INPP4A (inositol polyphosphate-4-phosphatase type I A) - Rat Genome Database

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Gene: INPP4A (inositol polyphosphate-4-phosphatase type I A) Sus scrofa
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Symbol: INPP4A
Name: inositol polyphosphate-4-phosphatase type I A
RGD ID: 14045782
Description: ENCODES a protein that exhibits phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity (inferred); INVOLVED IN regulation of postsynaptic membrane neurotransmitter receptor levels (ortholog); PARTICIPATES IN inositol metabolic pathway; inositol phosphate metabolic pathway; ASSOCIATED WITH autosomal dominant dyskeratosis congenita 1 (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: inositol polyphosphate-4-phosphatase, type I, 107kDa; type I inositol 3,4-bisphosphate 4-phosphatase; type I inositol-3,4-bisphosphate 4-phosphatase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl355,711,031 - 55,834,367 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1355,711,025 - 55,779,579 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2358,266,124 - 58,307,943 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:19397514   PMID:30032202  


Genomics

Comparative Map Data
INPP4A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl355,711,031 - 55,834,367 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1355,711,025 - 55,779,579 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2358,266,124 - 58,307,943 (-)NCBISscrofa10.2Sscrofa10.2susScr3
INPP4A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38298,444,587 - 98,594,392 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl298,444,854 - 98,594,392 (+)EnsemblGRCh38hg38GRCh38
GRCh37299,061,050 - 99,210,855 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36298,501,857 - 98,570,614 (+)NCBINCBI36Build 36hg18NCBI36
Build 34298,519,930 - 98,662,684NCBI
Celera293,265,040 - 93,411,219 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef292,826,490 - 92,972,083 (+)NCBIHuRef
CHM1_1299,065,634 - 99,211,815 (+)NCBICHM1_1
T2T-CHM13v2.0298,902,886 - 99,052,718 (+)NCBIT2T-CHM13v2.0
Inpp4a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,338,908 - 37,449,821 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,338,946 - 37,449,817 (+)EnsemblGRCm39 Ensembl
GRCm38137,299,827 - 37,410,740 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,299,865 - 37,410,736 (+)EnsemblGRCm38mm10GRCm38
MGSCv37137,356,738 - 37,467,581 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36137,302,465 - 37,352,805 (+)NCBIMGSCv36mm8
Celera137,079,390 - 37,192,754 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.46NCBI
Inpp4a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8947,024,064 - 47,142,391 (+)NCBIGRCr8
mRatBN7.2939,528,245 - 39,650,574 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl939,528,674 - 39,646,581 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx948,024,733 - 48,142,652 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0953,147,494 - 53,265,400 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0951,429,369 - 51,547,271 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0943,889,887 - 44,006,593 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl943,889,473 - 44,004,325 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0943,533,507 - 43,707,953 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4936,238,645 - 36,356,933 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1936,240,058 - 36,358,347 (+)NCBI
Celera937,284,544 - 37,400,878 (+)NCBICelera
Cytogenetic Map9q21NCBI
Inpp4a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554704,930,568 - 5,040,383 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554704,930,568 - 5,040,153 (+)NCBIChiLan1.0ChiLan1.0
INPP4A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21229,853,793 - 29,999,903 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A29,857,185 - 30,002,660 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,720,587 - 100,867,228 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A99,355,307 - 99,499,350 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A99,428,904 - 99,499,350 (+)Ensemblpanpan1.1panPan2
INPP4A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11044,086,533 - 44,221,225 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1044,089,025 - 44,145,506 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1044,008,800 - 44,143,763 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01044,959,356 - 45,094,368 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1044,959,356 - 45,094,231 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11044,669,735 - 44,804,682 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01044,960,705 - 45,095,469 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01045,136,428 - 45,271,376 (-)NCBIUU_Cfam_GSD_1.0
Inpp4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629284,307,312 - 84,439,129 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367441,629,438 - 1,693,141 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367441,629,432 - 1,692,069 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INPP4A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,161,649 - 2,306,023 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,235,510 - 2,302,858 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041169,681,423 - 169,826,862 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Inpp4a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247493,574,625 - 3,632,581 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247493,508,135 - 3,632,581 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in INPP4A
1527 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 5 2 3 4 23 1 2
Low 5 2 1 2 2 2 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000008969   ⟹   ENSSSCP00000008743
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl355,711,034 - 55,834,358 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000070168   ⟹   ENSSSCP00000071693
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl355,715,219 - 55,834,358 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000085463   ⟹   ENSSSCP00000064578
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl355,711,031 - 55,834,350 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000087935   ⟹   ENSSSCP00000067720
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl355,711,031 - 55,834,367 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000103289   ⟹   ENSSSCP00000075691
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl355,715,217 - 55,834,361 (-)Ensembl
RefSeq Acc Id: NM_001143930   ⟹   NP_001137402
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1355,713,532 - 55,760,365 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021085602   ⟹   XP_020941261
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1355,711,025 - 55,779,579 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020941261   ⟸   XM_021085602
- Peptide Label: isoform X1
- UniProtKB: A0A5G2R3C2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001137402   ⟸   NM_001143930
- UniProtKB: B8R0Y5 (UniProtKB/TrEMBL),   A0A8D0PU73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000071693   ⟸   ENSSSCT00000070168
RefSeq Acc Id: ENSSSCP00000064578   ⟸   ENSSSCT00000085463
RefSeq Acc Id: ENSSSCP00000067720   ⟸   ENSSSCT00000087935
RefSeq Acc Id: ENSSSCP00000008743   ⟸   ENSSSCT00000008969
RefSeq Acc Id: ENSSSCP00000075691   ⟸   ENSSSCT00000103289
Protein Domains
C2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008190 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015066425 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000008969.5 UniProtKB/TrEMBL
  ENSSSCT00000070168 ENTREZGENE
  ENSSSCT00000070168.2 UniProtKB/TrEMBL
  ENSSSCT00000085463 ENTREZGENE
  ENSSSCT00000085463.2 UniProtKB/TrEMBL
  ENSSSCT00000087935.2 UniProtKB/TrEMBL
  ENSSSCT00000103289.1 UniProtKB/TrEMBL
  ENSSSCT00015089502.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  INPP4 UniProtKB/TrEMBL
KEGG Report ssc:100233232 UniProtKB/TrEMBL
NCBI Gene INPP4A ENTREZGENE
PANTHER INOSITOL POLYPHOSPHATE-4-PHOSPHATASE TYPE I A UniProtKB/TrEMBL
  PTHR12187 UniProtKB/TrEMBL
PROSITE PS50004 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt A0A5G2QS20_PIG UniProtKB/TrEMBL
  A0A5G2R222_PIG UniProtKB/TrEMBL
  A0A5G2R3C2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PU73 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FBL8_PIG UniProtKB/TrEMBL
  B8R0Y5 ENTREZGENE, UniProtKB/TrEMBL
  F1STD8_PIG UniProtKB/TrEMBL
VGNC ID VGNC:89140 ENTREZGENE