RMND5B (required for meiotic nuclear division 5 homolog B)

Gene: RMND5B (required for meiotic nuclear division 5 homolog B) Chlorocebus sabaeus

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Symbol:

RMND5B

Name:

required for meiotic nuclear division 5 homolog B

RGD ID:

18558989

Description:

ENCODES a protein that exhibits metal ion binding (inferred); transferase activity (inferred); ubiquitin protein ligase activity (inferred); INVOLVED IN proteasome-mediated ubiquitin-dependent protein catabolic process (inferred); ASSOCIATED WITH autosomal recessive dyskeratosis congenita 1 (ortholog); autosomal recessive dyskeratosis congenita 2 (ortholog); dyskeratosis congenita (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); GID complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

E3 ubiquitin-protein transferase RMND5B; protein RMD5 homolog B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	79,823,479 - 79,846,059 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	79,823,565 - 79,841,104 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	11,123,647 - 11,142,237 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive dyskeratosis congenita 1 (ISO)

autosomal recessive dyskeratosis congenita 2 (ISO)

dyskeratosis congenita (ISO)

Ehlers-Danlos syndrome dermatosparaxis type (ISO)

Ehlers-Danlos syndrome spondylodysplastic type 2 (ISO)

Experimental Liver Cirrhosis (ISO)

Sotos syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

proteasome-mediated ubiquitin-dependent protein catabolic process (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

GID complex (IEA)

nucleus (IEA)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

transferase activity (IEA)

ubiquitin protein ligase activity (IEA)

ubiquitin-protein transferase activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

RMND5B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	79,823,479 - 79,846,059 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	79,823,565 - 79,841,104 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	11,123,647 - 11,142,237 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

RMND5B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	178,131,014 - 178,150,568 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	178,130,996 - 178,150,568 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	177,558,015 - 177,577,569 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	177,490,634 - 177,508,085 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	173,184,980 - 173,202,461 (+)	NCBI		Celera
Cytogenetic Map	5	q35.3	NCBI
HuRef	5	172,284,249 - 172,301,448 (+)	NCBI		HuRef
CHM1_1	5	176,989,388 - 177,006,857 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	178,681,247 - 178,700,827 (+)	NCBI		T2T-CHM13v2.0

Rmnd5b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	51,514,500 - 51,526,723 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	51,514,498 - 51,526,723 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	51,623,673 - 51,635,896 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	51,623,671 - 51,635,896 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	51,437,175 - 51,449,398 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	51,467,096 - 51,479,319 (-)	NCBI		MGSCv36	mm8
Celera	11	56,195,016 - 56,207,220 (-)	NCBI		Celera
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	31.15	NCBI

Rmnd5b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	36,382,212 - 36,394,801 (-)	NCBI		GRCr8
mRatBN7.2	10	35,881,250 - 35,892,322 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	35,881,268 - 35,892,265 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	40,575,584 - 40,586,527 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	40,065,876 - 40,076,821 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	35,569,285 - 35,580,228 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	34,979,902 - 34,990,985 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	34,979,923 - 34,990,943 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	10	37,073,345 - 37,084,637 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	36,845,869 - 36,856,894 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	37,141,491 - 37,152,433 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	35,237,988 - 35,248,930 (-)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

Rmnd5b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	2,095,150 - 2,107,682 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	2,095,150 - 2,107,394 (-)	NCBI	ChiLan1.0	ChiLan1.0

RMND5B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	173,072,235 - 173,089,944 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	171,211,653 - 171,229,504 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	173,290,007 - 173,307,663 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	180,548,346 - 180,565,094 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	180,548,381 - 180,565,094 (+)	Ensembl	panpan1.1		panPan2

RMND5B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	3,393,852 - 3,409,484 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	3,393,853 - 3,407,509 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	3,536,826 - 3,552,462 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	3,369,565 - 3,385,207 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	3,366,108 - 3,385,265 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	3,338,093 - 3,353,733 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	3,417,690 - 3,433,333 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	3,659,857 - 3,675,496 (-)	NCBI		UU_Cfam_GSD_1.0

Rmnd5b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	113,522,686 - 113,537,897 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936647	522,761 - 540,923 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936647	526,500 - 540,586 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RMND5B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	80,225,496 - 80,246,945 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	80,226,047 - 80,247,358 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	82,040,229 - 82,045,747 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Rmnd5b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	41,358,910 - 41,375,513 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	41,357,840 - 41,371,203 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36	13	60
Low		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008015472	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008015473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008015475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008015476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008015477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008015478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008015479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008015480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037992702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037992703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037992704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037992705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037992706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037992707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037992708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037992709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037992710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037992711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000006760 ⟹ ENSCSAP00000004955

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	23	79,823,565 - 79,841,104 (+)	Ensembl

RefSeq Acc Id:

XM_008015472 ⟹ XP_008013663

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	23	79,823,479 - 79,841,644 (+)	NCBI
Vero_WHO_p1.0	NW_023666075	11,123,647 - 11,142,222 (+)	NCBI

Sequence:

show sequence

GACGCCTCCTCTGCCGGGTGGGGAACCCGCCCGCCGGCGAGGAGCGGTCGCGGCTAGCGGCTTC
CGTCGACTGGGAGGCCCGCGGCCCGGCCGGTGGGACTCGGAACCTGGAGGCGACTAGGCGCGAC
CCCCCAGAGGACTACAGGCGCGGCTTTTCAGGCCATCGCCCTGTTCACGCGGGCGACTCCACTC
GGCACGCGCGGCGGGGAGGCTCGGCGGCCGGACGCAAAGCTGCGGGCTCGTGGGACGGCCACCC
CTCCACGAAACCGCCAGTGGGCGGGCCCGGGCCGCCGATCGACCGCCGTGGCTTCCGGTTCCGA
TGACAGTGGCGCCGGAAGCCGGGGCCGGGGCTGCGGGGCGAGTTATCGGCCCCGGGCCGGGAGC
TGGAGTCCCAGACTCAGGTCCCGGCCCAGCCCCCGAAGACCCGCCTCAGCCGGGGGAGTAGCTC
GGACCCAAACGTCCCATCCTCGTGCGACCGTGCTGGGTCAGAGGTGAGCAGGGTCTCACTCTGT
TGCTCAGGCTGGAGTGCAGTGGCATAATCATGACTCACTGCAGCCTTGACGTCCCGGGCTCAAG
CAATCCTCCCTCTCACCTCAGCCTTCTGAGTAGCTGGGACCACAGGCATGTGCCACCATGCCCA
GGCTGAGGCCACCATGGAGCAGTGTGCGTGCGTGGAGAGAGAGCTGGACAAGGTCCTGCAGAAG
TTCCTGACCTACGGGCAGCACTGCGAGCAGAGCCTGGAGGAGCTGCTGCACTACGTGGGCCAGC
TGCGGGCTGAGCTGGCCAGTGCAGCCCTCCAGGGGACCCCTCTTTCAGCCACCCTCTCTCTGGT
GATGTCACAATGCTGCCGGAAGATCAAAGATACGGTGCAGAAACTGGCTTCGGACCATAAGGAC
ATTCACAGCAGTGTATCCCGAGTGGGCAAAGCCATTGACAGGAACTTCGACTCTGAGATCTGTG
GTGTTGTGTCAGATGCGGTGTGGGACGCGCGGGAACAGCAGCAGCAGATCCTGCAGATGGCCAT
CGTGGAACACCTGTACCAGCAGGGCATGCTCAGTGTGGCCGAGGAGCTGTGCCAGGAATCAACC
CTGAACGTGGACTTGGATTTCAAGCAGCCTTTCCTAGAGTTGAATCGAATCCTGGAAGCCCTGC
ACGAACAAGACCTGGGTCCTGCGCTGGAATGGGCCGTCTCCCACAGGCATCGCCTGCTGGAACT
CAACAGCTCCCTGGAGTTCAAGCTGCACCGACTGTACTTCATCCGCCTCCTGGCAGGAGGCCCC
GAGAAGCAGCTGGAGGCCCTCAGCTATGCTCGGCACTTCCAGCCCTTTGCCCAGCTGCACCAGC
GGGAGATCCAGGTGATGATGGGCAGCCTGGTGTACCTGCGGCTGGGCTTGGAGAAGTCACCCTA
CTGCCACCTGCTGGACAACAGCCACTGGGCAGAGATCTGTGAGACCTTTACCCGGGACGCCTGT
TCCCTGCTGGGGCTTTCTGTGGAGTCCCCCCTTAGCGTCAGCTTTGCCTCTGGCTGTGTGGCGC
TGCCCGTGTTGATGAACATCAAGGCTGTGATTGAGCAAAGGCAGTGCACTGGGGTCTGGAGTCA
CAAGGACGAGTTACCGATTGAGATTGAACTAGGCATGAAGTGCTGGTACCACTCCGTGTTCGCT
TGCCCCATCCTCCGCCAGCAGACGTCAGATTCCAACCCTCCCATCAAGCTCATCTGTGGCCATG
TTATCTCCCGAGATGCACTCAATAAGCTCATTAATGGAGGAAAGCTGAAGTGTCCCTACTGTCC
CATGGAGCAGAACCCGGCAGATGGGAAACGCATCATATTCTGATTCCTACCTGGAAGGAATTTT
GTTGAAAGGGGTTTTCACCTGTGAGCCTTGATCTGTCTCAGTAGGGTGGTGAGCTTCAGTGGAC
TGTGGTTGGTTTCAGAGCACCTGGCTGAGGAGTTCCGCTGAGGGGAGGGCTGGAGCAGCCCTTT
GGCAGAGACTGAGGAGGGAGATGGACCAGCCCACACCTGGCAGCCAGCTCTATGGCATAAGGAA
AGGGAGATGCTGGCCTCTGTGCTCCTGCTGTCTCTTCCTGTTTTTATTTGCCCTTGACTTAGTA
GCAGCCGACAGAGTGGCAAGGCACTTGGTCTTCAGCAGTAGACATCCTTCTACCCCTGCCCTCA
GCCAAGTCTCTTGCTGCCATGCCAATGCTCTGTCCACCCCTTGCCCCTCGGCCCAAGGGTGTCC
AGTGGTGGCCCACCTCTTCCTCCCACTGTACAGCCTCAACAGTATGTACCATCTCCCACTGTAA
ATAGTCCCAGTTAGAATGGAATGCCGTTGTTTTATAACTTTGAACAAATATATTCGCTGCCCTT
CTCATTT

hide sequence

RefSeq Acc Id:

XM_008015476 ⟹ XP_008013667

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	23	79,823,483 - 79,841,644 (+)	NCBI
Vero_WHO_p1.0	NW_023666075	11,123,647 - 11,142,222 (+)	NCBI

Sequence:

show sequence

CCTCCTCTGCCGGGTGGGGAACCCGCCCGCCGGCGAGGAGCGGTCGCGGCTAGCGGCTTCCGTC
GACTGGGAGGCCCGCGGCCCGGCCGGTGGGACTCGGAACCTGGAGGCGACTAGGCGCGACCCCC
CAGAGGACTACAGGCGCGGCTTTTCAGGCCATCGCCCTGTTCACGCGGGCGACTCCACTCGGCA
CGCGCGGCGGGGAGGCTCGGCGGCCGGACGCAAAGCTGCGGGCTCGTGGGACGGCCACCCCTCC
ACGAAACCGCCAGTGGGCGGGCCCGGGCCGCCGATCGACCGCCGTGGCTTCCGGTTCCGATGAC
AGTGGCGCCGGAAGCCGGGGCCGGGGCTGCGGGGCGAGTTATCGGCCCCGGGCCGGGAGCTGGA
GTCCCAGACTCAGGTCCCGGCCCAGCCCCCGAAGACCCGCCTCAGCCGGGGGAGTAGCTCGGAC
CCAAACGTCCCATCCTCGTGCGACCGTGCTGGGTCAGAGGTGAGCAGGCTGAGGCCACCATGGA
GCAGTGTGCGTGCGTGGAGAGAGAGCTGGACAAGGTCCTGCAGAAGTTCCTGACCTACGGGCAG
CACTGCGAGCAGAGCCTGGAGGAGCTGCTGCACTACGTGGGCCAGCTGCGGGCTGAGCTGGCCA
GTGCAGCCCTCCAGGGGACCCCTCTTTCAGCCACCCTCTCTCTGGTGATGTCACAATGCTGCCG
GAAGATCAAAGATACGGTGCAGAAACTGGCTTCGGACCATAAGGACATTCACAGCAGTGTATCC
CGAGTGGGCAAAGCCATTGACAGGAACTTCGACTCTGAGATCTGTGGTGTTGTGTCAGATGCGG
TGTGGGACGCGCGGGAACAGCAGCAGCAGATCCTGCAGATGGCCATCGTGGAACACCTGTACCA
GCAGGGCATGCTCAGTGTGGCCGAGGAGCTGTGCCAGGAATCAACCCTGAACGTGGACTTGGAT
TTCAAGCAGCCTTTCCTAGAGTTGAATCGAATCCTGGAAGCCCTGCACGAACAAGACCTGGGTC
CTGCGCTGGAATGGGCCGTCTCCCACAGGCATCGCCTGCTGGAACTCAACAGCTCCCTGGAGTT
CAAGCTGCACCGACTGTACTTCATCCGCCTCCTGGCAGGAGGCCCCGAGAAGCAGCTGGAGGCC
CTCAGCTATGCTCGGCACTTCCAGCCCTTTGCCCAGCTGCACCAGCGGGAGATCCAGGTGATGA
TGGGCAGCCTGGTGTACCTGCGGCTGGGCTTGGAGAAGTCACCCTACTGCCACCTGCTGGACAA
CAGCCACTGGGCAGAGATCTGTGAGACCTTTACCCGGGACGCCTGTTCCCTGCTGGGGCTTTCT
GTGGAGTCCCCCCTTAGCGTCAGCTTTGCCTCTGGCTGTGTGGCGCTGCCCGTGTTGATGAACA
TCAAGGCTGTGATTGAGCAAAGGCAGTGCACTGGGGTCTGGAGTCACAAGGACGAGTTACCGAT
TGAGATTGAACTAGGCATGAAGTGCTGGTACCACTCCGTGTTCGCTTGCCCCATCCTCCGCCAG
CAGACGTCAGATTCCAACCCTCCCATCAAGCTCATCTGTGGCCATGTTATCTCCCGAGATGCAC
TCAATAAGCTCATTAATGGAGGAAAGCTGAAGTGTCCCTACTGTCCCATGGAGCAGAACCCGGC
AGATGGGAAACGCATCATATTCTGATTCCTACCTGGAAGGAATTTTGTTGAAAGGGGTTTTCAC
CTGTGAGCCTTGATCTGTCTCAGTAGGGTGGTGAGCTTCAGTGGACTGTGGTTGGTTTCAGAGC
ACCTGGCTGAGGAGTTCCGCTGAGGGGAGGGCTGGAGCAGCCCTTTGGCAGAGACTGAGGAGGG
AGATGGACCAGCCCACACCTGGCAGCCAGCTCTATGGCATAAGGAAAGGGAGATGCTGGCCTCT
GTGCTCCTGCTGTCTCTTCCTGTTTTTATTTGCCCTTGACTTAGTAGCAGCCGACAGAGTGGCA
AGGCACTTGGTCTTCAGCAGTAGACATCCTTCTACCCCTGCCCTCAGCCAAGTCTCTTGCTGCC
ATGCCAATGCTCTGTCCACCCCTTGCCCCTCGGCCCAAGGGTGTCCAGTGGTGGCCCACCTCTT
CCTCCCACTGTACAGCCTCAACAGTATGTACCATCTCCCACTGTAAATAGTCCCAGTTAGAATG
GAATGCCGTTGTTTTATAACTTTGAACAAATATATTCGCTGCCCTTCTCATTT

hide sequence

RefSeq Acc Id:

XM_008015477 ⟹ XP_008013668

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	23	79,823,483 - 79,841,644 (+)	NCBI
Vero_WHO_p1.0	NW_023666075	11,123,647 - 11,142,222 (+)	NCBI

Sequence:

show sequence

CCTCCTCTGCCGGGTGGGGAACCCGCCCGCCGGCGAGGAGCGGTCGCGGCTAGCGGCTTCCGTC
GACTGGGAGGCCCGCGGCCCGGCCGGTGGGACTCGGAACCTGGAGGCGACTAGGCGCGACCCCC
CAGAGGACTACAGGCGCGGCTTTTCAGGCCATCGCCCTGTTCACGCGGGCGACTCCACTCGGCA
CGCGCGGCGGGGAGGCTCGGCGGCCGGACGCAAAGCTGCGGGCTCGTGGGACGGCCACCCCTCC
ACGAAACCGCCAGTGGGCGGGCCCGGGCCGCCGATCGACCGCCGTGGCTTCCGGTTCCGATGAC
AGTGGCGCCGGAAGCCGGGGCCGGGGCTGCGGGGCGAGGCTGAGGCCACCATGGAGCAGTGTGC
GTGCGTGGAGAGAGAGCTGGACAAGGTCCTGCAGAAGTTCCTGACCTACGGGCAGCACTGCGAG
CAGAGCCTGGAGGAGCTGCTGCACTACGTGGGCCAGCTGCGGGCTGAGCTGGCCAGTGCAGCCC
TCCAGGGGACCCCTCTTTCAGCCACCCTCTCTCTGGTGATGTCACAATGCTGCCGGAAGATCAA
AGATACGGTGCAGAAACTGGCTTCGGACCATAAGGACATTCACAGCAGTGTATCCCGAGTGGGC
AAAGCCATTGACAGGAACTTCGACTCTGAGATCTGTGGTGTTGTGTCAGATGCGGTGTGGGACG
CGCGGGAACAGCAGCAGCAGATCCTGCAGATGGCCATCGTGGAACACCTGTACCAGCAGGGCAT
GCTCAGTGTGGCCGAGGAGCTGTGCCAGGAATCAACCCTGAACGTGGACTTGGATTTCAAGCAG
CCTTTCCTAGAGTTGAATCGAATCCTGGAAGCCCTGCACGAACAAGACCTGGGTCCTGCGCTGG
AATGGGCCGTCTCCCACAGGCATCGCCTGCTGGAACTCAACAGCTCCCTGGAGTTCAAGCTGCA
CCGACTGTACTTCATCCGCCTCCTGGCAGGAGGCCCCGAGAAGCAGCTGGAGGCCCTCAGCTAT
GCTCGGCACTTCCAGCCCTTTGCCCAGCTGCACCAGCGGGAGATCCAGGTGATGATGGGCAGCC
TGGTGTACCTGCGGCTGGGCTTGGAGAAGTCACCCTACTGCCACCTGCTGGACAACAGCCACTG
GGCAGAGATCTGTGAGACCTTTACCCGGGACGCCTGTTCCCTGCTGGGGCTTTCTGTGGAGTCC
CCCCTTAGCGTCAGCTTTGCCTCTGGCTGTGTGGCGCTGCCCGTGTTGATGAACATCAAGGCTG
TGATTGAGCAAAGGCAGTGCACTGGGGTCTGGAGTCACAAGGACGAGTTACCGATTGAGATTGA
ACTAGGCATGAAGTGCTGGTACCACTCCGTGTTCGCTTGCCCCATCCTCCGCCAGCAGACGTCA
GATTCCAACCCTCCCATCAAGCTCATCTGTGGCCATGTTATCTCCCGAGATGCACTCAATAAGC
TCATTAATGGAGGAAAGCTGAAGTGTCCCTACTGTCCCATGGAGCAGAACCCGGCAGATGGGAA
ACGCATCATATTCTGATTCCTACCTGGAAGGAATTTTGTTGAAAGGGGTTTTCACCTGTGAGCC
TTGATCTGTCTCAGTAGGGTGGTGAGCTTCAGTGGACTGTGGTTGGTTTCAGAGCACCTGGCTG
AGGAGTTCCGCTGAGGGGAGGGCTGGAGCAGCCCTTTGGCAGAGACTGAGGAGGGAGATGGACC
AGCCCACACCTGGCAGCCAGCTCTATGGCATAAGGAAAGGGAGATGCTGGCCTCTGTGCTCCTG
CTGTCTCTTCCTGTTTTTATTTGCCCTTGACTTAGTAGCAGCCGACAGAGTGGCAAGGCACTTG
GTCTTCAGCAGTAGACATCCTTCTACCCCTGCCCTCAGCCAAGTCTCTTGCTGCCATGCCAATG
CTCTGTCCACCCCTTGCCCCTCGGCCCAAGGGTGTCCAGTGGTGGCCCACCTCTTCCTCCCACT
GTACAGCCTCAACAGTATGTACCATCTCCCACTGTAAATAGTCCCAGTTAGAATGGAATGCCGT
TGTTTTATAACTTTGAACAAATATATTCGCTGCCCTTCTCATTT

hide sequence

RefSeq Acc Id:

XM_008015479 ⟹ XP_008013670

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	23	79,831,113 - 79,841,644 (+)	NCBI
Vero_WHO_p1.0	NW_023666075	11,123,647 - 11,142,222 (+)	NCBI

Sequence:

show sequence

TGCAAGTGCCCTGCGACAGCCTCCCTGAGGACATGGGAGACCCGAAGCTACTGAGTGACAGGGT
TCCGGAAGGACGATGATGAGGATGTTGGTACCAGCATCTCTAGGCCTCCTTGAAACCGGCCCTC
CAGGGGACCCCTCTTTCAGCCACCCTCTCTCTGGTGATGTCACAATGCTGCCGGAAGATCAAAG
ATACGGTGCAGAAACTGGCTTCGGACCATAAGGACATTCACAGCAGTGTATCCCGAGTGGGCAA
AGCCATTGACAGGAACTTCGACTCTGAGATCTGTGGTGTTGTGTCAGATGCGGTGTGGGACGCG
CGGGAACAGCAGCAGCAGATCCTGCAGATGGCCATCGTGGAACACCTGTACCAGCAGGGCATGC
TCAGTGTGGCCGAGGAGCTGTGCCAGGAATCAACCCTGAACGTGGACTTGGATTTCAAGCAGCC
TTTCCTAGAGTTGAATCGAATCCTGGAAGCCCTGCACGAACAAGACCTGGGTCCTGCGCTGGAA
TGGGCCGTCTCCCACAGGCATCGCCTGCTGGAACTCAACAGCTCCCTGGAGTTCAAGCTGCACC
GACTGTACTTCATCCGCCTCCTGGCAGGAGGCCCCGAGAAGCAGCTGGAGGCCCTCAGCTATGC
TCGGCACTTCCAGCCCTTTGCCCAGCTGCACCAGCGGGAGATCCAGGTGATGATGGGCAGCCTG
GTGTACCTGCGGCTGGGCTTGGAGAAGTCACCCTACTGCCACCTGCTGGACAACAGCCACTGGG
CAGAGATCTGTGAGACCTTTACCCGGGACGCCTGTTCCCTGCTGGGGCTTTCTGTGGAGTCCCC
CCTTAGCGTCAGCTTTGCCTCTGGCTGTGTGGCGCTGCCCGTGTTGATGAACATCAAGGCTGTG
ATTGAGCAAAGGCAGTGCACTGGGGTCTGGAGTCACAAGGACGAGTTACCGATTGAGATTGAAC
TAGGCATGAAGTGCTGGTACCACTCCGTGTTCGCTTGCCCCATCCTCCGCCAGCAGACGTCAGA
TTCCAACCCTCCCATCAAGCTCATCTGTGGCCATGTTATCTCCCGAGATGCACTCAATAAGCTC
ATTAATGGAGGAAAGCTGAAGTGTCCCTACTGTCCCATGGAGCAGAACCCGGCAGATGGGAAAC
GCATCATATTCTGATTCCTACCTGGAAGGAATTTTGTTGAAAGGGGTTTTCACCTGTGAGCCTT
GATCTGTCTCAGTAGGGTGGTGAGCTTCAGTGGACTGTGGTTGGTTTCAGAGCACCTGGCTGAG
GAGTTCCGCTGAGGGGAGGGCTGGAGCAGCCCTTTGGCAGAGACTGAGGAGGGAGATGGACCAG
CCCACACCTGGCAGCCAGCTCTATGGCATAAGGAAAGGGAGATGCTGGCCTCTGTGCTCCTGCT
GTCTCTTCCTGTTTTTATTTGCCCTTGACTTAGTAGCAGCCGACAGAGTGGCAAGGCACTTGGT
CTTCAGCAGTAGACATCCTTCTACCCCTGCCCTCAGCCAAGTCTCTTGCTGCCATGCCAATGCT
CTGTCCACCCCTTGCCCCTCGGCCCAAGGGTGTCCAGTGGTGGCCCACCTCTTCCTCCCACTGT
ACAGCCTCAACAGTATGTACCATCTCCCACTGTAAATAGTCCCAGTTAGAATGGAATGCCGTTG
TTTTATAACTTTGAACAAATATATTCGCTGCCCTTCTCATTT

hide sequence

RefSeq Acc Id:

XM_008015480 ⟹ XP_008013671

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	23	79,827,644 - 79,841,644 (+)	NCBI
Vero_WHO_p1.0	NW_023666075	11,127,919 - 11,142,237 (+)	NCBI

Sequence:

show sequence

ATGACTCACTGCAGCCTTGACGTCCCGGGCTCAAGCAATCCTCCCTCTCACCTCAGCCTTCTGA
GTAGCTGGGACCACAGGCATGTGCCACCATGCCCAGCCCTCCAGGGGACCCCTCTTTCAGCCAC
CCTCTCTCTGGTGATGTCACAATGCTGCCGGAAGATCAAAGATACGGTGCAGAAACTGGCTTCG
GACCATAAGGACATTCACAGCAGTGTATCCCGAGTGGGCAAAGCCATTGACAGGAACTTCGACT
CTGAGATCTGTGGTGTTGTGTCAGATGCGGTGTGGGACGCGCGGGAACAGCAGCAGCAGATCCT
GCAGATGGCCATCGTGGAACACCTGTACCAGCAGGGCATGCTCAGTGTGGCCGAGGAGCTGTGC
CAGGAATCAACCCTGAACGTGGACTTGGATTTCAAGCAGCCTTTCCTAGAGTTGAATCGAATCC
TGGAAGCCCTGCACGAACAAGACCTGGGTCCTGCGCTGGAATGGGCCGTCTCCCACAGGCATCG
CCTGCTGGAACTCAACAGCTCCCTGGAGTTCAAGCTGCACCGACTGTACTTCATCCGCCTCCTG
GCAGGAGGCCCCGAGAAGCAGCTGGAGGCCCTCAGCTATGCTCGGCACTTCCAGCCCTTTGCCC
AGCTGCACCAGCGGGAGATCCAGGTGATGATGGGCAGCCTGGTGTACCTGCGGCTGGGCTTGGA
GAAGTCACCCTACTGCCACCTGCTGGACAACAGCCACTGGGCAGAGATCTGTGAGACCTTTACC
CGGGACGCCTGTTCCCTGCTGGGGCTTTCTGTGGAGTCCCCCCTTAGCGTCAGCTTTGCCTCTG
GCTGTGTGGCGCTGCCCGTGTTGATGAACATCAAGGCTGTGATTGAGCAAAGGCAGTGCACTGG
GGTCTGGAGTCACAAGGACGAGTTACCGATTGAGATTGAACTAGGCATGAAGTGCTGGTACCAC
TCCGTGTTCGCTTGCCCCATCCTCCGCCAGCAGACGTCAGATTCCAACCCTCCCATCAAGCTCA
TCTGTGGCCATGTTATCTCCCGAGATGCACTCAATAAGCTCATTAATGGAGGAAAGCTGAAGTG
TCCCTACTGTCCCATGGAGCAGAACCCGGCAGATGGGAAACGCATCATATTCTGATTCCTACCT
GGAAGGAATTTTGTTGAAAGGGGTTTTCACCTGTGAGCCTTGATCTGTCTCAGTAGGGTGGTGA
GCTTCAGTGGACTGTGGTTGGTTTCAGAGCACCTGGCTGAGGAGTTCCGCTGAGGGGAGGGCTG
GAGCAGCCCTTTGGCAGAGACTGAGGAGGGAGATGGACCAGCCCACACCTGGCAGCCAGCTCTA
TGGCATAAGGAAAGGGAGATGCTGGCCTCTGTGCTCCTGCTGTCTCTTCCTGTTTTTATTTGCC
CTTGACTTAGTAGCAGCCGACAGAGTGGCAAGGCACTTGGTCTTCAGCAGTAGACATCCTTCTA
CCCCTGCCCTCAGCCAAGTCTCTTGCTGCCATGCCAATGCTCTGTCCACCCCTTGCCCCTCGGC
CCAAGGGTGTCCAGTGGTGGCCCACCTCTTCCTCCCACTGTACAGCCTCAACAGTATGTACCAT
CTCCCACTGTAAATAGTCCCAGTTAGAATGGAATGCCGTTGTTTTATAACTTTGAACAAATATA
TTCGCTGCCCTTCTCATTT

hide sequence

RefSeq Acc Id:

XM_037992702 ⟹ XP_037848630

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666075	11,123,647 - 11,142,237 (+)	NCBI

RefSeq Acc Id:

XM_037992703 ⟹ XP_037848631

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666075	11,124,132 - 11,142,214 (+)	NCBI

RefSeq Acc Id:

XM_037992704 ⟹ XP_037848632

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666075	11,123,647 - 11,142,214 (+)	NCBI

RefSeq Acc Id:

XM_037992705 ⟹ XP_037848633

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666075	11,123,647 - 11,142,214 (+)	NCBI

RefSeq Acc Id:

XM_037992706 ⟹ XP_037848634

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666075	11,123,647 - 11,142,214 (+)	NCBI

RefSeq Acc Id:

XM_037992707 ⟹ XP_037848635

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666075	11,126,253 - 11,142,214 (+)	NCBI

RefSeq Acc Id:

XM_037992708 ⟹ XP_037848636

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666075	11,123,647 - 11,142,222 (+)	NCBI

RefSeq Acc Id:

XM_037992709 ⟹ XP_037848637

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666075	11,123,647 - 11,142,222 (+)	NCBI

RefSeq Acc Id:

XM_037992710 ⟹ XP_037848638

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666075	11,123,647 - 11,142,222 (+)	NCBI

RefSeq Acc Id:

XM_037992711 ⟹ XP_037848639

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666075	11,124,275 - 11,142,214 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_008013663	(Get FASTA)	NCBI Sequence Viewer
	XP_008013667	(Get FASTA)	NCBI Sequence Viewer
	XP_008013668	(Get FASTA)	NCBI Sequence Viewer
	XP_008013670	(Get FASTA)	NCBI Sequence Viewer
	XP_008013671	(Get FASTA)	NCBI Sequence Viewer
	XP_037848630	(Get FASTA)	NCBI Sequence Viewer
	XP_037848631	(Get FASTA)	NCBI Sequence Viewer
	XP_037848632	(Get FASTA)	NCBI Sequence Viewer
	XP_037848633	(Get FASTA)	NCBI Sequence Viewer
	XP_037848634	(Get FASTA)	NCBI Sequence Viewer
	XP_037848635	(Get FASTA)	NCBI Sequence Viewer
	XP_037848636	(Get FASTA)	NCBI Sequence Viewer
	XP_037848637	(Get FASTA)	NCBI Sequence Viewer
	XP_037848638	(Get FASTA)	NCBI Sequence Viewer
	XP_037848639	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000004955.1

RefSeq Acc Id:	XP_008013663 ⟸ XM_008015472
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_008013667 ⟸ XM_008015476
- Peptide Label:	isoform X4
- UniProtKB:	A0A0D9R8L6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_008013668 ⟸ XM_008015477
- Peptide Label:	isoform X4
- UniProtKB:	A0A0D9R8L6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_008013671 ⟸ XM_008015480
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_008013670 ⟸ XM_008015479
- Peptide Label:	isoform X5

RefSeq Acc Id:

ENSCSAP00000004955 ⟸ ENSCSAT00000006760

RefSeq Acc Id:	XP_037848630 ⟸ XM_037992702
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_037848637 ⟸ XM_037992709
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_037848636 ⟸ XM_037992708
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_037848638 ⟸ XM_037992710
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_037848633 ⟸ XM_037992705
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_037848632 ⟸ XM_037992704
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_037848634 ⟸ XM_037992706
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_037848631 ⟸ XM_037992703
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_037848639 ⟸ XM_037992711
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_037848635 ⟸ XM_037992707
- Peptide Label:	isoform X2

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000008697	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000006760.1	UniProtKB/TrEMBL
InterPro	CRA_dom	UniProtKB/TrEMBL
	CTLH/CRA	UniProtKB/TrEMBL
	CTLH_C	UniProtKB/TrEMBL
	Fyv10_fam	UniProtKB/TrEMBL
	LisH	UniProtKB/TrEMBL
	RMD5B_dRING	UniProtKB/TrEMBL
	ZF_RING_GID	UniProtKB/TrEMBL
	Znf-RING_euk	UniProtKB/TrEMBL
NCBI Gene	RMND5B	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN TRANSFERASE RMND5B	UniProtKB/TrEMBL
	PTHR12170	UniProtKB/TrEMBL
Pfam	CLTH	UniProtKB/TrEMBL
	zf-RING_UBOX	UniProtKB/TrEMBL
PROSITE	CTLH	UniProtKB/TrEMBL
	LISH	UniProtKB/TrEMBL
	ZF_RING_GID	UniProtKB/TrEMBL
SMART	CRA	UniProtKB/TrEMBL
	CTLH	UniProtKB/TrEMBL
	LisH	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
UniProt	A0A0D9R8L6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD