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Gene: Inpp4a (inositol polyphosphate-4-phosphatase type I A) Rattus norvegicus

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Symbol:

Inpp4a

Name:

inositol polyphosphate-4-phosphatase type I A

RGD ID:

68386

Description:

Predicted to enable phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity. Predicted to be involved in regulation of postsynaptic membrane neurotransmitter receptor levels. Predicted to be located in nuclear membrane; nucleoplasm; and postsynaptic density. Predicted to be active in cytoplasm and glutamatergic synapse. Orthologous to human INPP4A (inositol polyphosphate-4-phosphatase type I A); PARTICIPATES IN inositol metabolic pathway; inositol phosphate metabolic pathway; phosphatidylinositol 3-kinase signaling pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

inositol polyphosphate 4-phosphatase type I; inositol polyphosphate-4-phosphatase type I 107kD; inositol polyphosphate-4-phosphatase, type 1; inositol polyphosphate-4-phosphatase, type I; inositol polyphosphate-4-phosphatase, type I, 107kD; type I inositol 3,4-bisphosphate 4-phosphatase; type I inositol-3,4-bisphosphate 4-phosphatase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	47,024,064 - 47,142,391 (+)	NCBI		GRCr8
mRatBN7.2	9	39,528,245 - 39,650,574 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	39,528,674 - 39,646,581 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	48,024,733 - 48,142,652 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	53,147,494 - 53,265,400 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	51,429,369 - 51,547,271 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	43,889,887 - 44,006,593 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	43,889,473 - 44,004,325 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	43,533,507 - 43,707,953 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	36,238,645 - 36,356,933 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	36,240,058 - 36,358,347 (+)	NCBI
Celera	9	37,284,544 - 37,400,878 (+)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant dyskeratosis congenita 1 (ISO)

basal cell carcinoma (ISO)

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,6-dinitrotoluene (EXP)

3H-1,2-dithiole-3-thione (EXP)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

CGP 52608 (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

doxorubicin (ISO)

endosulfan (EXP)

enzyme inhibitor (ISO)

ethanol (ISO)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

lead(0) (ISO)

maneb (ISO)

methapyrilene (ISO)

methimazole (EXP)

methotrexate (ISO)

methoxychlor (EXP)

nickel atom (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

PCB138 (ISO)

quercitrin (ISO)

resveratrol (ISO)

sulfadimethoxine (EXP)

titanium dioxide (ISO)

triadimefon (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

phosphatidylinositol-3-phosphate biosynthetic process (IEA)

regulation of postsynaptic membrane neurotransmitter receptor levels (ISO)

Cellular Component

cytoplasm (IBA,IEA,ISO,ISS)

early endosome membrane (IEA)

glutamatergic synapse (ISO)

membrane (IEA)

nuclear membrane (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (ISO,ISS)

plasma membrane (IEA)

postsynaptic density (ISO,ISS)

recycling endosome membrane (IEA)

Molecular Function

inositol-1,3,4-trisphosphate 4-phosphatase activity (IEA)

inositol-3,4-bisphosphate 4-phosphatase activity (IEA)

phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity (IBA,IEA,TAS)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

inositol metabolic pathway (ISO)

inositol phosphate metabolic pathway (IEA,ISO)

phosphatidylinositol 3-kinase signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	The isolation and characterization of cDNA encoding human and rat brain inositol polyphosphate 4-phosphatase.	Norris FA, etal., J Biol Chem 1995 Jul 7;270(27):16128-33.
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Additional References at PubMed

PMID:8889548	PMID:20463662	PMID:30053369	PMID:30071275

Genomics

Comparative Map Data

Inpp4a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	47,024,064 - 47,142,391 (+)	NCBI		GRCr8
mRatBN7.2	9	39,528,245 - 39,650,574 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	39,528,674 - 39,646,581 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	48,024,733 - 48,142,652 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	53,147,494 - 53,265,400 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	51,429,369 - 51,547,271 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	43,889,887 - 44,006,593 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	43,889,473 - 44,004,325 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	43,533,507 - 43,707,953 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	36,238,645 - 36,356,933 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	36,240,058 - 36,358,347 (+)	NCBI
Celera	9	37,284,544 - 37,400,878 (+)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

INPP4A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	98,444,587 - 98,594,392 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	98,444,854 - 98,594,392 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	99,061,050 - 99,210,855 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	98,501,857 - 98,570,614 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	98,519,930 - 98,662,684	NCBI
Celera	2	93,265,040 - 93,411,219 (+)	NCBI		Celera
Cytogenetic Map	2	q11.2	NCBI
HuRef	2	92,826,490 - 92,972,083 (+)	NCBI		HuRef
CHM1_1	2	99,065,634 - 99,211,815 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	98,902,886 - 99,052,718 (+)	NCBI		T2T-CHM13v2.0

Inpp4a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	37,338,908 - 37,449,821 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	37,338,946 - 37,449,817 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	37,299,827 - 37,410,740 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	37,299,865 - 37,410,736 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	37,356,738 - 37,467,581 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	37,302,465 - 37,352,805 (+)	NCBI		MGSCv36	mm8
Celera	1	37,079,390 - 37,192,754 (+)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	15.46	NCBI

Inpp4a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	4,930,568 - 5,040,383 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955470	4,930,568 - 5,040,153 (+)	NCBI	ChiLan1.0	ChiLan1.0

INPP4A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	29,853,793 - 29,999,903 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	29,857,185 - 30,002,660 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	100,720,587 - 100,867,228 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	99,355,307 - 99,499,350 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	99,428,904 - 99,499,350 (+)	Ensembl	panpan1.1		panPan2

INPP4A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	44,086,533 - 44,221,225 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	44,089,025 - 44,145,506 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	44,008,800 - 44,143,763 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	44,959,356 - 45,094,368 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	44,959,356 - 45,094,231 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	44,669,735 - 44,804,682 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	44,960,705 - 45,095,469 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	45,136,428 - 45,271,376 (-)	NCBI		UU_Cfam_GSD_1.0

Inpp4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	84,307,312 - 84,439,129 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936744	1,629,438 - 1,693,141 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936744	1,629,432 - 1,692,069 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

INPP4A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	55,711,031 - 55,834,367 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	55,711,025 - 55,779,579 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	58,266,124 - 58,307,943 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

INPP4A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	2,161,649 - 2,306,023 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	2,235,510 - 2,302,858 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	169,681,423 - 169,826,862 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Inpp4a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	3,574,625 - 3,632,581 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624749	3,508,135 - 3,632,581 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Inpp4a
804 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	484
Count of miRNA genes:	160
Interacting mature miRNAs:	178
Transcripts:	ENSRNOT00000024152, ENSRNOT00000024330
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	32535505	77535505	Rat
1300180	Bw14	Body weight QTL 14	3.776		body mass (VT:0001259)	body weight (CMO:0000012)	9	23754024	61381613	Rat
631680	Cm11	Cardiac mass QTL 11	3.1	0.00089	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	9	20430519	65430519	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	25268044	79271759	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	1254084	46254084	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	40594091	Rat
7207805	Bmd88	Bone mineral density QTL 88	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	9	23754024	58157242	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	22071200	67071200	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
9589133	Insul26	Insulin level QTL 26	17.96	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	9	8952560	53952560	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5109826	50109826	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	1254084	46254084	Rat
7411609	Foco16	Food consumption QTL 16	25.6	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	8952560	53952560	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	36962359	77814038	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	22071169	86369743	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	23754144	83851531	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	1	43718459	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5109826	42921101	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
724543	Cm20	Cardiac mass QTL 20	3.9		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	9	16961398	40594091	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	13533770	42791750	Rat
11353947	Bp392	Blood pressure QTL 392			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	7283252	52283252	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	32535505	77535505	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	1	43718459	Rat
1598823	Memor16	Memory QTL 16	1.9		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	22133322	49968732	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	27468639	72468639	Rat

Markers in Region

D9Rat189

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	39,584,434 - 39,584,583 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	43,945,642 - 43,945,788	NCBI	Rnor6.0
Rnor_5.0	9	43,589,412 - 43,589,558	UniSTS	Rnor5.0
RGSC_v3.4	9	36,295,591 - 36,295,738	RGD	RGSC3.4
RGSC_v3.4	9	36,295,592 - 36,295,738	UniSTS	RGSC3.4
RGSC_v3.1	9	36,297,005 - 36,297,152	RGD
Celera	9	37,340,295 - 37,340,441	UniSTS
FHH x ACI Map	9	26.82	RGD
FHH x ACI Map	9	26.82	UniSTS
Cytogenetic Map	9	q21	UniSTS

D9Rat188

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	39,538,347 - 39,538,572 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	43,899,561 - 43,899,785	NCBI	Rnor6.0
Rnor_5.0	9	43,543,203 - 43,543,427	UniSTS	Rnor5.0
RGSC_v3.4	9	36,248,318 - 36,248,543	RGD	RGSC3.4
RGSC_v3.4	9	36,248,319 - 36,248,543	UniSTS	RGSC3.4
RGSC_v3.1	9	36,249,732 - 36,249,957	RGD
Celera	9	37,294,218 - 37,294,442	UniSTS
FHH x ACI Map	9	26.86	RGD
FHH x ACI Map	9	26.86	UniSTS
Cytogenetic Map	9	q21	UniSTS

RH139511

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	39,646,224 - 39,646,408 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	44,006,237 - 44,006,420	NCBI	Rnor6.0
Rnor_5.0	9	43,707,597 - 43,707,780	UniSTS	Rnor5.0
RGSC_v3.4	9	36,356,577 - 36,356,760	UniSTS	RGSC3.4
Celera	9	37,400,522 - 37,400,705	UniSTS
RH 3.4 Map	9	369.7	UniSTS
Cytogenetic Map	9	q21	UniSTS

BF400233

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	39,642,932 - 39,643,140 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	44,003,005 - 44,003,212	NCBI	Rnor6.0
Rnor_5.0	9	43,704,317 - 43,704,524	UniSTS	Rnor5.0
RGSC_v3.4	9	36,353,137 - 36,353,344	UniSTS	RGSC3.4
Celera	9	37,397,198 - 37,397,405	UniSTS
RH 3.4 Map	9	367.8	UniSTS
Cytogenetic Map	9	q21	UniSTS

BF401404

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	39,637,041 - 39,637,286 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	43,997,114 - 43,997,358	NCBI	Rnor6.0
Rnor_5.0	9	43,698,426 - 43,698,670	UniSTS	Rnor5.0
RGSC_v3.4	9	36,347,246 - 36,347,490	UniSTS	RGSC3.4
Celera	9	37,391,307 - 37,391,551	UniSTS
RH 3.4 Map	9	369.2	UniSTS
Cytogenetic Map	9	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039084241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005488971	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC125939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC133270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ205789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB584080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB614071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB758981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB761394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO395558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO397336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U26397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000024330 ⟹ ENSRNOP00000024330

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	39,528,674 - 39,640,164 (+)	Ensembl
Rnor_6.0 Ensembl	9	43,889,473 - 44,004,325 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093887 ⟹ ENSRNOP00000085223

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	39,528,674 - 39,646,581 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096431 ⟹ ENSRNOP00000093364

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	39,528,674 - 39,646,581 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106785 ⟹ ENSRNOP00000087324

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	39,591,765 - 39,646,581 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110836 ⟹ ENSRNOP00000083933

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	39,528,674 - 39,646,581 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116841 ⟹ ENSRNOP00000090042

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	39,528,674 - 39,646,581 (+)	Ensembl

RefSeq Acc Id:

NM_031002 ⟹ NP_112264

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,024,492 - 47,142,391 (+)	NCBI
mRatBN7.2	9	39,528,674 - 39,646,583 (+)	NCBI
Rnor_6.0	9	43,889,887 - 44,006,593 (+)	NCBI
Rnor_5.0	9	43,533,507 - 43,707,953 (+)	NCBI
RGSC_v3.4	9	36,238,645 - 36,356,933 (+)	RGD
Celera	9	37,284,544 - 37,400,878 (+)	RGD

Sequence:

show sequence

CGGGCGGGCTTCTCGGGGAGCTCTGTGATGCTCTACATCGAGCCTGCCGGCAGCATCTCTACTG
GATCCCACAGGCATCCAACGCTGGAGGCCTCGCGGTATCTCGGGTGTCAACACACCGGATGATG
GATCTGTTTGTCCTTCCGTGACGCAATGCCATGTAGTCCAACGGCAAGCATGTATGGGATACTG
CCATTGTAGGGATCCAGGGCCTGGAGACGGCTCTGCTTTGGGGAATCAGGTGAGGTGACCAAGG
AACAAGAAGCATACCCTCACCAATGACATCATGACAGCAAGAGAGCACAGCCCTCGCCATGGTG
CCAGGGCCCGTGCGATGCAGCGGGCTTCCACCATTGACGTGACAGCCGACATGGTGGGCCTCTC
TCTGGCAGGAAACATCCAAGACCCAGATGAGCCCATTTTAGAGTTCAGCTTAGCTTGCAGTGAG
CTTCACACTCCATCGCTAGATCGAAAACCAAATAGTTTTGTGGCTGTGAGTGTCACCACCCCTC
CACAGGCATTCTGGACGAAGCACGCGCAGACGGAGATCATCGAGGGAACCAACAACCCTATCTT
TCTGAGCAGCATTGCCTTCTTTCAAGACTCTCTCATCAATCAGATGACCCAGATCAAGCTGTCA
GTGTACGACGTCAAAGACAGATCTCAGGGAACAATGTACTTGCTGGGCTCTGGAACATTCGTGG
TCAAAGACCTGCTCCAGGACAGGCATCACCGATTGCATCTGACACTGAGGTCTGCAGAGAGTGA
CCGAGTCGGTAACATAACTGTGATCGGCTGGCAGATGGAGGAGAAGTCAGACCAGCAGCCCCCT
GTGACCCGGTCTCTGGACACTGTCAATGGCAGGATGGTTTTGCCCGTTGACGAGAGCTTGACCG
AGGCCTTGGGAATCCGATCCAAATATGCTTCTTTGCGAAAAGACAGCTTACTGAAAGCGGTGTT
TGGTGGTGCCATCTGCCGCATGTACCGCTTCCCAACCACCGATGGCAACCACCTACGGATCCTG
GAGCAGATGGCAGAGAGCGTCCTCTCGCTGCACGTGCCTCGGCAGTTTGTGAAGCTCCTGCTGG
AAGAAGATGCAGCCAGAGTCTGTGAGTTGGAAGAGTTGGGGGAGCTGTCCCCTTGCTGGGAGAG
CCTCCGGCGCCAGATTGTCACCCAGTATCAGACTATTATCCTCACCTACCAGGAGAACCTGACT
GACCTCCATCAGTACAAAGGTCCTTCGTTTAAAGCAAGCAGCTTGAAAGCAGATAAAAAGTTAG
AATTCGTTCCCACAAACCTGCACATACAGAGGATGCGAGTTCAGGACGACGGCGGCTCAGATCA
GAACTACGACGTCGTCACTATTGGAGCCCCAGCAGCACACTGCCAAGGTTTTAAGTCAGGAGGT
CTTCGAAAAAAGCTGCACAAGTTTGAAGAGGCCAAGAAGCACAGTTTTGAGGAGTGTTGTACAT
CTTCTACCTGCCAGTCCATAATCTACATACCACAGGATGTCGTCCGGGCCAAGGAGATCATTGC
TCAGATCAACACCCTGAAAACCCAAGTGAGCTACTATGCAGAACGGCTCTCAAGGGCGGCGAAG
GACAGGTCTGCCACTGGCCTTGAGAGGACTCTCGCCATCTTGGCAGACAAGACTCGGCAGTTGG
TGACTGTCTGTGACTGTAAGCTGTTGGCCAACTCCATCCATGGGCTGAATGCAGCACGGCCTGA
CTACATCGCTTCCAAGGCCTCCCCTACCTCGACTGAGGAGGAGCAGGTGATGCTTCGGAATGAC
CAGGACACCCTCATGGCCAGGTGGGCAGGGAGGAGCAGCCGGTCTTCCCTGCAGGTGGACTGGC
ATGAGGAAGAGTGGGAGAAAGTGTGGCTGAATGTGGACAAGAGCCTGGAGTGCATCATTCAGCG
GGTGGACAAGCTGCTGCAGAAGGAACGTCTGCATGGGGAGGGCGGCGAGGATGTTTTCCCCTGT
TCAAGCACCTGTTCCAGCAAGAAAGATTGCAGCCCCCCTCCTGAAGAGTCCTGTCCAGGTGAGT
GGAGCGAGGCCCTTTACCCTCTGCTGACCACCCTCACAGACTGTGTGGCCATGATGAGCGACAA
GGCCAAGGCAGCCATGGTCTTCCTGCTCATGCAGACAGCTGCCCCCACAATCGCCTCTTACCTC
AGCCTGCAGTATCGCCGTGACGTCGTCTTCTGCCAAACCCTGACCGCCCTCATCTGTGGCTTTA
TCATCAAGCTGAGGAACTGCCTGCACGATGGTGGCTTCCTACGGCAGCTCTATACCATCGGGCT
CCTGGCCCAGTTTGAGAGCCTGCTGAGCACCTATGGAGAGGAGTTGGCCATGTTGGAGGACATG
AGCCTTGGGATCATGGACCTGAGGAATGTGACCTTTAAAGTCACTCAGGCCACTTCGAATGCTT
CTAGTGACATGCTGCCAGTCATCACAGGAAACCGGGATGGCTTTAACGTGCGGATTCCTCTGCC
AGGCCCACTGTTTGACTCTCTCCCCAGAGAGATCCAGAGCGGCATGCTGCTGCGGGTGCAGCCC
GTCCTCTTCAACGTGGGCATCAATGAGCAACAGACACTGGCCGAGAGGTTTGGAGACACATCCC
TACAAGAAGTCATCAATGTGGAGAGCCTGGTGCGGCTGAATTCCTACTTTGAGCAGTTCAAGGA
GGTTTTGCCAGAGGACTGTCTACCTCGATCTCGGAGTCAGACCTGCCTTCCAGAGCTGCTGCGG
TTTCTAGGACAGAATGTCCATGCACGCAAGAATAAGAATGTGGACATCCTCTGGCAAGCTGCTG
AGGTCTGTCGCCGCCTTAATGGGGTCCGATTCACCAGCTGCAAGAGTGCCAAGGACCGCACAGC
CATGTCGGTGACCCTGGAGCAGTGTCTGATCCTGCAGCATGAGCACGGCATGGCCCCGCAGGTC
TTCACACAAGCCCTGGAGTGCATGCGCAGTGAGGGTTGTCGGCGAGAAAACACAATGAAGAATG
TTGGAAGTCGCAAATATGCATTTAACTCCCTGCAGCTGAAGGCCTTCCCCAAGCATTACAGGCC
TCCAGAAGGGACTTACGGAAAAGTTGAGACATGAACACACGGTGTCCTCTAATTAGCTGTCATG
TAATCAATGTGGGTCCCTCTAGTGTCACATACATTCTTCAAGAAGACCTGAAGGATTGGTTTTT
ATTTCTGTGTTTTTAAAGACATGTCACTGGAGAGTCCACGGAGCATGATTTTGTGCTGGAATCT
GTAGGGTTACGTGTGGGTCGATAGCGTGGATAGAAAGCCGCCCTCAACCACAGCTTTCAGTGTA
ACTGTACAGTTAATGTCATAGTTCCTAGAAGATGCCAGCTAGGTCTCATACACTCCAGCAGGCT
TTCTCAAATAGCCACTTAGGCCCTGCTCACCCCCTTTACCTTTCTATTCAGTAACTCACAAGTG
AGCACTGACTTAAAATCTTCTTTCAAAAAGACTGACTATAAAGCAGGAAGTACCTAACCTGTGC
ACTTCAGGTCCCAGGTAGAGCAGCAGGTAGAGCAGCAGGTAGAGCAGCAGGTAGAGCAGCAGGT
AGAGCAGCAGGTAGATTCTGACTCAGTCTGGGGGAGAACCTGCATGCTATGACAGGCTGGTGCT
CGTGGCCCTAAAAGGCACCAAGCTCTGTGAACCGAAAGTGGAAGGAAAGCTTGGTTGGTACACC
AGGAGCTCACACACCTGGACCCACACTGTTCCTCCCCCTCACAAGTCATGGATGAGTGTCTGCT
TAAGATGTAAAGCCAGTATTGAGGTCCTGGACTCTCCCCCCACCCCACCCCCACCCCACCCCAC
CCCCACCCCACCCCACCCCGGATGCTCCGTGTATGTTTAGCCCTACCCACAGGGTGTTTCTCCC
TTTGTTCTCCAGCAGTCAGGACCTTCAATGTGGCTTGTCAGGTGTCTGGATTTAGGGCCAGAGA
GACAGTAGAAACTTAGATATTTTCAAAGTAGATGTTCTTCTGGGAGCTTCGTAATAGTCTTCTA
GAAGACCAATAAATCATGTTTGAATGTCTAGAGAAAGCATCTTAGTTTCTGGTTTGCAATGATG
GTTACGGTCCCCCTTCTGTTTCACGGCTATTGATAAACAGTTGAAACTGTCCCCTACCTTGAGA
GTCTGAGATGAGATTATGGAACAGGGAATGAGGGATTTTGTAGACACTGTAATCTGCTCATCTT
TTACAAGGTGACGGTGAGTCTTGTCTGCACGTGGCAGATTTTTTTTCCTTAGAGATTTATATGT
TTATAAGTTCTGTTCACCGTAATTCTGTTTACATGTTATTTAAAAGGCTGTAAAAAGAAATGTA
TATGAACTGTATTCGTGACACTGATACTAATGACCTGTACCACCATGGGAACTCGTAGGCAAGT
CTAGGTAGTTTTCTTTTGGCTCCTTTAGAAAAACACGTAACAGCTTGGATCTGAGGCATTTGAG
GTATCAATAGGACCAGTCTTGGCAAGAGACAGGGAGGGTGCGGGCATCCCTCTACCCCAGTGTG
CAGACAGCCTCCTGTCTCTGGTGCCTGCTGGGAGGAAGATGTGCCCTGCTAAGGGGTGTGTGCT
CACTGCCCCACCCTCAAGGCAAGGCACTGTGGAAGGTGAGTGGCTAAGCTCTCTTTACCCAACC
CTTCCCTCGGGGTCTGCTCTGCTGGTCTCACATTGTCCTGAAGCCTCAGGCCCTGATCAAAGAT
GGCTGAGTCTCAGTGCGGCGGCTAAGCCTTTTAACTTGTTGTTGGTTCACTTACTCTTAGCTTT
TAGTTTTTGTTCGTTCATTTTTTTCTTATTTTGACATCACTGCCTTTTAAAAATATTTCTTCAG
ATTTTAGAATGAAATGTTTCCCATGTTCTCCAGNGTTCCTTTCTGTCCACAGGGCATTTGACTT
GTCCACAGGGCATTTGACCTGTCCACATTTATAAAGGGAACAGGCGAAGCTGACTTATTTGTCA
GCTTCTGCATGTGAATTCTTGTCTCAGTTTCTGTTTATAATATGAATCACTGTAAAACTCTAAG
ACTTGGCTAATCACGTAAAAGATTGTGGCTTCAGTGTTTTCTCTGAAGGCATTGTGACTGGCTT
CCAGAGCATCACACACGCCCAGAAGGGTCATCTCGCACAGCACAGGCTCAGCAAGCCCTGGGCC
GCTCACAGGAGGCCGAACTGTTCCCTGTGGAGGAAAACAGTTCTACAGCTTTCCAGTGAACAAC
GTTCCGTCCGGCACCTTTCCCCATTTAGGAAGGAATGTGCAGTCTCTGGGCGGTGGGCATGCCG
TGCGGATCCTGTCAGAGCTCCTGCAGCACATCTGCCTTTACTGTCCTTTAAGGATGTATAAATG
CTGTACAGTGCTGTTGTATCTCCCGACACGTGTTTTCGCTCAGCTTAGTGCATTTAAATACTTG
TATTTATTTATTTGTTTGGGACATATTAATATATATGAACATATAGTTACTGTTTTATATATTA
TTAGCTTATTCAAAGCCATGATGCTGTAAATGTGCTTGTCTTTAGAATGATAAATAATAAAAAC
TGACAAGAACATTG

hide sequence

RefSeq Acc Id:

XM_039084224 ⟹ XP_038940152

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,024,064 - 47,137,254 (+)	NCBI
mRatBN7.2	9	39,528,245 - 39,640,174 (+)	NCBI

RefSeq Acc Id:

XM_039084225 ⟹ XP_038940153

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,024,065 - 47,137,254 (+)	NCBI
mRatBN7.2	9	39,528,245 - 39,640,174 (+)	NCBI

RefSeq Acc Id:

XM_039084226 ⟹ XP_038940154

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,024,066 - 47,137,254 (+)	NCBI
mRatBN7.2	9	39,528,245 - 39,640,174 (+)	NCBI

RefSeq Acc Id:

XM_039084228 ⟹ XP_038940156

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,024,066 - 47,137,254 (+)	NCBI
mRatBN7.2	9	39,528,245 - 39,640,174 (+)	NCBI

RefSeq Acc Id:

XM_039084229 ⟹ XP_038940157

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,024,066 - 47,137,254 (+)	NCBI
mRatBN7.2	9	39,528,245 - 39,640,174 (+)	NCBI

RefSeq Acc Id:

XM_039084230 ⟹ XP_038940158

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,024,066 - 47,142,391 (+)	NCBI
mRatBN7.2	9	39,528,245 - 39,646,587 (+)	NCBI

RefSeq Acc Id:

XM_039084233 ⟹ XP_038940161

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,024,064 - 47,142,391 (+)	NCBI
mRatBN7.2	9	39,528,245 - 39,644,056 (+)	NCBI

RefSeq Acc Id:

XM_039084234 ⟹ XP_038940162

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,024,066 - 47,137,254 (+)	NCBI
mRatBN7.2	9	39,528,245 - 39,639,375 (+)	NCBI

RefSeq Acc Id:

XM_039084236 ⟹ XP_038940164

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,024,066 - 47,137,254 (+)	NCBI
mRatBN7.2	9	39,528,245 - 39,639,375 (+)	NCBI

RefSeq Acc Id:

XM_039084238 ⟹ XP_038940166

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,024,066 - 47,142,391 (+)	NCBI
mRatBN7.2	9	39,528,246 - 39,644,755 (+)	NCBI

RefSeq Acc Id:

XM_039084240 ⟹ XP_038940168

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,024,066 - 47,142,391 (+)	NCBI
mRatBN7.2	9	39,528,246 - 39,644,056 (+)	NCBI

RefSeq Acc Id:

XM_039084241 ⟹ XP_038940169

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,024,064 - 47,142,391 (+)	NCBI
mRatBN7.2	9	39,528,246 - 39,644,056 (+)	NCBI

RefSeq Acc Id:

XM_063267766 ⟹ XP_063123836

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,024,064 - 47,142,391 (+)	NCBI

RefSeq Acc Id:

XM_063267768 ⟹ XP_063123838

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,024,064 - 47,137,254 (+)	NCBI

RefSeq Acc Id:

XR_005488970

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,024,066 - 47,120,101 (+)	NCBI
mRatBN7.2	9	39,528,245 - 39,624,291 (+)	NCBI

RefSeq Acc Id:

XR_005488971

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	47,024,066 - 47,120,101 (+)	NCBI
mRatBN7.2	9	39,528,246 - 39,624,291 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_112264	(Get FASTA)	NCBI Sequence Viewer
	XP_038940152	(Get FASTA)	NCBI Sequence Viewer
	XP_038940153	(Get FASTA)	NCBI Sequence Viewer
	XP_038940154	(Get FASTA)	NCBI Sequence Viewer
	XP_038940156	(Get FASTA)	NCBI Sequence Viewer
	XP_038940157	(Get FASTA)	NCBI Sequence Viewer
	XP_038940158	(Get FASTA)	NCBI Sequence Viewer
	XP_038940161	(Get FASTA)	NCBI Sequence Viewer
	XP_038940162	(Get FASTA)	NCBI Sequence Viewer
	XP_038940164	(Get FASTA)	NCBI Sequence Viewer
	XP_038940166	(Get FASTA)	NCBI Sequence Viewer
	XP_038940168	(Get FASTA)	NCBI Sequence Viewer
	XP_038940169	(Get FASTA)	NCBI Sequence Viewer
	XP_063123836	(Get FASTA)	NCBI Sequence Viewer
	XP_063123838	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB01069	(Get FASTA)	NCBI Sequence Viewer
	EDL99243	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000024330.8
	ENSRNOP00000083933.1
	ENSRNOP00000085223.1
	ENSRNOP00000087324.1
	ENSRNOP00000090042.1
	ENSRNOP00000093364.1
GenBank Protein	Q62784	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_112264 ⟸ NM_031002

- UniProtKB:

Q62784 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MTAREHSPRHGARARAMQRASTIDVTADMVGLSLAGNIQDPDEPILEFSLACSELHTPSLDRKP
NSFVAVSVTTPPQAFWTKHAQTEIIEGTNNPIFLSSIAFFQDSLINQMTQIKLSVYDVKDRSQG
TMYLLGSGTFVVKDLLQDRHHRLHLTLRSAESDRVGNITVIGWQMEEKSDQQPPVTRSLDTVNG
RMVLPVDESLTEALGIRSKYASLRKDSLLKAVFGGAICRMYRFPTTDGNHLRILEQMAESVLSL
HVPRQFVKLLLEEDAARVCELEELGELSPCWESLRRQIVTQYQTIILTYQENLTDLHQYKGPSF
KASSLKADKKLEFVPTNLHIQRMRVQDDGGSDQNYDVVTIGAPAAHCQGFKSGGLRKKLHKFEE
AKKHSFEECCTSSTCQSIIYIPQDVVRAKEIIAQINTLKTQVSYYAERLSRAAKDRSATGLERT
LAILADKTRQLVTVCDCKLLANSIHGLNAARPDYIASKASPTSTEEEQVMLRNDQDTLMARWAG
RSSRSSLQVDWHEEEWEKVWLNVDKSLECIIQRVDKLLQKERLHGEGGEDVFPCSSTCSSKKDC
SPPPEESCPGEWSEALYPLLTTLTDCVAMMSDKAKAAMVFLLMQTAAPTIASYLSLQYRRDVVF
CQTLTALICGFIIKLRNCLHDGGFLRQLYTIGLLAQFESLLSTYGEELAMLEDMSLGIMDLRNV
TFKVTQATSNASSDMLPVITGNRDGFNVRIPLPGPLFDSLPREIQSGMLLRVQPVLFNVGINEQ
QTLAERFGDTSLQEVINVESLVRLNSYFEQFKEVLPEDCLPRSRSQTCLPELLRFLGQNVHARK
NKNVDILWQAAEVCRRLNGVRFTSCKSAKDRTAMSVTLEQCLILQHEHGMAPQVFTQALECMRS
EGCRRENTMKNVGSRKYAFNSLQLKAFPKHYRPPEGTYGKVET

hide sequence

Ensembl Acc Id:

ENSRNOP00000024330 ⟸ ENSRNOT00000024330

RefSeq Acc Id:	XP_038940158 ⟸ XM_039084230
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6ACW4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038940161 ⟸ XM_039084233
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZYR7 (UniProtKB/TrEMBL), A0A8I6ACW4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038940154 ⟸ XM_039084226
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ACW4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038940152 ⟸ XM_039084224
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ACW4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038940157 ⟸ XM_039084229
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6ACW4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038940156 ⟸ XM_039084228
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6ACW4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038940153 ⟸ XM_039084225
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ACW4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038940162 ⟸ XM_039084234
- Peptide Label:	isoform X6
- UniProtKB:	Q62784 (UniProtKB/Swiss-Prot), D3ZBL5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038940164 ⟸ XM_039084236
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6A0Y3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038940166 ⟸ XM_039084238
- Peptide Label:	isoform X9
- UniProtKB:	Q62784 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038940168 ⟸ XM_039084240
- Peptide Label:	isoform X10
- UniProtKB:	Q62784 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038940169 ⟸ XM_039084241
- Peptide Label:	isoform X12
- UniProtKB:	A0A8I6A0Y3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000090042 ⟸ ENSRNOT00000116841

Ensembl Acc Id:

ENSRNOP00000087324 ⟸ ENSRNOT00000106785

Ensembl Acc Id:

ENSRNOP00000093364 ⟸ ENSRNOT00000096431

Ensembl Acc Id:

ENSRNOP00000083933 ⟸ ENSRNOT00000110836

Ensembl Acc Id:

ENSRNOP00000085223 ⟸ ENSRNOT00000093887

RefSeq Acc Id:	XP_063123836 ⟸ XM_063267766
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063123838 ⟸ XM_063267768
- Peptide Label:	isoform X11

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62784-F1-model_v2	AlphaFold	Q62784	1-939	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696611

Promoter ID:

EPDNEW_R7136

Type:

multiple initiation site

Name:

Inpp4a_1

Description:

inositol polyphosphate-4-phosphatase type I A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	43,889,486 - 43,889,546	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:68386	AgrOrtholog
BioCyc Gene	G2FUF-27790	BioCyc
BioCyc Pathway	PWY-6368 [3-phosphoinositide degradation]	BioCyc
BioCyc Pathway Image	PWY-6368	BioCyc
Ensembl Genes	ENSRNOG00000017660	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000024330.9	UniProtKB/TrEMBL
	ENSRNOT00000093887.1	UniProtKB/TrEMBL
	ENSRNOT00000096431.1	UniProtKB/TrEMBL
	ENSRNOT00000106785.1	UniProtKB/TrEMBL
	ENSRNOT00000110836.1	UniProtKB/TrEMBL
	ENSRNOT00000116841.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.150	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	C2_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	C2_domain_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	INPP4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:80849	UniProtKB/Swiss-Prot
NCBI Gene	80849	ENTREZGENE
PANTHER	INOSITOL POLYPHOSPHATE-4-PHOSPHATASE TYPE I A	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR12187	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Inpp4a	PhenoGen
PROSITE	PS50004	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017660	RatGTEx
Superfamily-SCOP	SSF49562	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR	TC218390
UniProt	A0A8I5ZYR7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A0Y3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A712_RAT	UniProtKB/TrEMBL
	A0A8I6ACW4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AIL8_RAT	UniProtKB/TrEMBL
	A6ING7_RAT	UniProtKB/TrEMBL
	D3ZBL5	ENTREZGENE, UniProtKB/TrEMBL
	INP4A_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-07-21	Inpp4a	inositol polyphosphate-4-phosphatase type I A	Inpp4a	inositol polyphosphate-4-phosphatase, type I	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-05-03	Inpp4a	inositol polyphosphate-4-phosphatase, type I	Inpp4a	inositol polyphosphate-4-phosphatase, type 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-06-10	Inpp4a	inositol polyphosphate-4-phosphatase, type 1			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in brain, heart, skeletal muscle, and spleen	68266
gene_protein	939 amino acids	68266

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

BioCyc Pathways