Bcas1 (brain enriched myelin associated protein 1) - Rat Genome Database

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Gene: Bcas1 (brain enriched myelin associated protein 1) Rattus norvegicus
Analyze
Symbol: Bcas1
Name: brain enriched myelin associated protein 1
RGD ID: 628644
Description: Predicted to be involved in myelination. Located in cytoplasm. Is active in synapse. Orthologous to human BCAS1 (brain enriched myelin associated protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: band 83; Band83; breast carcinoma amplified sequence 1; breast carcinoma-amplified sequence 1 homolog; PMES-2; Pmes-2 ed; Pmes-2b; Pmes-2c; Pmes-2d; protein whose mRNA is enriched in synaptosomes 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83179,554,754 - 179,637,800 (-)NCBIGRCr8
mRatBN7.23159,136,077 - 159,219,072 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3159,136,083 - 159,219,106 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3162,936,261 - 163,011,272 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03171,435,535 - 171,510,911 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03169,177,129 - 169,252,136 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03167,957,994 - 168,033,462 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3167,957,994 - 168,033,457 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03174,061,259 - 174,143,949 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43161,395,062 - 161,475,655 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13161,301,379 - 161,363,959 (-)NCBI
Celera3157,679,729 - 157,755,458 (-)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
myelination  (IBA,IEA,ISO,ISS)

Cellular Component
cytoplasm  (IDA)
synapse  (IDA,IEP)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Cloning and characterization of a novel synaptosome-enriched mRNA that encodes 31 kDa protein. Ishimoto T, etal., Biochim Biophys Acta 2002 Dec 12;1579(2-3):189-95.
3. Subcellular localization of PMES-2 proteins regulated by their two cytoskeleton-associated domains. Ninomiya K, etal., Cell Mol Neurobiol. 2005 Aug;25(5):899-911. doi: 10.1007/s10571-005-4955-5.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:22871113   PMID:23533145   PMID:28230289  


Genomics

Comparative Map Data
Bcas1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83179,554,754 - 179,637,800 (-)NCBIGRCr8
mRatBN7.23159,136,077 - 159,219,072 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3159,136,083 - 159,219,106 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3162,936,261 - 163,011,272 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03171,435,535 - 171,510,911 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03169,177,129 - 169,252,136 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03167,957,994 - 168,033,462 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3167,957,994 - 168,033,457 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03174,061,259 - 174,143,949 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43161,395,062 - 161,475,655 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13161,301,379 - 161,363,959 (-)NCBI
Celera3157,679,729 - 157,755,458 (-)NCBICelera
Cytogenetic Map3q42NCBI
BCAS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382053,943,541 - 54,070,594 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2053,936,777 - 54,070,594 (-)EnsemblGRCh38hg38GRCh38
GRCh372052,560,080 - 52,687,133 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362051,993,924 - 52,120,490 (-)NCBINCBI36Build 36hg18NCBI36
Build 342051,993,923 - 52,120,490NCBI
Celera2049,264,729 - 49,391,950 (-)NCBICelera
Cytogenetic Map20q13.2NCBI
HuRef2049,306,639 - 49,433,877 (-)NCBIHuRef
CHM1_12052,463,305 - 52,590,487 (-)NCBICHM1_1
T2T-CHM13v2.02055,717,036 - 55,844,502 (-)NCBIT2T-CHM13v2.0
Bcas1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392170,188,911 - 170,270,292 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2170,188,911 - 170,269,765 (-)EnsemblGRCm39 Ensembl
GRCm382170,343,973 - 170,427,911 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2170,346,991 - 170,427,845 (-)EnsemblGRCm38mm10GRCm38
MGSCv372170,172,491 - 170,253,345 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362170,038,353 - 170,119,033 (-)NCBIMGSCv36mm8
Celera2176,300,838 - 176,381,866 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map291.41NCBI
Bcas1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554454,951,433 - 5,055,238 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554454,951,645 - 5,049,925 (+)NCBIChiLan1.0ChiLan1.0
BCAS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22159,695,796 - 59,811,187 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12059,688,917 - 59,804,308 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02050,289,582 - 50,375,287 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12051,512,049 - 51,639,255 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2051,509,978 - 51,639,255 (-)Ensemblpanpan1.1panPan2
BCAS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12439,702,242 - 39,799,787 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2439,699,931 - 39,800,185 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2438,948,017 - 39,045,353 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02440,414,597 - 40,512,333 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2440,408,542 - 40,512,738 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12439,650,765 - 39,748,311 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02439,786,034 - 39,883,711 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02440,368,393 - 40,466,014 (-)NCBIUU_Cfam_GSD_1.0
Bcas1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640186,093,188 - 186,184,931 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365141,561,848 - 1,638,722 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365141,546,833 - 1,634,269 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCAS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1754,920,712 - 55,039,346 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11754,920,714 - 55,039,470 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21761,650,565 - 61,658,234 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21761,712,035 - 61,809,255 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BCAS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.129,972,244 - 10,098,126 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl29,972,433 - 10,096,747 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605058,104,958 - 58,218,708 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bcas1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247902,294,457 - 2,385,954 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247902,285,607 - 2,385,582 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Bcas1
786 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:178
Count of miRNA genes:140
Interacting mature miRNAs:158
Transcripts:ENSRNOT00000055111
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141339013162184794Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3145925360166177555Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3145925360166177555Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3145925360166177555Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3145925360166177555Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3145925360166177555Rat
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3145925360166177555Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145925360166177555Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3145956084161299569Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat

Markers in Region
D3Rat136  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23159,180,483 - 159,180,698 (+)MAPPERmRatBN7.2
Rnor_6.03168,002,025 - 168,002,239NCBIRnor6.0
Rnor_5.03174,105,307 - 174,105,521UniSTSRnor5.0
RGSC_v3.43161,441,537 - 161,441,752RGDRGSC3.4
RGSC_v3.43161,441,538 - 161,441,752UniSTSRGSC3.4
RGSC_v3.13161,347,573 - 161,347,788RGD
Celera3157,723,984 - 157,724,195UniSTS
SHRSP x BN Map384.5699RGD
SHRSP x BN Map384.5699UniSTS
Cytogenetic Map3q42UniSTS
RH139526  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23159,136,607 - 159,136,798 (+)MAPPERmRatBN7.2
Rnor_6.03167,958,368 - 167,958,558NCBIRnor6.0
Rnor_5.03174,061,634 - 174,061,824UniSTSRnor5.0
RGSC_v3.43161,395,436 - 161,395,626UniSTSRGSC3.4
Celera3157,680,103 - 157,680,293UniSTS
RH 3.4 Map31493.8UniSTS
Cytogenetic Map3q42UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 44 1
Low 4 24 15 8 15 7 7 30 21 3 7
Below cutoff 35 20 14 11 14 1 4 29 17 7 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000055111   ⟹   ENSRNOP00000051984
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3159,136,234 - 159,219,106 (-)Ensembl
Rnor_6.0 Ensembl3167,957,994 - 168,033,457 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000087579   ⟹   ENSRNOP00000071338
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3159,136,234 - 159,219,106 (-)Ensembl
Rnor_6.0 Ensembl3167,958,276 - 168,018,410 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101069   ⟹   ENSRNOP00000087069
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3159,136,516 - 159,219,106 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115742   ⟹   ENSRNOP00000094246
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3159,136,234 - 159,219,106 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115872   ⟹   ENSRNOP00000096594
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3159,136,083 - 159,219,106 (-)Ensembl
RefSeq Acc Id: NM_001415675   ⟹   NP_001402604
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83179,554,754 - 179,637,743 (-)NCBI
mRatBN7.23159,136,077 - 159,219,072 (-)NCBI
RefSeq Acc Id: NM_145670   ⟹   NP_663703
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83179,554,754 - 179,637,743 (-)NCBI
mRatBN7.23159,136,077 - 159,219,072 (-)NCBI
Rnor_6.03167,957,994 - 168,033,457 (-)NCBI
Rnor_5.03174,061,259 - 174,143,949 (-)NCBI
RGSC_v3.43161,395,062 - 161,475,655 (-)RGD
Celera3157,679,729 - 157,755,458 (-)RGD
Sequence:
RefSeq Acc Id: XM_063283092   ⟹   XP_063139162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83179,554,911 - 179,637,791 (-)NCBI
RefSeq Acc Id: XM_063283093   ⟹   XP_063139163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83179,554,911 - 179,637,791 (-)NCBI
RefSeq Acc Id: XM_063283094   ⟹   XP_063139164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83179,554,911 - 179,637,800 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_663703   ⟸   NM_145670
- Peptide Label: isoform 2
- UniProtKB: Q5TLH1 (UniProtKB/Swiss-Prot),   Q5TLH0 (UniProtKB/Swiss-Prot),   Q5TLG9 (UniProtKB/Swiss-Prot),   Q5TLG8 (UniProtKB/Swiss-Prot),   Q52KK0 (UniProtKB/Swiss-Prot),   Q3ZB98 (UniProtKB/Swiss-Prot),   Q8K4U9 (UniProtKB/Swiss-Prot),   F1LN49 (UniProtKB/TrEMBL),   A0A8I6AQA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000051984   ⟸   ENSRNOT00000055111
RefSeq Acc Id: ENSRNOP00000071338   ⟸   ENSRNOT00000087579
RefSeq Acc Id: ENSRNOP00000096594   ⟸   ENSRNOT00000115872
RefSeq Acc Id: ENSRNOP00000094246   ⟸   ENSRNOT00000115742
RefSeq Acc Id: ENSRNOP00000087069   ⟸   ENSRNOT00000101069
RefSeq Acc Id: NP_001402604   ⟸   NM_001415675
- Peptide Label: isoform 1
- UniProtKB: A0A0G2K079 (UniProtKB/TrEMBL),   A6JXS4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139164   ⟸   XM_063283094
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063139163   ⟸   XM_063283093
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063139162   ⟸   XM_063283092
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3ZB98-F1-model_v2 AlphaFold Q3ZB98 1-589 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692705
Promoter ID:EPDNEW_R3225
Type:single initiation site
Name:Bcas1_1
Description:breast carcinoma amplified sequence 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03168,018,411 - 168,018,471EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628644 AgrOrtholog
BioCyc Gene G2FUF-46620 BioCyc
Ensembl Genes ENSRNOG00000012906 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00060001062 UniProtKB/Swiss-Prot
  ENSRNOG00065013895 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000055111 ENTREZGENE
  ENSRNOT00000055111.4 UniProtKB/Swiss-Prot
  ENSRNOT00000087579 ENTREZGENE
  ENSRNOT00000087579.2 UniProtKB/TrEMBL
  ENSRNOT00000101069.1 UniProtKB/TrEMBL
  ENSRNOT00000115742.1 UniProtKB/Swiss-Prot
  ENSRNOT00000115872.1 UniProtKB/TrEMBL
  ENSRNOT00060001448 UniProtKB/Swiss-Prot
  ENSRNOT00065022954 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7313637 IMAGE-MGC_LOAD
  IMAGE:7939378 IMAGE-MGC_LOAD
InterPro NABC1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:246755 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105313 IMAGE-MGC_LOAD
  MGC:124561 IMAGE-MGC_LOAD
NCBI Gene 246755 ENTREZGENE
PANTHER BREAST CARCINOMA-AMPLIFIED SEQUENCE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15016 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Bcas1 PhenoGen
RatGTEx ENSRNOG00000012906 RatGTEx
  ENSRNOG00060001062 RatGTEx
  ENSRNOG00065013895 RatGTEx
UniProt A0A0G2K079 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A7B6_RAT UniProtKB/TrEMBL
  A0A8I6AQA4 ENTREZGENE, UniProtKB/TrEMBL
  A6JXS4 ENTREZGENE, UniProtKB/TrEMBL
  BCAS1_RAT UniProtKB/Swiss-Prot
  F1LN49 ENTREZGENE
  Q3ZB98 ENTREZGENE
  Q52KK0 ENTREZGENE
  Q5TLG8 ENTREZGENE
  Q5TLG9 ENTREZGENE
  Q5TLH0 ENTREZGENE
  Q5TLH1 ENTREZGENE
  Q8K4U9 ENTREZGENE
UniProt Secondary F1LN49 UniProtKB/Swiss-Prot
  Q52KK0 UniProtKB/Swiss-Prot
  Q5TLG8 UniProtKB/Swiss-Prot
  Q5TLG9 UniProtKB/Swiss-Prot
  Q5TLH0 UniProtKB/Swiss-Prot
  Q5TLH1 UniProtKB/Swiss-Prot
  Q8K4U9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-04-28 Bcas1  brain enriched myelin associated protein 1  Bcas1  breast carcinoma amplified sequence 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Bcas1  breast carcinoma amplified sequence 1  Band83  band 83  Symbol and Name updated 1299863 APPROVED
2003-02-27 Band83  band 83      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localized in the postsynaptic density 632030
gene_expression expressed only in brain, abundant in the dendrites of the hippocampal neurons 632030
gene_protein 31 kDa 632030