreeGrafter GO_REF:0000118
G LOC119623630 lysosomal acid glucosylceramidase involved_in IEA Ensembl GO_REF:0000107
G LRRK2 leucine rich repeat kinase 2 involved_in ISO (MGI:4454597|PMID:20457918) BHF-UCL PMID:20457918 MGI:4454597 NCBI chr11:36,490,775...36,634,215
Ensembl chr11:36,492,011...36,634,216 		JBrowse link
G MAPK8 mitogen-activated protein kinase 8 involved_in ISO (MGI:6148490|PMID:29153991) UniProt PMID:29153991 MGI:6148490 NCBI chr 9:43,356,603...43,489,066
Ensembl chr 9:43,356,308...43,393,425 		JBrowse link
G MAPK9 mitogen-activated protein kinase 9 involved_in ISO (MGI:6148490|PMID:29153991) UniProt PMID:29153991 MGI:6148490 NCBI chr23:81,965,330...82,026,414
Ensembl chr23:81,963,899...82,013,659 		JBrowse link
G MDM2 MDM2 proto-oncogene involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:64,434,203...64,465,490
Ensembl chr11:64,434,261...64,469,890 		JBrowse link
G NKD2 NKD inhibitor of WNT signaling pathway 2 involved_in ISO (PMID:20177058) BHF-UCL PMID:20177058 NCBI chr 4:857,938...884,840
Ensembl chr 4:858,809...884,758 		JBrowse link
G NOP53 NOP53 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:41,058,199...41,070,220
Ensembl chr 6:41,057,906...41,071,202 		JBrowse link
G NUB1 negative regulator of ubiquitin like proteins 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:119,525,757...119,559,412
Ensembl chr21:119,525,932...119,560,886 		JBrowse link
G PABIR1 PP2A Aalpha (PPP2R1A) and B55A (PPP2R2A) interacting phosphatase regulator 1 involved_in ISO (PMID:27588481) UniProt PMID:27588481 NCBI chr12:79,877,288...79,879,862
Ensembl chr12:79,877,416...79,878,279 		JBrowse link
G PIAS1 protein inhibitor of activated STAT 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:15,294,296...15,432,731
Ensembl chr26:15,297,934...15,432,659 		JBrowse link
G PLK1 polo like kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:21,388,957...21,408,574
Ensembl chr 5:21,396,204...21,410,718 		JBrowse link
G PLK2 polo like kinase 2 ISO RGD PMID:18723513 RGD:7241135 NCBI chr 4:54,629,868...54,636,134
Ensembl chr 4:54,629,194...54,636,032 		JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in ISO (PMID:17030191) BHF-UCL PMID:17030191 NCBI chr11:38,696,771...38,819,324
Ensembl chr11:38,694,602...38,718,519 		JBrowse link
G PSEN1 presenilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:50,394,310...50,476,521
Ensembl chr24:50,405,590...50,472,132 		JBrowse link
G PSEN2 presenilin 2 involved_in ISO (MGI:4887523|PMID:20208556) BHF-UCL PMID:20208556 MGI:4887523 NCBI chr25:2,862,354...2,888,735
Ensembl chr25:2,862,251...2,877,386 		JBrowse link
G PSMD10 proteasome 26S subunit, non-ATPase 10 involved_in ISO (PMID:16023600) UniProt PMID:16023600 NCBI chr  X:95,931,710...95,939,145
Ensembl chr  X:95,931,466...95,939,218 		JBrowse link
G RACK1 receptor for activated C kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:82,800,211...82,805,769
Ensembl chr23:82,798,085...82,805,936 		JBrowse link
G RAD23A RAD23 homolog A, nucleotide excision repair protein involved_in ISO (PMID:26296656) CAFA PMID:26296656 NCBI chr 6:11,625,464...11,633,922
Ensembl chr 6:11,625,458...11,637,419 		JBrowse link
G RBX1 ring-box 1 involved_in ISO (PMID:14739464) UniProt PMID:14739464 NCBI chr19:23,500,361...23,521,676
Ensembl chr19:23,500,356...23,522,723 		JBrowse link
G RCHY1 ring finger and CHY zinc finger domain containing 1 involved_in ISO (PMID:19483087) UniProt PMID:19483087 NCBI chr 7:23,989,028...24,025,151
Ensembl chr 7:23,989,745...24,025,437 		JBrowse link
G RFPL1 ret finger protein like 1 involved_in ISO (PMID:20725088) UniProt PMID:20725088 NCBI chr19:12,312,974...12,316,146 JBrowse link
G RNF14 ring finger protein 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:44,602,152...44,623,711
Ensembl chr23:44,602,783...44,623,912 		JBrowse link
G RNF144A ring finger protein 144A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:100,646,376...100,765,860
Ensembl chr14:100,644,270...100,743,634 		JBrowse link
G RNF144B ring finger protein 144B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:53,683,645...53,866,961
Ensembl chr17:53,683,576...53,764,106 		JBrowse link
G RNF180 ring finger protein 180 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18363970), (PMID:23926250) TreeGrafter
MGI		 PMID:18363970 PMID:23926250 GO_REF:0000118 NCBI chr 4:60,340,926...60,555,932
Ensembl chr 4:60,340,804...60,557,227 		JBrowse link
G RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:95,107,679...95,161,592
Ensembl chr 8:95,105,016...95,139,012 		JBrowse link
G RNF19B ring finger protein 19B involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr20:99,908,165...99,934,421 JBrowse link
G RNF217 ring finger protein 217 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr13:48,622,137...48,743,635 JBrowse link
G SH3RF1 SH3 domain containing ring finger 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:115,330,171...115,504,443
Ensembl chr 7:115,332,460...115,504,411 		JBrowse link
G SH3RF2 SH3 domain containing ring finger 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:48,512,549...48,655,652
Ensembl chr23:48,512,548...48,658,365 		JBrowse link
G SH3RF3 SH3 domain containing ring finger 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:12,657,402...13,030,467
Ensembl chr14:12,871,670...13,030,464 		JBrowse link
G SIRT2 sirtuin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:33,493,106...33,518,793
Ensembl chr 6:33,493,079...33,518,647 		JBrowse link
G SIRT6 sirtuin 6 involved_in ISO (PMID:27457971) CACAO PMID:27457971 NCBI chr 6:3,924,230...3,932,583
Ensembl chr 6:3,924,230...3,932,590 		JBrowse link
G SOCS4 suppressor of cytokine signaling 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr24:32,198,438...32,227,240
Ensembl chr24:32,220,800...32,222,122 		JBrowse link
G SOCS5 suppressor of cytokine signaling 5 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr14:60,330,192...60,335,477
Ensembl chr14:60,431,401...60,433,011
Ensembl chr14:60,431,401...60,433,011 		JBrowse link
G STUB1 STIP1 homology and U-box containing protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:599,907...602,549
Ensembl chr 5:599,819...605,567 		JBrowse link
G SUMO1 small ubiquitin like modifier 1 involved_in ISO (PMID:18408734) UniProt PMID:18408734 NCBI chr10:87,917,324...87,957,152 JBrowse link
G SUMO2 small ubiquitin like modifier 2 involved_in ISO (PMID:18408734) UniProt PMID:18408734 NCBI chr16:46,479,399...46,495,591
Ensembl chr16:46,479,406...46,496,114 		JBrowse link
G TAF1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:15053879) BHF-UCL PMID:15053879 NCBI chr  X:61,167,743...61,269,000
Ensembl chr  X:61,167,589...61,268,839 		JBrowse link
G TRIB1 tribbles pseudokinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:120,013,757...120,021,823
Ensembl chr 8:120,014,339...120,019,887 		JBrowse link
G TRIB2 tribbles pseudokinase 2 involved_in ISO (MGI:4457446|PMID:20410507) BHF-UCL PMID:20410507 MGI:4457446 NCBI chr14:94,887,152...94,913,219 JBrowse link
G TRIB2 tribbles pseudokinase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr14:94,903,597...94,912,033 JBrowse link
G TRIB3 tribbles pseudokinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:35,512,911...35,530,856
Ensembl chr 2:35,512,861...35,530,966 		JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chr 8:44,167,214...44,218,074 JBrowse link
G USP5 ubiquitin specific peptidase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:6,885,401...6,899,983
Ensembl chr11:6,885,311...6,898,442 		JBrowse link
G VCP valosin containing protein involved_in ISO (PMID:9452483) BHF-UCL PMID:9452483 NCBI chr12:45,545,139...45,560,702
Ensembl chr12:45,545,507...45,563,380 		JBrowse link
G ZER1 zyg-11 related cell cycle regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:9,371,038...9,413,127
Ensembl chr12:9,371,701...9,413,134 		JBrowse link
G ZFAND2A zinc finger AN1-type containing 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16973439) Ensembl
MGI		 PMID:16973439 GO_REF:0000107 NCBI chr28:20,434,434...20,441,641
Ensembl chr28:20,434,495...20,442,322 		JBrowse link
G ZYG11B zyg-11 family member B, cell cycle regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:80,120,970...80,214,538
Ensembl chr20:80,122,056...80,214,422 		JBrowse link
positive regulation of proteasomal ubiquitin-dependent protein catabolic process involved in cellular response to hypoxia term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLK3 polo like kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:87,989,573...87,995,396
Ensembl chr20:87,989,574...87,994,478 		JBrowse link
positive regulation of retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCAP31 B cell receptor associated protein 31 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:128,128,739...128,152,617
Ensembl chr  X:128,128,271...128,151,823 		JBrowse link
G EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:41,253,861...41,286,185
Ensembl chr22:41,253,989...41,282,140 		JBrowse link
G EDEM2 ER degradation enhancing alpha-mannosidase like protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:39,417,994...39,452,398
Ensembl chr 2:39,417,590...39,452,497 		JBrowse link
proteasomal ubiquitin-independent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENC1 ectodermal-neural cortex 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:68,980,137...68,994,112
Ensembl chr 4:68,987,452...68,989,218 		JBrowse link
G MIDN midnolin involved_in ISO (PMID:37616343) UniProt PMID:37616343 NCBI chr 6:1,017,141...1,027,577
Ensembl chr 6:1,018,290...1,027,618 		JBrowse link
G NFE2L2 NFE2 like bZIP transcription factor 2 involved_in ISO (PMID:19424503) UniProt PMID:19424503 NCBI chr10:62,789,647...62,825,651
Ensembl chr10:62,790,124...62,825,339 		JBrowse link
G PSME4 proteasome activator subunit 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:52,999,960...53,108,624
Ensembl chr14:52,999,960...53,108,885 		JBrowse link
proteasome-mediated ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGAP3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 acts_upstream_of_or_within ISO (PMID:16461359) MGI PMID:16461359 NCBI chr21:119,268,918...119,327,623 JBrowse link
G AKT1 AKT serine/threonine kinase 1 acts_upstream_of ISO (PMID:15937334) MGI PMID:15937334 NCBI chr24:82,704,087...82,730,711
Ensembl chr24:82,704,068...82,727,698 		JBrowse link
G AMBRA1 autophagy and beclin 1 regulator 1 involved_in ISO (PMID:33854232), (PMID:33854235), (PMID:33854239) UniProt PMID:33854232 PMID:33854235 PMID:33854239 NCBI chr 1:18,777,807...18,932,784
Ensembl chr 1:18,734,926...18,932,785 		JBrowse link
G ANKRD9 ankyrin repeat domain 9 involved_in ISO (PMID:30293565) UniProt PMID:30293565 NCBI chr24:80,435,797...80,438,660
Ensembl chr24:80,435,892...80,436,845 		JBrowse link
G APPBP2 amyloid beta precursor protein binding protein 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:31,674,090...31,754,323
Ensembl chr16:31,678,566...31,754,309 		JBrowse link
G ARMC8 armadillo repeat containing 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:52,244,803...52,354,877
Ensembl chr15:52,243,835...52,355,232 		JBrowse link
G ARRB1 arrestin beta 1 involved_in ISO (PMID:15878855) UniProt PMID:15878855 NCBI chr 1:66,489,358...66,580,167
Ensembl chr 1:66,490,102...66,580,154 		JBrowse link
G ARRB2 arrestin beta 2 involved_in ISO (PMID:15878855) UniProt PMID:15878855 NCBI chr16:4,191,040...4,202,382
Ensembl chr16:4,191,172...4,202,385 		JBrowse link
G ASB2 ankyrin repeat and SOCS box containing 2 involved_in ISO (PMID:21119685)
(MGI:5510317|PMID:23632887), (MGI:6718235|PMID:29374072)		 UniProt PMID:21119685 PMID:23632887 PMID:29374072 MGI:5510317 MGI:6718235 NCBI chr24:71,687,282...71,730,684
Ensembl chr24:71,687,238...71,730,696 		JBrowse link
G ATXN3 ataxin 3 involved_in ISO (MGI:5318000|PMID:21855799) UniProt PMID:21855799 MGI:5318000 NCBI chr24:69,810,433...69,855,308 JBrowse link
G AURKA aurora kinase A involved_in
acts_upstream_of		 IEA
ISO		 (PMID:17060449) Ensembl
MGI		 PMID:17060449 GO_REF:0000107 NCBI chr 2:7,730,060...7,753,167
Ensembl chr 2:7,734,128...7,752,395 		JBrowse link
G BAG6 BAG cochaperone 6 involved_in ISO (MGI:5780912|PMID:26692333) UniProt PMID:26692333 MGI:5780912
G BFAR bifunctional apoptosis regulator involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:14,092,049...14,132,270
Ensembl chr 5:14,092,097...14,133,132 		JBrowse link
G BIRC2 baculoviral IAP repeat containing 2 involved_in ISO (PMID:11907583) UniProt PMID:11907583 NCBI chr 1:93,721,449...93,746,638 JBrowse link
G BMAL1 basic helix-loop-helix ARNT like 1 involved_in ISO (MGI:5495336|PMID:23395176) UniProt PMID:23395176 MGI:5495336 NCBI chr 1:51,430,670...51,540,344
Ensembl chr 1:51,431,180...51,462,674 		JBrowse link
G BTRC beta-transducin repeat containing E3 ubiquitin protein ligase involved_in ISO (PMID:15917222) UniProt PMID:15917222 NCBI chr 9:94,333,046...94,581,327
Ensembl chr 9:94,376,055...94,574,678 		JBrowse link
G CD2AP CD2 associated protein ISO RGD PMID:15001553 RGD:1302417 NCBI chr17:24,664,245...24,815,786
Ensembl chr17:24,663,872...24,815,829 		JBrowse link
G CDC34 cell division cycle 34, ubiqiutin conjugating enzyme involved_in ISO (PMID:10373550), (PMID:20347421) UniProt PMID:10373550 PMID:20347421 NCBI chr 6:262,818...280,041
Ensembl chr 6:262,860...281,513 		JBrowse link
G CLEC16A C-type lectin domain containing 16A acts_upstream_of ISO (PMID:24949970) MGI PMID:24949970 NCBI chr 5:10,420,866...10,658,370
Ensembl chr 5:10,420,931...10,658,507 		JBrowse link
G CLOCK clock circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:13,015,198...13,134,741
Ensembl chr 7:13,051,454...13,127,240 		JBrowse link
G COP1 COP1 E3 ubiquitin ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr25:53,057,479...53,316,662
Ensembl chr25:53,057,784...53,314,398 		JBrowse link
G CRBN cereblon involved_in ISO (PMID:20223979) UniProt PMID:20223979 NCBI chr22:39,248,087...39,277,778
Ensembl chr22:39,248,905...39,277,749 		JBrowse link
G CTNNB1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:2,679,488...2,725,034
Ensembl chr22:2,684,022...2,723,949 		JBrowse link
G CUL1 cullin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:117,271,477...117,373,983
Ensembl chr21:117,271,548...117,374,379 		JBrowse link
G CUL3 cullin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20811152) Ensembl
MGI		 PMID:20811152 GO_REF:0000107 NCBI chr10:110,425,895...110,541,431
Ensembl chr10:110,425,076...110,541,538 		JBrowse link
G CUL4A cullin 4A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16467204) Ensembl
MGI		 PMID:16467204 GO_REF:0000107 NCBI chr 3:91,211,238...91,267,236
Ensembl chr 3:91,212,193...91,268,838 		JBrowse link
G DCAF11 DDB1 and CUL4 associated factor 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:1,100,974...1,110,283
Ensembl chr24:1,101,653...1,111,965 		JBrowse link
G DCAF13 DDB1 and CUL4 associated factor 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:98,271,304...98,297,950 JBrowse link
G DDB1 damage specific DNA binding protein 1 involved_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:12,508,712...12,543,127
Ensembl chr 1:12,508,443...12,544,913 		JBrowse link
G DDIT3 DNA damage inducible transcript 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:53,424,693...53,429,094
Ensembl chr11:53,424,868...53,425,576 		JBrowse link
G DERL1 derlin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:117,587,373...117,617,233
Ensembl chr 8:117,586,496...117,617,194 		JBrowse link
G DNAJB2 DnaJ heat shock protein family (Hsp40) member B2 involved_in ISO (PMID:21625540) UniProt PMID:21625540 NCBI chr10:105,185,987...105,193,749
Ensembl chr10:105,186,608...105,194,574 		JBrowse link
G DTL denticleless E3 ubiquitin protein ligase homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:17,418,078...17,485,320
Ensembl chr25:17,418,090...17,485,164 		JBrowse link
G DTX4 deltex E3 ubiquitin ligase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:14,354,752...14,390,630
Ensembl chr 1:14,358,001...14,390,239 		JBrowse link
G EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 acts_upstream_of_or_within ISO (PMID:16431915) MGI PMID:16431915 NCBI chr25:44,619,717...44,688,794
Ensembl chr25:44,619,861...44,685,227 		JBrowse link
G EPM2A EPM2A glucan phosphatase, laforin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24914213) Ensembl
MGI		 PMID:24914213 GO_REF:0000107 NCBI chr13:26,152,974...26,266,676
Ensembl chr13:26,153,319...26,264,568 		JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:57,048,262...57,128,338
Ensembl chr 4:57,045,018...57,128,307 		JBrowse link
G FAF2 Fas associated factor family member 2 involved_in ISO (MGI:5780912|PMID:26692333) UniProt PMID:26692333 MGI:5780912 NCBI chr23:78,421,558...78,515,671
Ensembl chr23:78,456,545...78,516,245 		JBrowse link
G FBXL17 F-box and leucine rich repeat protein 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:11,307,953...11,839,483
Ensembl chr23:11,634,770...11,839,734 		JBrowse link
G FBXL19 F-box and leucine rich repeat protein 19 acts_upstream_of_or_within
involved_in		 ISO (PMID:22660580)
(PMID:23512198)		 MGI
UniProt		 PMID:22660580 PMID:23512198 NCBI chr 5:27,612,889...27,638,403
Ensembl chr 5:27,614,479...27,638,636 		JBrowse link
G FBXL22 F-box and leucine rich repeat protein 22 acts_upstream_of_or_within ISO (PMID:22972877) MGI PMID:22972877 NCBI chr26:19,937,405...19,944,579 JBrowse link
G FBXL3 F-box and leucine rich repeat protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:56,089,147...56,111,472
Ensembl chr 3:56,088,938...56,105,977 		JBrowse link
G FBXO22 F-box protein 22 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:19319192) Ensembl
MGI		 PMID:19319192 GO_REF:0000107 NCBI chr26:7,357,813...7,387,344
Ensembl chr26:7,356,064...7,387,274 		JBrowse link
G FBXO45 F-box protein 45 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:90,632,389...90,647,431
Ensembl chr15:90,629,330...90,647,191 		JBrowse link
G FBXO7 F-box protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:15,300,135...15,324,256
Ensembl chr19:15,300,158...15,323,956 		JBrowse link
G FBXO9 F-box protein 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:19,472,653...19,509,783
Ensembl chr17:19,469,964...19,506,033 		JBrowse link
G FBXW11 F-box and WD repeat domain containing 11 involved_in ISO (PMID:10644755), (PMID:20347421) UniProt PMID:10644755 PMID:20347421 NCBI chr23:74,015,964...74,154,285
Ensembl chr23:74,015,964...74,154,062 		JBrowse link
G FBXW5 F-box and WD repeat domain containing 5 involved_in ISO (PMID:18381890) UniProt PMID:18381890 NCBI chr12:1,246,416...1,250,930
Ensembl chr12:1,246,702...1,252,688 		JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:98,894,261...99,105,955
Ensembl chr 7:98,892,504...99,106,084 		JBrowse link
G FEM1B fem-1 homolog B involved_in ISO (PMID:24076122) UniProt PMID:24076122 NCBI chr26:15,183,965...15,201,394 JBrowse link
G FEM1C fem-1 homolog C involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:18,773,359...18,797,316
Ensembl chr23:18,771,956...18,797,128 		JBrowse link
G GBA1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) MGI PMID:23707074 NCBI chr20:8,598,110...8,631,517
Ensembl chr20:8,598,628...8,630,990 		JBrowse link
G GID4 GID complex subunit 4 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:17,079,643...17,108,651
Ensembl chr16:17,079,800...17,105,526 		JBrowse link
G GID8 GID complex subunit 8 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:1,277,963...1,284,925
Ensembl chr 2:1,274,813...1,284,944 		JBrowse link
G GSK3A glycogen synthase kinase 3 alpha involved_in ISO (MGI:5514334|PMID:16543145) UniProt PMID:16543145 MGI:5514334 NCBI chr 6:36,434,966...36,447,676
Ensembl chr 6:36,435,578...36,447,633 		JBrowse link
G HECTD3 HECT domain E3 ubiquitin protein ligase 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:87,776,209...87,785,678
Ensembl chr20:87,777,041...87,784,734 		JBrowse link
G HERC2 HECT and RLD domain containing E3 ubiquitin protein ligase 2 involved_in ISO (MGI:5780912|PMID:26692333) UniProt PMID:26692333 MGI:5780912 NCBI chr26:53,760,172...54,007,356
Ensembl chr26:53,792,593...54,007,489 		JBrowse link
G IFI27 interferon alpha inducible protein 27 involved_in ISO (PMID:27194766) UniProt PMID:27194766 NCBI chr24:71,884,130...71,890,813 JBrowse link
G ITCH itchy E3 ubiquitin protein ligase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:38,671,170...38,808,621
Ensembl chr 2:38,701,396...38,805,005 		JBrowse link
G KAT5 lysine acetyltransferase 5 involved_in ISO (PMID:18397884) UniProt PMID:18397884 NCBI chr 1:8,528,097...8,544,512
Ensembl chr 1:8,526,788...8,544,972 		JBrowse link
G KBTBD6 kelch repeat and BTB domain containing 6 involved_in ISO (PMID:25684205) UniProt PMID:25684205 NCBI chr 3:19,388,132...19,391,857
Ensembl chr 3:19,389,455...19,391,482 		JBrowse link
G KBTBD7 kelch repeat and BTB domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:19,449,319...19,455,117
Ensembl chr 3:19,451,622...19,453,679 		JBrowse link
G KCMF1 potassium channel modulatory factor 1 involved_in ISO (PMID:37891180), (PMID:38297121) UniProt PMID:37891180 PMID:38297121 NCBI chr16:20,659,454...20,684,521 JBrowse link
G KCTD10 potassium channel tetramerization domain containing 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:104,684,625...104,715,013
Ensembl chr11:104,683,777...104,714,974 		JBrowse link
G KCTD13 potassium channel tetramerization domain containing 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:26,727,963...26,764,041
Ensembl chr 5:26,728,168...26,764,910 		JBrowse link
G KCTD17 potassium channel tetramerization domain containing 17 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:19,757,249...19,769,252 JBrowse link
G KCTD2 potassium channel tetramerization domain containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:46,606,832...46,625,366
Ensembl chr16:46,609,675...46,625,289 		JBrowse link
G KCTD5 potassium channel tetramerization domain containing 5 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 5:2,451,615...2,467,528 JBrowse link
G KIF14 kinesin family member 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:28,789,952...28,856,713
Ensembl chr25:28,789,614...28,856,570 		JBrowse link
G KLHDC2 kelch domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:26,816,634...26,834,057
Ensembl chr24:26,816,842...26,833,870 		JBrowse link
G KLHDC3 kelch domain containing 3 involved_in ISO (PMID:26138980) UniProt PMID:26138980 NCBI chr17:29,138,568...29,145,794
Ensembl chr17:29,138,459...29,145,787 		JBrowse link
G KLHL20 kelch like family member 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:55,407,648...55,473,195
Ensembl chr25:55,405,713...55,473,175 		JBrowse link
G KLHL22 kelch like family member 22 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:5,211,732...5,264,953
Ensembl chr19:5,218,653...5,265,063 		JBrowse link
G KLHL3 kelch like family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:40,301,406...40,419,927
Ensembl chr23:40,301,414...40,417,839 		JBrowse link
G KLHL40 kelch like family member 40 acts_upstream_of ISO (PMID:24960163) MGI PMID:24960163 NCBI chr22:4,141,759...4,149,158
Ensembl chr22:4,142,192...4,148,710 		JBrowse link
G KLHL42 kelch like family member 42 involved_in ISO (PMID:19261606) UniProt PMID:19261606 NCBI chr11:27,502,268...27,522,280
Ensembl chr11:27,502,022...27,520,136 		JBrowse link
G LOC103215169 26S proteasome regulatory subunit 4-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:39,051,494...39,052,900 JBrowse link
G LOC103222918 melanoma antigen preferentially expressed in tumors involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,413,462...3,426,379
Ensembl chr19:3,414,838...3,426,422 		JBrowse link
G LOC103231001 E3 ubiquitin-protein ligase RNF187 involved_in ISO (PMID:20852630) UniProt PMID:20852630 NCBI chr25:1,228,235...1,235,292 JBrowse link
G LOC103247827 ranBP-type and C3HC4-type zinc finger-containing protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:35,537,387...35,559,628
Ensembl chr 2:35,538,127...35,560,129 		JBrowse link
G LOC119623630 lysosomal acid glucosylceramidase involved_in IEA Ensembl GO_REF:0000107
G MAEA macrophage erythroblast attacher, E3 ubiquitin ligase involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr27:47,425,276...47,473,618
Ensembl chr27:47,425,185...47,473,626 		JBrowse link
G MARCHF6 membrane associated ring-CH-type finger 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:9,891,847...9,970,617
Ensembl chr 4:9,891,580...9,970,300 		JBrowse link
G MTA1 metastasis associated 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:83,315,917...83,368,746 JBrowse link
G MTM1 myotubularin 1 acts_upstream_of ISO (PMID:23695157) MGI PMID:23695157 NCBI chr  X:125,151,279...125,250,816
Ensembl chr  X:125,174,289...125,249,588 		JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19386237) Ensembl
MGI		 PMID:19386237 GO_REF:0000107 NCBI chr16:63,735,411...63,744,365 JBrowse link
G NEDD4L NEDD4 like E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:21,326,276...21,683,817
Ensembl chr18:21,327,567...21,683,905 		JBrowse link
G NFE2L2 NFE2 like bZIP transcription factor 2 involved_in ISO (PMID:15983046) UniProt PMID:15983046 NCBI chr10:62,789,647...62,825,651
Ensembl chr10:62,790,124...62,825,339 		JBrowse link
G NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24914213) Ensembl
MGI
TreeGrafter		 PMID:24914213 GO_REF:0000107 GO_REF:0000118 NCBI chr17:54,017,947...54,020,015
Ensembl chr17:54,018,703...54,019,887 		JBrowse link
G NSFL1C NSFL1 cofactor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:55,102,384...55,127,928
Ensembl chr 2:55,103,266...55,126,341 		JBrowse link
G OTUD5 OTU deubiquitinase 5 acts_upstream_of_or_within ISO (PMID:25470037) MGI PMID:25470037 NCBI chr  X:46,041,348...46,077,195 JBrowse link
G PBK PDZ binding kinase involved_in
acts_upstream_of		 IEA
ISO		 (PMID:21715333) Ensembl
MGI		 PMID:21715333 GO_REF:0000107 NCBI chr 8:25,921,124...25,943,349
Ensembl chr 8:25,921,133...25,943,062 		JBrowse link
G PCBP2 poly(rC) binding protein 2 involved_in ISO (PMID:19881509) UniProt PMID:19881509 NCBI chr11:49,548,615...49,580,962 JBrowse link
G PCNP PEST proteolytic signal containing nuclear protein involved_in ISO (PMID:14741369) HGNC-UCL PMID:14741369 NCBI chr22:79,272,786...79,292,572 JBrowse link
G PELI1 pellino E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:42,864,857...42,930,315
Ensembl chr14:42,864,897...42,930,394 		JBrowse link
G PJA2 praja ring finger ubiquitin ligase 2 involved_in ISO (PMID:33934390) UniProt PMID:33934390 NCBI chr23:12,753,505...12,825,279
Ensembl chr23:12,753,513...12,796,482 		JBrowse link
G PML PML nuclear body scaffold involved_in ISO (PMID:22406621) UniProt PMID:22406621 NCBI chr26:9,441,998...9,494,949
Ensembl chr26:9,451,112...9,494,931 		JBrowse link
G PMP22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (PMID:15748170) MGI PMID:15748170 NCBI chr16:14,527,892...14,563,223
Ensembl chr16:14,527,672...14,563,171 		JBrowse link
G PPP2CB protein phosphatase 2 catalytic subunit beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16717086) Ensembl
MGI		 PMID:16717086 GO_REF:0000107 NCBI chr 8:28,903,074...28,930,300
Ensembl chr 8:28,903,240...28,930,376 		JBrowse link
G PPP2R5C protein phosphatase 2 regulatory subunit B'gamma acts_upstream_of_or_within ISO (PMID:16717086) MGI PMID:16717086 NCBI chr24:79,703,316...79,875,379
Ensembl chr24:79,703,312...79,875,389 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:11439185), (PMID:21376232) ParkinsonsUK-UCL PMID:11439185 PMID:21376232 NCBI chr13:88,856,056...90,329,379 JBrowse link
G PSMA5 proteasome 20S subunit alpha 5 involved_in IEA InterPro GO_REF:0000002 NCBI chr20:24,120,613...24,146,369
Ensembl chr20:24,120,562...24,148,736 		JBrowse link
G PSMB3 proteasome 20S subunit beta 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:67,430,987...67,442,802
Ensembl chr16:67,431,052...67,442,814 		JBrowse link
G PSMB5 proteasome 20S subunit beta 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15198663) Ensembl
MGI		 PMID:15198663 GO_REF:0000107 NCBI chr29:23,394,820...23,403,953
Ensembl chr29:23,390,401...23,403,658 		JBrowse link
G PSMC1 proteasome 26S subunit, ATPase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:67,979,449...67,995,103 JBrowse link
G PSMC2 proteasome 26S subunit, ATPase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:72,323,691...72,341,647
Ensembl chr21:72,323,803...72,341,488 		JBrowse link
G PSMC3 proteasome 26S subunit, ATPase 3 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 1:17,883,824...17,898,451 JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:34,486,303...34,495,392
Ensembl chr 6:34,486,338...34,495,251 		JBrowse link
G PSMC5 proteasome 26S subunit, ATPase 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:57,457,670...57,462,321
Ensembl chr16:57,457,720...57,462,249 		JBrowse link
G PSMC6 proteasome 26S subunit, ATPase 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:29,784,825...29,807,701
Ensembl chr24:29,784,826...29,807,490 		JBrowse link
G PSMD1 proteasome 26S subunit, non-ATPase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:117,078,347...117,199,640
Ensembl chr10:117,077,881...117,197,586 		JBrowse link
G PSMD14 proteasome 26S subunit, non-ATPase 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:46,703,876...46,814,938
Ensembl chr10:46,704,098...46,815,132 		JBrowse link
G PSMD2 proteasome 26S subunit ubiquitin receptor, non-ATPase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:5,111,127...5,121,159
Ensembl chr15:5,110,989...5,121,099 		JBrowse link
G PSMD6 proteasome 26S subunit, non-ATPase 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:25,044,616...25,056,938
Ensembl chr22:25,027,762...25,056,813 		JBrowse link
G PSMD7 proteasome 26S subunit, non-ATPase 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:57,433,469...57,443,013
Ensembl chr 5:57,433,472...57,443,337 		JBrowse link
G PSMD8 proteasome 26S subunit, non-ATPase 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:33,016,157...33,026,189
Ensembl chr 6:33,016,255...33,026,425 		JBrowse link
G PSMF1 proteasome inhibitor subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:55,373,939...55,415,928
Ensembl chr 2:55,376,171...55,415,893 		JBrowse link
G RAD23A RAD23 homolog A, nucleotide excision repair protein involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr 6:11,625,464...11,633,922
Ensembl chr 6:11,625,458...11,637,419 		JBrowse link
G RAD23B RAD23 homolog B, nucleotide excision repair protein involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr12:32,203,501...32,250,555
Ensembl chr12:32,204,893...32,250,570 		JBrowse link
G RBCK1 RANBP2-type and C3HC4-type zinc finger containing 1 involved_in ISO (PMID:17449468) UniProt PMID:17449468
G RBX1 ring-box 1 involved_in ISO (PMID:10230407), (PMID:20389280), (PMID:23453970), (PMID:29769719), (PMID:34480022) UniProt PMID:10230407 PMID:20389280 PMID:23453970 PMID:29769719 PMID:34480022 NCBI chr19:23,500,361...23,521,676
Ensembl chr19:23,500,356...23,522,723 		JBrowse link
G RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:28,515,393...28,593,289
Ensembl chr16:28,518,231...28,533,070 		JBrowse link
G RHOBTB3 Rho related BTB domain containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:89,605,801...89,670,433
Ensembl chr 4:89,606,204...89,670,669 		JBrowse link
G RMND5A required for meiotic nuclear division 5 homolog A involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr14:18,892,450...18,954,348
Ensembl chr14:18,892,316...18,954,066 		JBrowse link
G RMND5B required for meiotic nuclear division 5 homolog B involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr23:79,823,479...79,846,059
Ensembl chr23:79,823,565...79,841,104 		JBrowse link
G RNF122 ring finger protein 122 involved_in ISO (PMID:20553626) UniProt PMID:20553626 NCBI chr 8:31,630,559...31,650,321
Ensembl chr 8:31,630,244...31,650,398 		JBrowse link
G RNF126 ring finger protein 126 involved_in ISO (PMID:24981174) UniProt PMID:24981174 NCBI chr 6:392,717...409,139 JBrowse link
G RNF170 ring finger protein 170 acts_upstream_of_or_within ISO (PMID:31076723) MGI PMID:31076723 NCBI chr 8:40,852,995...40,896,800
Ensembl chr 8:40,850,552...40,896,887 		JBrowse link
G RNF186 ring finger protein 186 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:112,729,333...112,732,063
Ensembl chr20:112,731,000...112,731,683 		JBrowse link
G RNF187 ring finger protein 187 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr25:1,229,945...1,234,160 JBrowse link
G RNF216 ring finger protein 216 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr28:15,955,499...16,114,307
Ensembl chr28:15,954,803...16,117,759 		JBrowse link
G RNF34 ring finger protein 34 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:116,777,294...116,800,816
Ensembl chr11:116,777,419...116,800,035 		JBrowse link
G RNF4 ring finger protein 4 involved_in ISO (PMID:18408734), (PMID:20212317), (PMID:20943951) UniProt PMID:18408734 PMID:20212317 PMID:20943951 NCBI chr27:46,245,786...46,290,671 JBrowse link
G SENP1 SUMO specific peptidase 1 acts_upstream_of ISO (PMID:17981124) MGI PMID:17981124 NCBI chr11:44,272,371...44,334,787 JBrowse link
G SH3BGRL SH3 domain binding glutamate rich protein like involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:70,201,334...70,303,432
Ensembl chr  X:70,200,824...70,304,503 		JBrowse link
G SHARPIN SHANK associated RH domain interactor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:138,310,036...138,315,120
Ensembl chr 8:138,307,581...138,315,101 		JBrowse link
G SIAH1 siah E3 ubiquitin protein ligase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:34,168,905...34,192,548
Ensembl chr 5:34,169,985...34,174,293 		JBrowse link
G SIAH2 siah E3 ubiquitin protein ligase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:39,939,209...39,960,750
Ensembl chr15:39,939,832...39,959,734 		JBrowse link
G SIAH3 siah E3 ubiquitin protein ligase family member 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:23,840,947...23,909,954
Ensembl chr 3:23,841,195...23,908,631 		JBrowse link
G SIRT1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:63,463,059...63,497,893
Ensembl chr 9:63,462,389...63,497,867 		JBrowse link
G SIRT2 sirtuin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:33,493,106...33,518,793
Ensembl chr 6:33,493,079...33,518,647 		JBrowse link
G SKP1 S-phase kinase associated protein 1 involved_in ISO (PMID:15145941), (PMID:34480022) UniProt PMID:15145941 PMID:34480022 NCBI chr23:36,961,572...36,978,849
Ensembl chr23:36,962,328...36,978,757 		JBrowse link
G SKP2 S-phase kinase associated protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:35,009,114...35,040,518
Ensembl chr 4:35,009,076...35,042,632 		JBrowse link
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr28:14,019,733...14,141,588
Ensembl chr28:14,019,968...14,141,795 		JBrowse link
G SMURF2 SMAD specific E3 ubiquitin protein ligase 2 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr16:56,695,577...56,730,617 JBrowse link
G SPOP speckle type BTB/POZ protein involved_in
acts_upstream_of_or_within		 ISO (PMID:22085717), (PMID:32109420)
(PMID:20811152)		 UniProt
MGI		 PMID:20811152 PMID:22085717 PMID:32109420 NCBI chr16:69,990,554...70,073,241 JBrowse link
G SPOPL speckle type BTB/POZ protein like involved_in ISO (PMID:22632832) UniProt PMID:22632832 NCBI chr10:23,868,104...23,934,157 JBrowse link
G SPOPL speckle type BTB/POZ protein like involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr10:23,910,938...23,921,989 JBrowse link
G SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:122,398,856...122,474,175
Ensembl chr20:122,396,931...122,474,190 		JBrowse link
G SPSB3 splA/ryanodine receptor domain and SOCS box containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:1,685,741...1,691,542
Ensembl chr 5:1,686,095...1,691,489 		JBrowse link
G SPSB4 splA/ryanodine receptor domain and SOCS box containing 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:49,442,817...49,529,654
Ensembl chr15:49,442,864...49,515,357 		JBrowse link
G STUB1 STIP1 homology and U-box containing protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:599,907...602,549
Ensembl chr 5:599,819...605,567 		JBrowse link
G TBL1X transducin beta like 1 X-linked acts_upstream_of_or_within ISO (PMID:14980219) MGI PMID:14980219 NCBI chr  X:7,921,674...8,173,139
Ensembl chr  X:8,091,125...8,173,679 		JBrowse link
G TBL1XR1 TBL1X/Y related 1 acts_upstream_of_or_within ISO (PMID:14980219) MGI PMID:14980219 NCBI chr15:12,223,404...12,406,165
Ensembl chr15:12,224,226...12,402,908 		JBrowse link
G TBX21 T-box transcription factor 21 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:68,131,258...68,145,579
Ensembl chr16:68,131,536...68,144,415 		JBrowse link
G TNFAIP1 TNF alpha induced protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:22,102,499...22,111,739
Ensembl chr16:22,102,531...22,115,451 		JBrowse link
G TOPORS TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:47,702,638...47,714,309
Ensembl chr12:47,702,995...47,714,338 		JBrowse link
G TRIM13 tripartite motif containing 13 involved_in ISO (PMID:17314412), (PMID:21333377) UniProt PMID:17314412 PMID:21333377 NCBI chr 3:27,851,552...27,925,379
Ensembl chr 3:27,924,150...27,925,373 		JBrowse link
G TRIM2 tripartite motif containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:99,702,874...99,888,024
Ensembl chr 7:99,807,646...99,888,340 		JBrowse link
G TRIM26 tripartite motif containing 26 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:42,284,454...42,312,150
Ensembl chr17:42,283,713...42,313,292 		JBrowse link
G TRIM3 tripartite motif containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:58,353,338...58,378,959
Ensembl chr 1:58,354,117...58,379,100 		JBrowse link
G TRIM38 tripartite motif containing 38 acts_upstream_of_or_within ISO (PMID:22539786) MGI PMID:22539786 NCBI chr17:46,269,498...46,292,050
Ensembl chr17:46,268,289...46,292,092 		JBrowse link
G TRIM45 tripartite motif containing 45 involved_in ISO (PMID:36681779) UniProt PMID:36681779 NCBI chr20:16,604,908...16,615,567
Ensembl chr20:16,604,987...16,618,927 		JBrowse link
G TRIM63 tripartite motif containing 63 acts_upstream_of_or_within ISO (PMID:15601779) MGI PMID:15601779 NCBI chr20:106,676,299...106,714,394
Ensembl chr20:106,703,949...106,716,656 		JBrowse link
G TRIM71 tripartite motif containing 71 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:77,319,064...77,396,036
Ensembl chr15:77,319,148...77,390,066 		JBrowse link
G TRIM72 tripartite motif containing 72 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23965929) Ensembl
MGI
TreeGrafter		 PMID:23965929 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:27,903,202...27,915,950
Ensembl chr 5:27,903,479...27,918,527 		JBrowse link
G TRIM9 tripartite motif containing 9 involved_in ISO (PMID:20085810) UniProt PMID:20085810 NCBI chr24:28,060,365...28,202,708
Ensembl chr24:28,068,601...28,185,269 		JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:115,789,978...115,946,978
Ensembl chr10:115,789,605...115,945,753 		JBrowse link
G UBE2A ubiquitin conjugating enzyme E2 A involved_in IEA TreeGrafter GO_REF:0000118
G UBE2B ubiquitin conjugating enzyme E2 B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr23:37,180,011...37,199,250
Ensembl chr23:37,180,424...37,198,064 		JBrowse link
G UBE2D1 ubiquitin conjugating enzyme E2 D1 involved_in ISO (PMID:35927303) UniProt PMID:35927303 NCBI chr 9:72,930,653...72,965,351
Ensembl chr 9:72,928,836...72,965,286 		JBrowse link
G UBE2D3 ubiquitin conjugating enzyme E2 D3 involved_in
acts_upstream_of_or_within		 ISO (PMID:20347421)
(PMID:15601779)		 UniProt
MGI		 PMID:15601779 PMID:20347421 NCBI chr 7:50,895,052...50,927,726 JBrowse link
G UBE2H ubiquitin conjugating enzyme E2 H involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23965929) Ensembl
MGI		 PMID:23965929 GO_REF:0000107 NCBI chr21:98,456,848...98,574,105
Ensembl chr21:98,456,118...98,574,120 		JBrowse link
G UBE2I ubiquitin conjugating enzyme E2 I ISO RGD PMID:9013644 RGD:730030 NCBI chr 5:1,203,513...1,216,662
Ensembl chr 5:1,200,018...1,216,741 		JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N involved_in ISO (PMID:35927303) UniProt PMID:35927303 NCBI chr11:88,810,505...88,842,895 JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N involved_in IEA Ensembl GO_REF:0000107 Ensembl chr11:88,812,182...88,842,625 JBrowse link
G UBE2U ubiquitin conjugating enzyme E2 U involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr20:68,824,510...68,864,951 JBrowse link
G UBE2W ubiquitin conjugating enzyme E2 W involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:69,394,506...69,477,217
Ensembl chr 8:69,407,868...69,477,160 		JBrowse link
G UBE3A ubiquitin protein ligase E3A involved_in ISO (MGI:6330832|PMID:30020076) UniProt PMID:30020076 MGI:6330832 NCBI chr26:56,638,936...56,738,555
Ensembl chr26:56,666,162...56,736,737 		JBrowse link
G UBE3D ubiquitin protein ligase E3D involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:7,558,463...7,737,630
Ensembl chr13:7,558,321...7,737,485 		JBrowse link
G UBE4B ubiquitination factor E4B acts_upstream_of_or_within ISO (PMID:23509263) MGI PMID:23509263 NCBI chr20:121,597,775...121,744,986 JBrowse link
G UBE4B ubiquitination factor E4B involved_in IEA Ensembl GO_REF:0000107 Ensembl chr20:121,610,621...121,744,999 JBrowse link
G UBR1 ubiquitin protein ligase E3 component n-recognin 1 involved_in ISO (PMID:15548684) UniProt PMID:15548684 NCBI chr26:39,851,630...40,026,817 JBrowse link
G UBR2 ubiquitin protein ligase E3 component n-recognin 2 involved_in ISO (PMID:15548684) UniProt PMID:15548684 NCBI chr17:29,458,388...29,590,706
Ensembl chr17:29,458,374...29,590,687 		JBrowse link
G UBR4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:37891180), (PMID:38297121) UniProt PMID:37891180 PMID:38297121 NCBI chr20:113,354,561...113,493,936
Ensembl chr20:113,355,676...113,494,386 		JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 involved_in ISO (PMID:29378950) UniProt PMID:29378950 NCBI chr 8:97,104,325...97,257,317
Ensembl chr 8:97,103,220...97,257,440 		JBrowse link
G UBXN11 UBX domain protein 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:106,465,967...106,491,483
Ensembl chr20:106,465,966...106,491,466 		JBrowse link
G UBXN2A UBX domain protein 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:83,672,327...83,722,961
Ensembl chr14:83,673,282...83,703,633 		JBrowse link
G UBXN2B UBX domain protein 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:54,397,523...54,436,468
Ensembl chr 8:54,397,601...54,432,523 		JBrowse link
G UBXN7 UBX domain protein 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:90,770,294...90,844,744
Ensembl chr15:90,771,109...90,841,953 		JBrowse link
G USP14 ubiquitin specific peptidase 14 involved_in IEA InterPro GO_REF:0000002 NCBI chr18:59,568,934...59,622,467
Ensembl chr18:59,568,844...59,621,476 		JBrowse link
G USP25 ubiquitin specific peptidase 25 involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:76,660,926...76,805,153
Ensembl chr 2:76,662,159...76,791,688 		JBrowse link
G USP44 ubiquitin specific peptidase 44 involved_in ISO (MGI:5448515|PMID:21853124) UniProt PMID:21853124 MGI:5448515 NCBI chr11:90,915,107...90,950,142
Ensembl chr11:90,916,677...90,947,456 		JBrowse link
G VCP valosin containing protein involved_in ISO (MGI:5780912|PMID:26692333)
(PMID:20104022)		 UniProt PMID:20104022 PMID:26692333 MGI:5780912 NCBI chr12:45,545,139...45,560,702
Ensembl chr12:45,545,507...45,563,380 		JBrowse link
G VHL von Hippel-Lindau tumor suppressor involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:46,184,621...46,203,065
Ensembl chr22:46,184,756...46,204,428 		JBrowse link
G WDR26 WD repeat domain 26 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:5,339,056...5,393,173 JBrowse link
G WWP1 WW domain containing E3 ubiquitin protein ligase 1 involved_in ISO (MGI:4820705|PMID:19561640), (MGI:4820708|PMID:19047365) UniProt PMID:19047365 PMID:19561640 MGI:4820705 MGI:4820708 NCBI chr 8:81,529,520...81,651,478 JBrowse link
G WWP1 WW domain containing E3 ubiquitin protein ligase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr 8:81,596,624...81,650,240 JBrowse link
G WWP2 WW domain containing E3 ubiquitin protein ligase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:57,465,559...57,676,224
Ensembl chr 5:57,465,441...57,644,461 		JBrowse link
G ZFAND2A zinc finger AN1-type containing 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr28:20,434,434...20,441,641
Ensembl chr28:20,434,495...20,442,322 		JBrowse link
G ZFAND2B zinc finger AN1-type containing 2B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr10:105,110,419...105,113,614
Ensembl chr10:105,110,542...105,115,481 		JBrowse link
G ZNRF1 zinc and ring finger 1 involved_in ISO (MGI:5306704|PMID:22057101) UniProt PMID:22057101 MGI:5306704 NCBI chr 5:60,568,582...60,590,699 JBrowse link
G ZNRF1 zinc and ring finger 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr 5:52,702,740...52,703,165 JBrowse link
G ZNRF2 zinc and ring finger 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:27,930,382...28,097,754
Ensembl chr21:28,014,791...28,096,703 		JBrowse link
G ZNRF4 zinc and ring finger 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:5,127,332...5,129,463
Ensembl chr 6:5,127,865...5,129,154 		JBrowse link
G ZSWIM8 zinc finger SWIM-type containing 8 involved_in ISO (PMID:33184234) UniProt PMID:33184234 NCBI chr 9:57,570,394...57,587,039
Ensembl chr 9:57,569,603...57,583,508 		JBrowse link
regulation of ERAD pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in ISO (MGI:5613477|PMID:15147274) ParkinsonsUK-UCL PMID:15147274 MGI:5613477 NCBI chr 5:42,877,812...42,889,576
Ensembl chr 5:42,877,781...42,890,298 		JBrowse link
G USP19 ubiquitin specific peptidase 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:10,510,554...10,523,576
Ensembl chr22:10,510,423...10,523,487 		JBrowse link
regulation of proteasomal protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APOE apolipoprotein E involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:38,377,154...38,381,219
Ensembl chr 6:38,376,887...38,381,438 		JBrowse link
G BTRC beta-transducin repeat containing E3 ubiquitin protein ligase acts_upstream_of_or_within ISO (PMID:19103752) MGI PMID:19103752 NCBI chr 9:94,333,046...94,581,327
Ensembl chr 9:94,376,055...94,574,678 		JBrowse link
G DLGAP1 DLG associated protein 1 involved_in ISO PMID:15496675 BHF-UCL PMID:15496675 RGD:8553458 NCBI chr18:62,731,283...63,680,849
Ensembl chr18:62,730,753...63,091,140 		JBrowse link
G DNAAF4 dynein axonemal assembly factor 4 involved_in ISO (PMID:19423554) UniProt PMID:19423554 NCBI chr26:27,946,092...28,024,495 JBrowse link
G DNAAF4 dynein axonemal assembly factor 4 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr26:27,960,224...28,013,105 JBrowse link
G EPM2A EPM2A glucan phosphatase, laforin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27107699) Ensembl
MGI		 PMID:27107699 GO_REF:0000107 NCBI chr13:26,152,974...26,266,676
Ensembl chr13:26,153,319...26,264,568 		JBrowse link
G GPX1 glutathione peroxidase 1 involved_in ISO (PMID:12751788) BHF-UCL PMID:12751788 NCBI chr22:10,754,976...10,756,617 JBrowse link
G GPX1 glutathione peroxidase 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr22:10,754,970...10,757,057 JBrowse link
G LOC103245280 proteasome activator complex subunit 2-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:7,002,138...7,002,964 JBrowse link
G NFE2L1 NFE2 like bZIP transcription factor 1 acts_upstream_of_or_within ISO (PMID:29400713)
(PMID:27920251)		 MGI PMID:27920251 PMID:29400713 NCBI chr16:68,449,601...68,463,030
Ensembl chr16:68,449,898...68,461,190 		JBrowse link
G NUDT15 nudix hydrolase 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:25,966,148...25,974,143
Ensembl chr 3:25,966,876...25,973,647 		JBrowse link
G PITHD1 PITH domain containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31915251) Ensembl
MGI		 PMID:31915251 GO_REF:0000107 NCBI chr20:108,896,650...108,906,409
Ensembl chr20:108,897,503...108,906,289 		JBrowse link
G PKD1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO (PMID:23001567) MGI PMID:23001567 NCBI chr 5:1,985,165...2,031,518
Ensembl chr 5:1,983,632...2,015,551 		JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha involved_in ISO (PMID:17565987) UniProt PMID:17565987 NCBI chr 6:12,743,752...12,759,155 JBrowse link
G PSMD14 proteasome 26S subunit, non-ATPase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:46,703,876...46,814,938
Ensembl chr10:46,704,098...46,815,132 		JBrowse link
G PSME1 proteasome activator subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:1,122,086...1,124,907
Ensembl chr24:1,122,631...1,125,416 		JBrowse link
G PSME2 proteasome activator subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:1,129,389...1,133,289
Ensembl chr24:1,129,419...1,132,596 		JBrowse link
G PSME3 proteasome activator subunit 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:63,449,954...63,460,490
Ensembl chr16:63,452,105...63,460,199 		JBrowse link
G RHBDF1 rhomboid 5 homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:14,935...34,991
Ensembl chr 5:13,071...21,883 		JBrowse link
G TMF1 TATA element modulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:30,048,269...30,078,600
Ensembl chr22:30,045,685...30,078,414 		JBrowse link
G UBB ubiquitin B acts_upstream_of_or_within ISO (PMID:17571083) MGI PMID:17571083 NCBI chr16:15,279,271...15,289,111 JBrowse link
G UCHL5 ubiquitin C-terminal hydrolase L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:36,362,340...36,415,550
Ensembl chr25:36,364,027...36,414,762 		JBrowse link
G USP14 ubiquitin specific peptidase 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr18:59,568,934...59,622,467
Ensembl chr18:59,568,844...59,621,476 		JBrowse link
G USP25 ubiquitin specific peptidase 25 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:76,660,926...76,805,153
Ensembl chr 2:76,662,159...76,791,688 		JBrowse link
regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COMMD1 copper metabolism domain containing 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:44,839,460...45,068,764
Ensembl chr14:44,839,542...45,068,586 		JBrowse link
G DDA1 DET1 and DDB1 associated 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:15,815,956...15,826,873
Ensembl chr 6:15,816,030...15,826,232 		JBrowse link
G DESI1 desumoylating isopeptidase 1 involved_in ISO (PMID:29666234) UniProt PMID:29666234 NCBI chr19:24,135,266...24,160,391
Ensembl chr19:24,134,802...24,160,401 		JBrowse link
G FOXF2 forkhead box F2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:70,744,989...70,750,860
Ensembl chr17:70,745,011...70,750,652 		JBrowse link
G GLMN glomulin, FKBP associated protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22405651) MGI
Ensembl		 PMID:22405651 GO_REF:0000107 NCBI chr20:40,950,948...41,007,120
Ensembl chr20:40,951,342...41,008,791 		JBrowse link
G GNA12 G protein subunit alpha 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:18,778,768...18,890,420
Ensembl chr28:18,778,847...18,888,922 		JBrowse link
G LOC103231895 serine/threonine-protein kinase A-Raf involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:44,738,406...44,748,996
Ensembl chr  X:44,740,181...44,748,550 		JBrowse link
G LOC119623210 serine/threonine-protein kinase A-Raf involved_in IEA Ensembl GO_REF:0000107
G RAD23A RAD23 homolog A, nucleotide excision repair protein involved_in ISO (PMID:12643283) UniProt PMID:12643283 NCBI chr 6:11,625,464...11,633,922
Ensembl chr 6:11,625,458...11,637,419 		JBrowse link
G RAD23B RAD23 homolog B, nucleotide excision repair protein involved_in ISO (PMID:19435460) UniProt PMID:19435460 NCBI chr12:32,203,501...32,250,555
Ensembl chr12:32,204,893...32,250,570 		JBrowse link
G UBE2K ubiquitin conjugating enzyme E2 K involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18710920) Ensembl
MGI		 PMID:18710920 GO_REF:0000107 NCBI chr27:10,535,091...10,618,659
Ensembl chr27:10,539,402...10,618,573 		JBrowse link
G UBQLN4 ubiquilin 4 involved_in ISO (PMID:27113755)
(PMID:15280365)		 UniProt PMID:15280365 PMID:27113755 NCBI chr20:7,811,275...7,829,782 JBrowse link
G UBQLN4 ubiquilin 4 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr20:7,811,220...7,821,203 JBrowse link
G UFL1 UFM1 specific ligase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20228063) MGI
TreeGrafter		 PMID:20228063 GO_REF:0000118 NCBI chr13:77,357,239...77,387,385
Ensembl chr13:77,357,141...77,387,367 		JBrowse link
G WNT10B Wnt family member 10B acts_upstream_of_or_within ISO (PMID:19056892) MGI PMID:19056892 NCBI chr11:45,205,728...45,229,050
Ensembl chr11:45,205,566...45,210,893 		JBrowse link
G XPO1 exportin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:45,428,279...45,487,965
Ensembl chr14:45,432,619...45,488,723 		JBrowse link
G ZNF416 zinc finger protein 416 involved_in ISO PMID:33249983
(MGI:6789914|PMID:33249983)		 UniProt PMID:33249983 MGI:6789914 RGD:329955556 NCBI chr 6:49,943,136...49,950,935 JBrowse link
retrograde protein transport, ER to cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFG2A AFG2 AAA ATPase homolog A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:70,188,246...70,585,022 JBrowse link
G AUP1 AUP1 lipid droplet regulating VLDL assembly factor involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chr14:32,748,737...32,751,924
Ensembl chr14:32,748,909...32,751,776 		JBrowse link
G DERL1 derlin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15215855) MGI
Ensembl		 PMID:15215855 GO_REF:0000107 NCBI chr 8:117,587,373...117,617,233
Ensembl chr 8:117,586,496...117,617,194 		JBrowse link
G DERL2 derlin 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:16449189)
(PMID:21220515)		 UniProt
MGI		 PMID:16449189 PMID:21220515 NCBI chr16:4,882,296...4,897,799
Ensembl chr16:4,881,876...4,898,078 		JBrowse link
G ERLEC1 endoplasmic reticulum lectin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:53,150,627...53,188,821
Ensembl chr14:53,154,556...53,188,538 		JBrowse link
G FAF2 Fas associated factor family member 2 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chr23:78,421,558...78,515,671
Ensembl chr23:78,456,545...78,516,245 		JBrowse link
G HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chr 5:42,877,812...42,889,576
Ensembl chr 5:42,877,781...42,890,298 		JBrowse link
G HSP90B1 heat shock protein 90 beta family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:99,119,268...99,139,988
Ensembl chr11:99,119,224...99,139,722 		JBrowse link
G NPLOC4 NPL4 homolog, ubiquitin recognition factor involved_in ISO (PMID:25660456)
(MGI:5634892|PMID:12847084)		 ParkinsonsUK-UCL
ComplexPortal		 PMID:12847084 PMID:25660456 MGI:5634892 RGD:10047330 NCBI chr16:73,499,737...73,570,753
Ensembl chr16:73,502,123...73,570,710 		JBrowse link
G OS9 OS9 endoplasmic reticulum lectin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:53,606,916...53,635,152
Ensembl chr11:53,607,008...53,635,793 		JBrowse link
G SEC61B SEC61 translocon subunit beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:40,194,243...40,202,474
Ensembl chr12:40,194,301...40,202,441 		JBrowse link
G SEL1L SEL1L adaptor subunit of SYVN1 ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:58,812,553...58,877,173
Ensembl chr24:58,809,650...58,877,054 		JBrowse link
G SELENOS selenoprotein S involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr29:19,727,073...19,732,384
Ensembl chr29:19,726,451...19,732,375 		JBrowse link
G SYVN1 synoviolin 1 involved_in ISO (PMID:25660456) ParkinsonsUK-UCL PMID:25660456 NCBI chr 1:9,093,657...9,101,245
Ensembl chr 1:9,094,592...9,100,213 		JBrowse link
G TMEM129 transmembrane protein 129, E3 ubiquitin ligase involved_in ISO (PMID:24807418) ParkinsonsUK-UCL PMID:24807418 NCBI chr27:47,045,579...47,050,641
Ensembl chr27:47,045,427...47,051,327 		JBrowse link
G UFD1 ubiquitin recognition factor in ER associated degradation 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:6,275,834...6,305,940
Ensembl chr19:6,275,844...6,308,035 		JBrowse link
G VCP valosin containing protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:45,545,139...45,560,702
Ensembl chr12:45,545,507...45,563,380 		JBrowse link
ribosome-associated ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCC2 activating signal cointegrator 1 complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:12,673,642...12,725,268
Ensembl chr19:12,673,064...12,725,233 		JBrowse link
G ASCC3 activating signal cointegrator 1 complex subunit 3 involved_in ISO (PMID:32099016) UniProt PMID:32099016 NCBI chr13:73,044,869...73,411,481
Ensembl chr13:73,044,986...73,412,752 		JBrowse link
G LTN1 listerin E3 ubiquitin protein ligase 1 involved_in IEA UniProt
TreeGrafter
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:63,226,810...63,291,646
Ensembl chr 2:63,226,862...63,293,507 		JBrowse link
G NEMF nuclear export mediator factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:26,834,457...26,906,668
Ensembl chr24:26,835,305...26,906,564 		JBrowse link
G RNF10 ring finger protein 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:115,888,359...115,930,790
Ensembl chr11:115,893,457...115,930,848 		JBrowse link
G TCF25 transcription factor 25 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:75,205,506...75,235,290
Ensembl chr 5:75,205,504...75,235,777 		JBrowse link
G TRIP4 thyroid hormone receptor interactor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:19,065,934...19,133,489
Ensembl chr26:19,065,887...19,133,448 		JBrowse link
G ZNF598 zinc finger protein 598, E3 ubiquitin ligase involved_in ISO (PMID:32099016) UniProt PMID:32099016 NCBI chr 5:1,894,662...1,906,613
Ensembl chr 5:1,895,250...1,906,539 		JBrowse link
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BTRC beta-transducin repeat containing E3 ubiquitin protein ligase involved_in
acts_upstream_of_or_within		 ISO (MGI:5299399|PMID:21911472)
(PMID:32558204)
(PMID:22017875), (PMID:22017876), (PMID:22017877), (PMID:36608670)		 UniProt
MGI		 PMID:21911472 PMID:22017875 PMID:22017876 PMID:22017877 PMID:32558204 More... MGI:5299399 NCBI chr 9:94,333,046...94,581,327
Ensembl chr 9:94,376,055...94,574,678 		JBrowse link
G CCNF cyclin F involved_in ISO (PMID:20596027), (PMID:25557911) UniProt PMID:20596027 PMID:25557911 NCBI chr 5:2,302,249...2,336,188
Ensembl chr 5:2,302,341...2,335,270 		JBrowse link
G CUL1 cullin 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr21:117,271,477...117,373,983
Ensembl chr21:117,271,548...117,374,379 		JBrowse link
G CUL2 cullin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:34,294,885...34,381,140
Ensembl chr 9:34,294,362...34,364,122 		JBrowse link
G CUL5 cullin 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:99,432,034...99,538,296
Ensembl chr 1:99,432,706...99,534,888 		JBrowse link
G FBXL12 F-box and leucine rich repeat protein 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:8,905,168...8,911,659
Ensembl chr 6:8,904,921...8,911,795 		JBrowse link
G FBXL13 F-box and leucine rich repeat protein 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:71,872,508...72,140,161
Ensembl chr21:71,889,539...72,093,246 		JBrowse link
G FBXL14 F-box and leucine rich repeat protein 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:1,632,858...1,636,225 JBrowse link
G FBXL15 F-box and leucine rich repeat protein 15 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:95,450,709...95,454,830
Ensembl chr 9:95,452,809...95,459,661 		JBrowse link
G FBXL16 F-box and leucine rich repeat protein 16 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:612,449...625,530
Ensembl chr 5:610,490...625,493 		JBrowse link
G FBXL17 F-box and leucine rich repeat protein 17 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr23:11,307,953...11,839,483
Ensembl chr23:11,634,770...11,839,734 		JBrowse link
G FBXL18 F-box and leucine rich repeat protein 18 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr28:16,216,102...16,249,262
Ensembl chr28:16,216,176...16,248,409 		JBrowse link
G FBXL2 F-box and leucine rich repeat protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:77,769,424...77,895,994
Ensembl chr15:77,769,748...77,878,340 		JBrowse link
G FBXL3 F-box and leucine rich repeat protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:56,089,147...56,111,472
Ensembl chr 3:56,088,938...56,105,977 		JBrowse link
G FBXL4 F-box and leucine rich repeat protein 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:74,916,756...74,993,959
Ensembl chr13:74,916,869...74,997,462 		JBrowse link
G FBXL5 F-box and leucine rich repeat protein 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr27:34,575,889...34,682,308
Ensembl chr27:34,580,426...34,625,036 		JBrowse link
G FBXL6 F-box and leucine rich repeat protein 6 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 8:138,567,191...138,569,777 JBrowse link
G FBXL7 F-box and leucine rich repeat protein 7 involved_in ISO (MGI:5426128|PMID:22306998), (MGI:6368091|PMID:25778398)
(PMID:25778398)
(PMID:28218735)		 UniProt PMID:22306998 PMID:25778398 PMID:28218735 MGI:5426128 MGI:6368091 NCBI chr 4:15,191,309...15,621,160 JBrowse link
G FBXL7 F-box and leucine rich repeat protein 7 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr 4:15,609,576...15,621,182 JBrowse link
G FBXL8 F-box and leucine rich repeat protein 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:60,293,071...60,297,274
Ensembl chr 5:60,293,428...60,295,452 		JBrowse link
G FBXO17 F-box protein 17 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:33,555,689...33,590,776
Ensembl chr 6:33,555,240...33,590,723 		JBrowse link
G FBXO2 F-box protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:120,136,630...120,144,119
Ensembl chr20:120,136,702...120,144,258 		JBrowse link
G FBXO27 F-box protein 27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:33,611,205...33,630,008
Ensembl chr 6:33,621,386...33,629,223 		JBrowse link
G FBXO3 F-box protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:31,509,950...31,543,421
Ensembl chr 1:31,509,956...31,543,611 		JBrowse link
G FBXO31 F-box protein 31 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:72,696,868...72,752,480
Ensembl chr 5:72,701,136...72,752,989 		JBrowse link
G FBXO36 F-box protein 36 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:115,946,209...116,036,984
Ensembl chr10:115,998,262...116,039,612 		JBrowse link
G FBXO38 F-box protein 38 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr23:51,020,119...51,079,317
Ensembl chr23:51,020,127...51,079,308 		JBrowse link
G FBXO4 F-box protein 4 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:40,682,063...40,698,364
Ensembl chr 4:40,682,333...40,698,370 		JBrowse link
G FBXO44 F-box protein 44 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:120,128,422...120,137,081
Ensembl chr20:120,127,750...120,136,395 		JBrowse link
G FBXO48 F-box protein 48 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr14:38,636,899...38,640,875
Ensembl chr14:38,638,522...38,640,190 		JBrowse link
G FBXO6 F-box protein 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:120,116,125...120,127,025
Ensembl chr20:120,116,169...120,126,920 		JBrowse link
G FBXO9 F-box protein 9 involved_in IEA Ensembl
TreeGrafter
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr17:19,472,653...19,509,783
Ensembl chr17:19,469,964...19,506,033 		JBrowse link
G FBXW11 F-box and WD repeat domain containing 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:74,015,964...74,154,285
Ensembl chr23:74,015,964...74,154,062 		JBrowse link
G FBXW4 F-box and WD repeat domain containing 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:94,634,721...94,722,156
Ensembl chr 9:94,635,347...94,721,439 		JBrowse link
G FBXW5 F-box and WD repeat domain containing 5 involved_in ISO (PMID:21725316)
(MGI:5476881|PMID:23314863)		 UniProt PMID:21725316 PMID:23314863 MGI:5476881 NCBI chr12:1,246,416...1,250,930
Ensembl chr12:1,246,702...1,252,688 		JBrowse link
G FBXW7 F-box and WD repeat domain containing 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:98,894,261...99,105,955
Ensembl chr 7:98,892,504...99,106,084 		JBrowse link
G KIF14 kinesin family member 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:28,789,952...28,856,713
Ensembl chr25:28,789,614...28,856,570 		JBrowse link
G NCCRP1 NCCRP1, F-box associated domain containing involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:33,786,642...33,791,701
Ensembl chr 6:33,786,800...33,790,581 		JBrowse link
G RBX1 ring-box 1 involved_in ISO (PMID:15103331), (PMID:22017875), (PMID:22017876), (PMID:36608670)
(MGI:4821082|PMID:12140560)		 UniProt PMID:12140560 PMID:15103331 PMID:22017875 PMID:22017876 PMID:36608670 MGI:4821082 NCBI chr19:23,500,361...23,521,676
Ensembl chr19:23,500,356...23,522,723 		JBrowse link
G SKP1 S-phase kinase associated protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:36,961,572...36,978,849
Ensembl chr23:36,962,328...36,978,757 		JBrowse link
G SKP2 S-phase kinase associated protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:35,009,114...35,040,518
Ensembl chr 4:35,009,076...35,042,632 		JBrowse link
G WWTR1 WW domain containing transcription regulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17636028) Ensembl
MGI		 PMID:17636028 GO_REF:0000107 NCBI chr15:41,051,827...41,193,266
Ensembl chr15:41,052,614...41,193,268 		JBrowse link
ubiquitin-dependent protein catabolic process via the C-end degron rule pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUL2 cullin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:34,294,885...34,381,140
Ensembl chr 9:34,294,362...34,364,122 		JBrowse link
G CUL4A cullin 4A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:91,211,238...91,267,236
Ensembl chr 3:91,212,193...91,268,838 		JBrowse link
G DCAF12 DDB1 and CUL4 associated factor 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:46,468,750...46,504,544
Ensembl chr12:46,468,714...46,504,557 		JBrowse link
G FEM1A fem-1 homolog A involved_in ISO (PMID:29779948), (PMID:33398168), (PMID:33398170) UniProt PMID:29779948 PMID:33398168 PMID:33398170
G FEM1B fem-1 homolog B involved_in ISO (PMID:29779948), (PMID:33398168), (PMID:33398170)
(MGI:6790336|PMID:34562363)		 UniProt PMID:29779948 PMID:33398168 PMID:33398170 PMID:34562363 MGI:6790336 NCBI chr26:15,183,965...15,201,394 JBrowse link
G FEM1C fem-1 homolog C involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:18,773,359...18,797,316
Ensembl chr23:18,771,956...18,797,128 		JBrowse link
G KLHDC1 kelch domain containing 1 involved_in ISO (PMID:32200094) UniProt PMID:32200094 NCBI chr24:26,742,309...26,805,928 JBrowse link
G KLHDC1 kelch domain containing 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr24:26,742,644...26,779,680 JBrowse link
G KLHDC10 kelch domain containing 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:98,702,411...98,773,299
Ensembl chr21:98,702,451...98,768,343 		JBrowse link
G KLHDC2 kelch domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:26,816,634...26,834,057
Ensembl chr24:26,816,842...26,833,870 		JBrowse link
G KLHDC3 kelch domain containing 3 involved_in ISO (PMID:29779948) UniProt PMID:29779948 NCBI chr17:29,138,568...29,145,794
Ensembl chr17:29,138,459...29,145,787 		JBrowse link
G LOC103233730 protein fem-1 homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:4,503,012...4,506,873
Ensembl chr 6:4,503,146...4,505,155 		JBrowse link
G RBX1 ring-box 1 involved_in ISO (PMID:29779948), (PMID:34065512) UniProt PMID:29779948 PMID:34065512 NCBI chr19:23,500,361...23,521,676
Ensembl chr19:23,500,356...23,522,723 		JBrowse link
G TRPC4AP transient receptor potential cation channel subfamily C member 4 associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:39,304,240...39,391,447
Ensembl chr 2:39,305,203...39,391,418 		JBrowse link
ubiquitin-dependent protein catabolic process via the N-end rule pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UBR1 ubiquitin protein ligase E3 component n-recognin 1 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr26:39,851,630...40,026,817 JBrowse link
G UBR2 ubiquitin protein ligase E3 component n-recognin 2 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr17:29,458,388...29,590,706
Ensembl chr17:29,458,374...29,590,687 		JBrowse link
G UBR3 ubiquitin protein ligase E3 component n-recognin 3 involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr10:55,354,367...55,616,810
Ensembl chr10:55,354,365...55,614,520 		JBrowse link
G UBR4 ubiquitin protein ligase E3 component n-recognin 4 involved_in ISO (PMID:38030679) UniProt PMID:38030679 NCBI chr20:113,354,561...113,493,936
Ensembl chr20:113,355,676...113,494,386 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16925
    metabolic process 10516
      primary metabolic process 9206
        protein metabolic process 4065
          protein catabolic process 1002
            proteasomal protein catabolic process 527
              EGAD pathway 0
              ERAD pathway + 88
              negative regulation of proteasomal protein catabolic process + 60
              positive regulation of proteasomal protein catabolic process + 125
              proteasomal ubiquitin-independent protein catabolic process 4
              proteasome-mediated ubiquitin-dependent protein catabolic process + 394
              regulation of proteasomal protein catabolic process + 216
Path 2
Term Annotations click to browse term
  biological_process 16925
    metabolic process 10516
      organic substance metabolic process 10067
        organonitrogen compound metabolic process 5108
          organonitrogen compound catabolic process 1398
            protein catabolic process 1002
              proteolysis involved in protein catabolic process 753
                proteasomal protein catabolic process 527
                  EGAD pathway 0
                  ERAD pathway + 88
                  negative regulation of proteasomal protein catabolic process + 60
                  positive regulation of proteasomal protein catabolic process + 125
                  proteasomal ubiquitin-independent protein catabolic process 4
                  proteasome-mediated ubiquitin-dependent protein catabolic process + 394
                  regulation of proteasomal protein catabolic process + 216
paths to the root