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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:Familial Prostate Cancer
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Accession:DOID:9005539 term browser browse the term
Synonyms:exact_synonym: hereditary prostate cancer
 related_synonym: prostate cancer susceptibility
 primary_id: MESH:C537243



show annotations for term's descendants           Sort by:
Familial Prostate Cancer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrg1 adhesion G protein-coupled receptor G1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr19:10,003,963...10,041,122
Ensembl chr19:10,003,975...10,041,108
JBrowse link
G Ar androgen receptor ISO ClinVar Annotator: match by term: Prostate cancer susceptibility ClinVar PMID:8530589 PMID:10589774 PMID:11103816 PMID:28492532 NCBI chr  X:63,104,771...63,273,934
Ensembl chr  X:63,104,771...63,273,925
JBrowse link
G Arhgap6 Rho GTPase activating protein 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr  X:24,953,464...25,490,003
Ensembl chr  X:24,953,464...25,488,663
JBrowse link
G Atat1 alpha tubulin acetyltransferase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr20:2,844,595...2,857,809
Ensembl chr20:2,844,616...2,861,964
JBrowse link
G Atm ATM serine/threonine kinase ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Hereditary prostate cancer
CTD
ClinVar
PMID:15928302 PMID:16199547 PMID:16941484 PMID:17124347 PMID:17910737 More... NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G B3gat1 beta-1,3-glucuronyltransferase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 8:25,087,123...25,114,692
Ensembl chr 8:25,087,547...25,113,395
JBrowse link
G Bcas1 brain enriched myelin associated protein 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 3:159,136,077...159,219,072
Ensembl chr 3:159,136,083...159,219,106
JBrowse link
G Bcl2 BCL2, apoptosis regulator ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Bcl2l11 Bcl2-like 11 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 3:115,366,783...115,404,068
Ensembl chr 3:115,366,646...115,404,068
JBrowse link
G Bltp3a bridge-like lipid transfer protein family member 3A ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr20:5,910,261...5,954,641
Ensembl chr20:5,910,260...5,952,404
JBrowse link
G Brca1 BRCA1, DNA repair associated ISO ClinVar Annotator: match by term: Hereditary prostate cancer ClinVar PMID:17319787 PMID:18489799 PMID:20104584 PMID:21203900 PMID:25525159 More... NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304
JBrowse link
G C8h11orf65 similar to human chromosome 11 open reading frame 65 ISO ClinVar Annotator: match by term: Hereditary prostate cancer ClinVar PMID:15928302 PMID:16941484 PMID:17124347 PMID:17910737 PMID:19431188 More... NCBI chr 8:53,796,033...53,825,277
Ensembl chr 8:53,796,366...53,824,748
JBrowse link
G Casp8 caspase 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 9:60,263,863...60,312,542
Ensembl chr 9:60,264,075...60,312,542
JBrowse link
G Cdca7 cell division cycle associated 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 3:57,322,718...57,333,353
Ensembl chr 3:57,322,708...57,333,353
JBrowse link
G Cdh1 cadherin 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:14961571 PMID:16189707 NCBI chr19:34,492,371...34,561,775
Ensembl chr19:34,492,371...34,561,775
JBrowse link
G Cdkn1b cyclin-dependent kinase inhibitor 1B ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 4:167,760,067...167,765,177
Ensembl chr 4:167,760,181...167,764,982
JBrowse link
G Chd3 chromodomain helicase DNA binding protein 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr10:54,063,629...54,090,030
Ensembl chr10:54,063,629...54,090,047
JBrowse link
G Chek2 checkpoint kinase 2 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Hereditary prostate cancer
CTD
ClinVar
PMID:12533788 PMID:21876083 PMID:24713400 PMID:25741868 PMID:26467025 More... NCBI chr12:45,788,823...45,821,382
Ensembl chr12:45,788,827...45,821,286
JBrowse link
G Col23a1 collagen type XXIII alpha 1 chain ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr10:35,549,090...35,839,152
Ensembl chr10:35,549,113...35,836,314
JBrowse link
G Cyp3a2 cytochrome P450, family 3, subfamily a, polypeptide 2 no_association ISO RGD PMID:15180491 RGD:5685600 NCBI chr12:9,207,978...9,230,064
Ensembl chr12:9,015,383...9,285,008
JBrowse link
G Dennd4b DENN domain containing 4B ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 2:175,720,473...175,736,425
Ensembl chr 2:175,709,610...175,736,426
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 3:142,130,588...142,169,128
Ensembl chr 3:142,130,592...142,169,124
JBrowse link
G Dock2 dedicator of cytokinesis 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr10:18,827,237...19,244,832
Ensembl chr10:18,827,239...19,244,808
JBrowse link
G Emsy EMSY transcriptional repressor, BRCA2 interacting ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 1:152,881,485...152,960,420
Ensembl chr 1:152,883,992...152,953,528
JBrowse link
G Fbrsl1 fibrosin-like 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr12:46,231,466...46,320,607
Ensembl chr12:46,231,495...46,320,357
JBrowse link
G Haus6 HAUS augmin like complex subunit 6 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 5:101,116,532...101,156,396
Ensembl chr 5:101,119,300...101,153,124
JBrowse link
G Hoxb13 homeo box B13 ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Prostate cancer susceptibility
CTD
ClinVar
PMID:8756292 PMID:15964834 PMID:17138648 PMID:22236224 PMID:22714738 More... NCBI chr10:81,160,498...81,162,777
Ensembl chr10:81,160,498...81,162,777
JBrowse link
G Incenp inner centromere protein ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265
JBrowse link
G Itgb8 integrin subunit beta 8 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 6:140,125,002...140,208,261
Ensembl chr 6:140,127,203...140,208,476
JBrowse link
G Kdm2a lysine demethylase 2A ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 1:201,612,427...201,682,359
Ensembl chr 1:201,612,453...201,680,787
JBrowse link
G Knl1 kinetochore scaffold 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 3:106,029,627...106,091,915
Ensembl chr 3:106,029,661...106,091,915
JBrowse link
G Larp4b La ribonucleoprotein 4B ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr17:61,138,663...61,217,423
Ensembl chr17:61,138,709...61,187,960
JBrowse link
G LOC120099421 U6 spliceosomal RNA ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr  X:127,487,350...127,487,446
Ensembl chr  X:127,487,350...127,487,446
Ensembl chr  X:127,487,350...127,487,446
JBrowse link
G Mad1l1 mitotic arrest deficient 1 like 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr12:14,320,892...14,630,750
Ensembl chr12:14,320,892...14,630,703
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147
JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr18:64,174,002...64,240,795
Ensembl chr18:64,174,002...64,240,794
JBrowse link
G Mbnl1 muscleblind-like splicing regulator 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 2:144,639,819...144,814,395
Ensembl chr 2:144,670,285...144,814,368
JBrowse link
G Mecom MDS1 and EVI1 complex locus ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 2:112,909,353...113,464,583
Ensembl chr 2:112,909,321...113,464,590
JBrowse link
G Mmp14 matrix metallopeptidase 14 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr15:27,887,795...27,897,020
Ensembl chr15:27,887,727...27,899,864
JBrowse link
G Mob2 MOB kinase activator 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 1:197,092,991...197,149,978
Ensembl chr 1:197,092,994...197,149,933
JBrowse link
G Msh6 mutS homolog 6 ISO ClinVar Annotator: match by term: Hereditary prostate cancer ClinVar PMID:18269114 PMID:24362816 PMID:25741868 PMID:28492532 NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956
JBrowse link
G Myo9b myosin IXb ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr16:17,945,379...18,030,114
Ensembl chr16:17,945,448...18,030,126
JBrowse link
G Pax9 paired box 9 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 6:74,186,749...74,203,508
Ensembl chr 6:74,182,568...74,203,506
JBrowse link
G Pknox2 PBX/knotted 1 homeobox 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 8:36,600,633...36,863,131
Ensembl chr 8:36,600,636...36,790,940
JBrowse link
G Pou2f2 POU class 2 homeobox 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 1:80,682,330...80,769,756
Ensembl chr 1:80,685,741...80,724,261
JBrowse link
G Ppfibp2 PPFIA binding protein 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 1:161,504,774...161,687,339
Ensembl chr 1:161,504,890...161,655,212
JBrowse link
G Rassf3 Ras association domain family member 3 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 7:56,935,888...57,000,554
Ensembl chr 7:56,935,973...57,000,553
JBrowse link
G Rfx7 regulatory factor X, 7 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 8:73,254,051...73,339,209
Ensembl chr 8:73,254,051...73,339,209
JBrowse link
G Rnasel ribonuclease L ISO CTD Direct Evidence: marker/mechanism CTD NCBI chr13:65,894,990...65,910,354
Ensembl chr13:65,901,459...65,908,704
JBrowse link
G Rnf43 ring finger protein 43 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr10:72,461,508...72,537,301
Ensembl chr10:72,464,348...72,536,977
JBrowse link
G Rnls renalase, FAD-dependent amine oxidase ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 1:231,037,481...231,309,855
Ensembl chr 1:231,037,486...231,309,823
JBrowse link
G RT1-DOa RT1 class II, locus DOa ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr20:4,753,587...4,756,590
Ensembl chr20:4,753,598...4,756,577
JBrowse link
G Sugct succinylCoA:glutarate-CoA transferase ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr17:47,376,392...48,234,362
Ensembl chr17:47,376,521...48,234,376
JBrowse link
G Tcf4 transcription factor 4 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr18:62,941,739...63,288,126
Ensembl chr18:62,943,782...63,284,425
JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 1:254,785,956...254,978,967
Ensembl chr 1:254,786,091...254,978,967
JBrowse link
G Tor1a torsin family 1, member A ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr 3:14,250,667...14,257,704
Ensembl chr 3:14,250,676...14,257,691
JBrowse link
G Tshz1 teashirt zinc finger homeobox 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr18:77,376,399...77,452,815
Ensembl chr18:77,377,394...77,453,509
JBrowse link
G Ttc28 tetratricopeptide repeat domain 28 ISO CTD Direct Evidence: marker/mechanism CTD PMID:29892016 NCBI chr12:45,342,986...45,783,968
Ensembl chr12:45,345,399...45,783,547
JBrowse link
Prostate Cancer, Hereditary, 1 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Braf B-Raf proto-oncogene, serine/threonine kinase ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 1 ClinVar PMID:12068308 PMID:12460918 PMID:12460919 PMID:14679157 PMID:15035987 More... NCBI chr 4:68,375,484...68,510,652
Ensembl chr 4:68,384,649...68,510,463
JBrowse link
G Hoxb13 homeo box B13 ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 1 ClinVar PMID:9536098 PMID:17576681 PMID:25741868 PMID:26467025 PMID:28492532 NCBI chr10:81,160,498...81,162,777
Ensembl chr10:81,160,498...81,162,777
JBrowse link
G Hras HRas proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 1 ClinVar NCBI chr 1:196,290,127...196,299,823
Ensembl chr 1:196,296,263...196,300,615
JBrowse link
G Kras KRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 1 ClinVar PMID:17056636 PMID:17468812 PMID:17704260 PMID:18386799 PMID:20949621 More... NCBI chr 4:178,185,418...178,218,484 JBrowse link
G Lrrc56 leucine rich repeat containing 56 ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 1 ClinVar NCBI chr 1:196,299,843...196,315,170
Ensembl chr 1:196,299,846...196,315,172
JBrowse link
G Nras NRAS proto-oncogene, GTPase ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 1 ClinVar NCBI chr 2:190,582,885...190,593,509
Ensembl chr 2:190,582,918...190,591,626
JBrowse link
G Pten phosphatase and tensin homolog ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 1 ClinVar PMID:9467011 PMID:9600246 PMID:10051160 PMID:12786840 PMID:16773562 More... NCBI chr 1:230,630,443...230,697,070
Ensembl chr 1:230,630,338...230,696,838
JBrowse link
G Rnasel ribonuclease L ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 1 OMIM
ClinVar
PMID:11799394 PMID:12415269 PMID:16609730 PMID:25741868 PMID:28492532 NCBI chr13:65,894,990...65,910,354
Ensembl chr13:65,901,459...65,908,704
JBrowse link
G Tp53 tumor protein p53 ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 1 ClinVar PMID:12826609 PMID:20522432 PMID:25741868 PMID:27545002 PMID:28492532 More... NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
Prostate Cancer, Hereditary, 12 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ehbp1 EH domain binding protein 1 ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 12
CTD Direct Evidence: marker/mechanism
OMIM
ClinVar
CTD
PMID:18264098 NCBI chr14:96,093,327...96,380,502
Ensembl chr14:96,093,327...96,345,332
JBrowse link
Prostate Cancer, Hereditary, 13 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Msmb microseminoprotein, beta ISO CTD Direct Evidence: marker/mechanism
ClinVar Annotator: match by term: Prostate cancer, hereditary, 13
OMIM
CTD
ClinVar
PMID:18264096 PMID:18264097 PMID:19153072 PMID:19383797 PMID:19644707 NCBI chr16:7,366,536...7,387,124
Ensembl chr16:7,366,536...7,387,123
JBrowse link
Prostate Cancer, Hereditary, 2 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac2 elaC ribonuclease Z 2 susceptibility ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 2 ClinVar
OMIM
PMID:10986046 PMID:11175785 PMID:11254448 PMID:11507049 PMID:12515253 More... NCBI chr10:49,632,308...49,655,614
Ensembl chr10:49,632,378...49,655,614
JBrowse link
Prostate Cancer, Hereditary, 9 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxb13 homeo box B13 ISO ClinVar Annotator: match by term: Prostate cancer, hereditary, 9
CTD Direct Evidence: marker/mechanism
OMIM
ClinVar
CTD
PMID:8756292 PMID:15964834 PMID:17138648 PMID:22236224 PMID:22714738 More... NCBI chr10:81,160,498...81,162,777
Ensembl chr10:81,160,498...81,162,777
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 18969
    disease of anatomical entity 18249
      reproductive system disease 3010
        reproductive organ cancer 1266
          male reproductive organ cancer 835
            prostate cancer 831
              Familial Prostate Cancer 68
                Prostate Cancer, Hereditary, 1 9
                Prostate Cancer, Hereditary, 10 0
                Prostate Cancer, Hereditary, 11 0
                Prostate Cancer, Hereditary, 12 1
                Prostate Cancer, Hereditary, 13 1
                Prostate Cancer, Hereditary, 14 0
                Prostate Cancer, Hereditary, 15 0
                Prostate Cancer, Hereditary, 2 1
                Prostate Cancer, Hereditary, 3 0
                Prostate Cancer, Hereditary, 4 0
                Prostate Cancer, Hereditary, 5 0
                Prostate Cancer, Hereditary, 6 0
                Prostate Cancer, Hereditary, 7 0
                Prostate Cancer, Hereditary, 8 0
                Prostate Cancer, Hereditary, 9 1
                Prostate Cancer, Hereditary, X-Linked 1 0
                Prostate Cancer, Hereditary, X-Linked 2 0
Path 2
Term Annotations click to browse term
  disease 18969
    disease of anatomical entity 18249
      Urogenital Diseases 5233
        reproductive system disease 3010
          male reproductive system disease 2012
            Male Genital Neoplasms 1337
              Prostatic Neoplasms 1309
                prostate cancer 831
                  Familial Prostate Cancer 68
                    Prostate Cancer, Hereditary, 1 9
                    Prostate Cancer, Hereditary, 10 0
                    Prostate Cancer, Hereditary, 11 0
                    Prostate Cancer, Hereditary, 12 1
                    Prostate Cancer, Hereditary, 13 1
                    Prostate Cancer, Hereditary, 14 0
                    Prostate Cancer, Hereditary, 15 0
                    Prostate Cancer, Hereditary, 2 1
                    Prostate Cancer, Hereditary, 3 0
                    Prostate Cancer, Hereditary, 4 0
                    Prostate Cancer, Hereditary, 5 0
                    Prostate Cancer, Hereditary, 6 0
                    Prostate Cancer, Hereditary, 7 0
                    Prostate Cancer, Hereditary, 8 0
                    Prostate Cancer, Hereditary, 9 1
                    Prostate Cancer, Hereditary, X-Linked 1 0
                    Prostate Cancer, Hereditary, X-Linked 2 0
paths to the root