Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Familial Prostate Cancer | | ISO | LARP4B (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:29892016 | |
|
Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Familial Prostate Cancer | | ISO | LARP4B (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:29892016 | |
|
|
|
|
# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | GOA pipeline | RGD automated data pipeline |
3. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Larp4b (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LARP4B (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Larp4b (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Larp4b (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LARP4B (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LARP4B (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Larp4b (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LARP4B (Sus scrofa - pig) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
LARP4B (Chlorocebus sabaeus - green monkey) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Larp4b (Heterocephalus glaber - naked mole-rat) |
|
.
Variants in Larp4b
272 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
D17Rat124 |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
RH129270 |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
AA849380 |
|
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 42 | 57 | 41 | 19 | 41 | 8 | 10 | 74 | 35 | 41 | 11 | 8 |
Low | 1 | 1 | |||||||||||
Below cutoff |
RefSeq Transcripts | NM_001107361 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_039095755 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095756 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095757 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095758 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095760 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095761 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095762 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095763 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039095764 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063276484 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063276485 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063276486 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063276487 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063276488 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063276489 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063276490 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_010058882 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | CH474071 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
JAXUCZ010000017 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000058548 ⟹ ENSRNOP00000055347 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000077471 ⟹ ENSRNOP00000073054 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000095591 ⟹ ENSRNOP00000091873 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | ENSRNOT00000120050 ⟹ ENSRNOP00000089771 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | NM_001107361 ⟹ NP_001100831 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
|
||||||||||||||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_039095755 ⟹ XP_038951683 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_039095756 ⟹ XP_038951684 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_039095757 ⟹ XP_038951685 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_039095758 ⟹ XP_038951686 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_039095760 ⟹ XP_038951688 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_039095761 ⟹ XP_038951689 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_039095762 ⟹ XP_038951690 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_039095763 ⟹ XP_038951691 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_039095764 ⟹ XP_038951692 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_063276484 ⟹ XP_063132554 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063276485 ⟹ XP_063132555 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063276486 ⟹ XP_063132556 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063276487 ⟹ XP_063132557 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063276488 ⟹ XP_063132558 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063276489 ⟹ XP_063132559 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XM_063276490 ⟹ XP_063132560 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | XR_010058882 | ||||||||
Type: | NON-CODING | ||||||||
Position: |
|
Protein RefSeqs | NP_001100831 | (Get FASTA) | NCBI Sequence Viewer |
XP_038951683 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951684 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951685 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951686 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951688 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951689 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951690 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951691 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038951692 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063132554 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063132555 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063132556 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063132557 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063132558 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063132559 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063132560 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDM06963 | (Get FASTA) | NCBI Sequence Viewer |
EDM06964 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000055347 | ||
ENSRNOP00000055347.4 | |||
ENSRNOP00000073054 | |||
ENSRNOP00000073054.2 | |||
ENSRNOP00000089771 | |||
ENSRNOP00000089771.1 | |||
ENSRNOP00000091873.1 |
RefSeq Acc Id: | NP_001100831 ⟸ NM_001107361 |
- UniProtKB: | A6KN12 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000073054 ⟸ ENSRNOT00000077471 |
RefSeq Acc Id: | ENSRNOP00000055347 ⟸ ENSRNOT00000058548 |
RefSeq Acc Id: | XP_038951684 ⟸ XM_039095756 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_038951692 ⟸ XM_039095764 |
- Peptide Label: | isoform X11 |
RefSeq Acc Id: | XP_038951686 ⟸ XM_039095758 |
- Peptide Label: | isoform X3 |
- UniProtKB: | D3ZF45 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951691 ⟸ XM_039095763 |
- Peptide Label: | isoform X12 |
RefSeq Acc Id: | XP_038951690 ⟸ XM_039095762 |
- Peptide Label: | isoform X10 |
RefSeq Acc Id: | XP_038951689 ⟸ XM_039095761 |
- Peptide Label: | isoform X9 |
RefSeq Acc Id: | XP_038951688 ⟸ XM_039095760 |
- Peptide Label: | isoform X5 |
RefSeq Acc Id: | XP_038951685 ⟸ XM_039095757 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A0G2K4I2 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038951683 ⟸ XM_039095755 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | ENSRNOP00000091873 ⟸ ENSRNOT00000095591 |
RefSeq Acc Id: | ENSRNOP00000089771 ⟸ ENSRNOT00000120050 |
RefSeq Acc Id: | XP_063132555 ⟸ XM_063276485 |
- Peptide Label: | isoform X4 |
- UniProtKB: | A6KN12 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063132554 ⟸ XM_063276484 |
- Peptide Label: | isoform X3 |
- UniProtKB: | D3ZF45 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063132559 ⟸ XM_063276489 |
- Peptide Label: | isoform X11 |
RefSeq Acc Id: | XP_063132560 ⟸ XM_063276490 |
- Peptide Label: | isoform X13 |
RefSeq Acc Id: | XP_063132558 ⟸ XM_063276488 |
- Peptide Label: | isoform X8 |
RefSeq Acc Id: | XP_063132557 ⟸ XM_063276487 |
- Peptide Label: | isoform X7 |
- UniProtKB: | A0A8I6A8U8 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063132556 ⟸ XM_063276486 |
- Peptide Label: | isoform X6 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D3ZF45-F1-model_v2 | AlphaFold | D3ZF45 | 1-737 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1310713 | AgrOrtholog |
BioCyc Gene | G2FUF-8902 | BioCyc |
Ensembl Genes | ENSRNOG00000015888 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000058548.5 | UniProtKB/TrEMBL |
ENSRNOT00000077471.2 | UniProtKB/TrEMBL | |
ENSRNOT00000095591.1 | UniProtKB/TrEMBL | |
ENSRNOT00000120050.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.10.10 | UniProtKB/TrEMBL |
InterPro | La_dom_prot | UniProtKB/TrEMBL |
LARP5_RRM | UniProtKB/TrEMBL | |
Lupus_La_RNA-bd | UniProtKB/TrEMBL | |
RBD_domain_sf | UniProtKB/TrEMBL | |
WH-like_DNA-bd_sf | UniProtKB/TrEMBL | |
WH_DNA-bd_sf | UniProtKB/TrEMBL | |
KEGG Report | rno:307070 | UniProtKB/TrEMBL |
NCBI Gene | 307070 | ENTREZGENE |
PANTHER | LA-RELATED PROTEIN 4B | UniProtKB/TrEMBL |
PTHR22792 | UniProtKB/TrEMBL | |
Pfam | PF05383 | UniProtKB/TrEMBL |
PhenoGen | Larp4b | PhenoGen |
PROSITE | HTH_LA | UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000015888 | RatGTEx |
SMART | SM00715 | UniProtKB/TrEMBL |
Superfamily-SCOP | SSF46785 | UniProtKB/TrEMBL |
SSF54928 | UniProtKB/TrEMBL | |
UniProt | A0A0G2K4I2 | ENTREZGENE, UniProtKB/TrEMBL |
A0A8I6A8U8 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I6AUI4_RAT | UniProtKB/TrEMBL | |
A6KN12 | ENTREZGENE, UniProtKB/TrEMBL | |
D3ZF45 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2019-09-13 | Larp4b | La ribonucleoprotein 4B | Larp4b | La ribonucleoprotein domain family, member 4B | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2012-01-17 | Larp4b | La ribonucleoprotein domain family, member 4B | Larp5 | La ribonucleoprotein domain family, member 5 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-04-30 | Larp5 | La ribonucleoprotein domain family, member 5 | Larp5_predicted | La ribonucleoprotein domain family, member 5 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2006-03-30 | Larp5_predicted | La ribonucleoprotein domain family, member 5 (predicted) | RGD1310713_predicted | similar to expressed sequence AI256361 (predicted) | Symbol and Name updated | 1299863 | APPROVED |
2005-01-20 | RGD1310713_predicted | similar to expressed sequence AI256361 (predicted) | LOC307070_predicted | Symbol and Name status set to approved | 1331353 | APPROVED | |
2005-01-12 | LOC307070_predicted | similar to expressed sequence AI256361 (predicted) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |