Myo1d (myosin ID) - Rat Genome Database

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Gene: Myo1d (myosin ID) Rattus norvegicus

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Symbol:

Myo1d

Name:

myosin ID

RGD ID:

621321

Description:

Enables several functions, including actin filament binding activity; calcium-dependent protein binding activity; and calmodulin binding activity. Involved in forebrain development. Located in several cellular components, including apical dendrite; axolemma; and basolateral plasma membrane. Part of myosin complex. Orthologous to human MYO1D (myosin ID); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MGC93573; Myo1c; myosin 1C; myosin heavy chain myr 4; myosin IC; myosin-Id; myosin1C; Myr2; Myr4; Unconventional myosin from rat 4 for myosin I heavy chain; unconventional myosin-Id

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MYO1D (myosin ID)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Myo1d (myosin ID)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Myo1d (myosin ID)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MYO1D (myosin ID)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MYO1D (myosin ID)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Myo1d (myosin ID)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MYO1D (myosin ID)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MYO1D (myosin ID)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Myo1d (myosin ID)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PSMD2 (proteasome 26S subunit ubiquitin receptor, non-ATPase 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	MYO1D (myosin ID)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Myo1d (myosin ID)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	myo1d (myosin 1D)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Myo31DF	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	hum-5	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	myo1d	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Allele / Splice:

Myo1d^{Tn(sb-T2/Bart3)2.334Mcwi}

Genetic Models:

F344-Myo1d^{Tn(sb-T2/Bart3)2.334Mcwi}

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	65,986,900 - 66,263,538 (-)	NCBI		GRCr8
mRatBN7.2	10	65,489,153 - 65,765,812 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	65,489,154 - 65,766,349 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	70,117,073 - 70,393,698 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	69,622,393 - 69,899,014 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	65,084,076 - 65,360,306 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	67,866,939 - 68,142,864 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	67,866,940 - 68,142,864 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	67,520,649 - 67,811,744 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	68,720,729 - 68,997,721 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	64,447,472 - 64,723,456 (-)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-butoxyethanol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-methylcholanthrene (ISO)

3-Nitrobenzanthrone (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole (EXP)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amiodarone (EXP)

amitrole (EXP)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzbromarone (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

calcitriol (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

cisplatin (ISO)

clofibrate (EXP)

cobalt dichloride (EXP,ISO)

Cuprizon (EXP)

cycloheximide (ISO)

dexamethasone (ISO)

diethylstilbestrol (ISO)

dioxygen (ISO)

diuron (EXP)

dorsomorphin (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

flavonoids (EXP)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

genistein (ISO)

gentamycin (EXP)

glafenine (EXP)

glycidol (EXP)

indometacin (ISO)

inulin (ISO)

L-ethionine (EXP)

mercury dibromide (ISO)

methyl methanesulfonate (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosomorpholine (EXP)

nefazodone (EXP)

nimesulide (EXP)

omeprazole (EXP)

oxaliplatin (EXP)

ozone (ISO)

panobinostat (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (EXP,ISO)

profenofos (EXP)

propiconazole (EXP)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sulforaphane (ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

thapsigargin (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP,ISO)

triadimefon (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament organization (IBA)

actin filament-based movement (IBA)

early endosome to recycling endosome transport (ISO)

endocytosis (IBA)

forebrain development (IEP)

protein transport (IEA)

Cellular Component

actin cytoskeleton (IBA)

apical dendrite (IDA)

axolemma (IDA)

axon (IEA,ISO)

basolateral plasma membrane (IDA)

brush border (IDA,IEA,ISO)

cell cortex (IEA)

cytoplasm (IBA)

cytoplasmic vesicle (IDA)

dendrite (IEA)

early endosome (IEA)

endosome (ISO)

microvillus (IBA)

myelin sheath (IDA,IEA,ISO,ISS)

myosin complex (IDA,IEA)

neuron projection (ISO)

neuronal cell body (IDA,ISO)

perikaryon (IEA)

plasma membrane (IBA)

plasma membrane raft (IDA)

Molecular Function

actin binding (IEA)

actin filament binding (IBA,IDA)

ATP binding (IEA)

calcium-dependent protein binding (IDA)

calmodulin binding (IDA,IEA,IMP)

cytoskeletal motor activity (IEA)

microfilament motor activity (IBA,IDA)

protein binding (ISO)

protein domain specific binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat myr 4 defines a novel subclass of myosin I: identification, distribution, localization, and mapping of calmodulin-binding sites with differential calcium sensitivity.	Bahler M, etal., J Cell Biol 1994 Jul;126(2):375-89.
2.	Differential localization and dynamics of class I myosins in the enterocyte microvillus.	Benesh AE, etal., Mol Biol Cell. 2010 Mar 15;21(6):970-8. doi: 10.1091/mbc.E09-07-0638. Epub 2010 Jan 20.
3.	Myosin-I isozymes in neonatal rodent auditory and vestibular epithelia.	Dumont RA, etal., J Assoc Res Otolaryngol 2002 Dec;3(4):375-89. Epub 2002 Feb 27.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	The two IQ-motifs and Ca2+/calmodulin regulate the rat myosin 1d ATPase activity.	Kohler D, etal., FEBS J. 2005 May;272(9):2189-97.
6.	Different degrees of lever arm rotation control myosin step size.	Kohler D, etal., J Cell Biol. 2003 Apr 28;161(2):237-41.
7.	Axonal isoforms of myosin-I.	Lund LM, etal., Biochem Biophys Res Commun. 2005 May 13;330(3):857-64.
8.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
9.	GOA pipeline	RGD automated data pipeline
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Comprehensive gene review and curation	RGD comprehensive gene curation
13.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
14.	Two-dimensional electrophoresis with cationic detergents: a powerful tool for the proteomic analysis of myelin proteins. Part 2: analytical aspects.	Yamaguchi Y, etal., J Neurosci Res. 2008 Mar;86(4):766-75.

Additional References at PubMed

PMID:11208135	PMID:12477932	PMID:15014434	PMID:15489334	PMID:17634366	PMID:19056867	PMID:19199708	PMID:19389623	PMID:20039646	PMID:21330445	PMID:22114352	PMID:22284616
PMID:22871113	PMID:23376485	PMID:23533145	PMID:24625528	PMID:24903835	PMID:29476059

Genomics

Comparative Map Data

Myo1d
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	65,986,900 - 66,263,538 (-)	NCBI		GRCr8
mRatBN7.2	10	65,489,153 - 65,765,812 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	65,489,154 - 65,766,349 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	70,117,073 - 70,393,698 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	69,622,393 - 69,899,014 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	65,084,076 - 65,360,306 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	67,866,939 - 68,142,864 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	67,866,940 - 68,142,864 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	67,520,649 - 67,811,744 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	68,720,729 - 68,997,721 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	64,447,472 - 64,723,456 (-)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

MYO1D
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	32,492,522 - 32,877,124 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	32,492,522 - 32,877,177 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	30,819,540 - 31,204,142 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	27,843,741 - 28,228,015 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	27,843,740 - 28,228,015	NCBI
Celera	17	27,729,830 - 28,114,502 (-)	NCBI		Celera
Cytogenetic Map	17	q11.2	NCBI
HuRef	17	27,005,843 - 27,390,754 (-)	NCBI		HuRef
CHM1_1	17	30,882,090 - 31,266,671 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	33,438,289 - 33,823,203 (-)	NCBI		T2T-CHM13v2.0

Myo1d
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	80,372,945 - 80,670,881 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	80,372,952 - 80,670,851 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	80,482,126 - 80,780,055 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	80,482,126 - 80,780,025 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	80,295,629 - 80,593,527 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	80,400,022 - 80,596,220 (-)	NCBI		MGSCv36	mm8
Celera	11	90,120,134 - 90,418,853 (-)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI
cM Map	11	47.95	NCBI

Myo1d
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	7,413,211 - 7,752,198 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	7,413,211 - 7,752,198 (-)	NCBI	ChiLan1.0	ChiLan1.0

MYO1D
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	31,581,486 - 31,964,509 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	33,462,675 - 33,845,563 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	23,900,814 - 24,283,721 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	24,287,194 - 24,574,209 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	24,284,959 - 24,572,183 (+)	Ensembl	panpan1.1		panPan2

MYO1D
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	40,171,426 - 40,497,556 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	40,171,158 - 40,496,210 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	39,330,493 - 39,656,452 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	40,987,302 - 41,313,614 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	40,986,996 - 41,313,603 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	39,773,164 - 40,099,782 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	40,067,715 - 40,393,998 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	40,142,489 - 40,468,690 (+)	NCBI		UU_Cfam_GSD_1.0

Myo1d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	39,224,247 - 39,531,010 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936538	2,102,186 - 2,408,954 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936538	2,102,192 - 2,408,953 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MYO1D
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	42,120,368 - 42,489,194 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	42,120,373 - 42,489,191 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	43,931,996 - 44,248,454 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MYO1D
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	26,050,272 - 26,425,568 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	26,049,861 - 26,425,455 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	3,614,758 - 3,993,139 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Myo1d
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624875	543,260 - 877,953 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624875	544,065 - 877,958 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Myo1d
1612 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	238
Count of miRNA genes:	151
Interacting mature miRNAs:	169
Transcripts:	ENSRNOT00000004609
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	50574707	95574707	Rat
152025229	Scl83	Serum cholesterol level QTL 83	4.33		blood cholesterol amount (VT:0000180)		10	35710580	68663659	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31297439	76297439	Rat
152025227	Bw195	Body weight QTL 195	5.73		body mass (VT:0001259)		10	46989699	68663659	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	49444551	81709989	Rat
152025224	Bw193	Body weight QTL 193	6.47		body mass (VT:0001259)		10	51663405	75085664	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	41142633	86142633	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	30632053	75632053	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	49444551	81709989	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	57576521	102576521	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	53797494	98952626	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41333258	86333258	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44441699	89441699	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45029650	95600334	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28453136	73453136	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	26944628	71944628	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42323132	87323132	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44441699	89441699	Rat
10402859	Bp381	Blood pressure QTL 381		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	49444551	81709989	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42323132	87323132	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61345276	98211570	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	51772940	96772940	Rat
2306787	Ean3	Experimental allergic neuritis QTL 3	3.1		nervous system integrity trait (VT:0010566)	body weight loss (CMO:0001399)	10	53797385	66979128	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	64890616	107211142	Rat
2312672	Insul15	Insulin level QTL 15		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	10	57134272	102134272	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	37565079	82565079	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	37565079	82565079	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61345276	81714865	Rat
61402	Niddm3	Non-insulin dependent diabetes mellitus QTL 3	4.58		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	61345413	82564856	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
70364	Bp72	Blood pressure QTL 72			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	51121100	96121100	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	59209888	104209888	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	51774612	95600334	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	54809292	99809292	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61345276	99703528	Rat
631535	Cm51	Cardiac mass QTL 51	3		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	51786282	91669536	Rat
1576319	Cia29	Collagen induced arthritis QTL 29			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	33973921	78973921	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	41944526	78307017	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	49444551	81709989	Rat
1331839	Eae18b	Experimental allergic encephalomyelitis QTL 18b	5.8	0.03	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	61248303	67785171	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49444551	81709989	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31224026	75632053	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44441699	89441699	Rat
631526	Bp76	Blood pressure QTL 76		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	61345413	66743655	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61345276	99703528	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47369470	92369470	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
2312662	Slep8	Serum leptin concentration QTL 8		0.05	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	10	57134272	102134272	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	42876766	79813922	Rat
2292441	Bp308	Blood pressure QTL 308			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
2312668	Scl65	Serum cholesterol level QTL 65		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	57134272	102134272	Rat

Markers in Region

D10Rat29

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	66,108,698 - 66,108,888 (+)	Marker Load Pipeline
Rnor_6.0	10	67,988,035 - 67,988,218	NCBI	Rnor6.0
Rnor_5.0	10	67,642,121 - 67,642,304	UniSTS	Rnor5.0
RGSC_v3.4	10	68,842,878 - 68,843,272	RGD	RGSC3.4
RGSC_v3.4	10	68,842,891 - 68,843,074	UniSTS	RGSC3.4
RGSC_v3.1	10	68,856,501 - 68,856,895	RGD
Celera	10	64,569,293 - 64,569,476	UniSTS
RH 2.0 Map	10	657.7	RGD
SHRSP x BN Map	10	46.5699	RGD
FHH x ACI Map	10	53.73	RGD
Cytogenetic Map	10	q26	UniSTS

D10Chm124

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	10	68,135,192 - 68,135,379	NCBI	Rnor6.0
Rnor_5.0	10	67,804,072 - 67,804,259	UniSTS	Rnor5.0
RGSC_v3.4	10	68,990,048 - 68,990,235	UniSTS	RGSC3.4
Cytogenetic Map	10	q26	UniSTS

RH128556

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	65,489,302 - 65,489,519 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	67,867,089 - 67,867,305	NCBI	Rnor6.0
Rnor_5.0	10	67,520,799 - 67,521,015	UniSTS	Rnor5.0
RGSC_v3.4	10	68,720,879 - 68,721,095	UniSTS	RGSC3.4
Celera	10	64,447,622 - 64,447,838	UniSTS
Cytogenetic Map	10	q26	UniSTS

BF386417

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	66,000,671 - 66,000,828 (+)	Marker Load Pipeline
mRatBN7.2	10	65,502,924 - 65,503,081 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	67,880,711 - 67,880,867	NCBI	Rnor6.0
Rnor_5.0	10	67,534,564 - 67,534,720	UniSTS	Rnor5.0
RGSC_v3.4	10	68,734,823 - 68,734,979	UniSTS	RGSC3.4
Celera	10	64,461,236 - 64,461,392	UniSTS
Cytogenetic Map	10	q26	UniSTS

BI292081

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	65,740,839 - 65,741,036 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	68,117,901 - 68,118,097	NCBI	Rnor6.0
Rnor_5.0	10	67,786,781 - 67,786,977	UniSTS	Rnor5.0
RGSC_v3.4	10	68,972,757 - 68,972,953	UniSTS	RGSC3.4
Celera	10	64,698,561 - 64,698,757	UniSTS
Cytogenetic Map	10	q26	UniSTS

BI274510

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	65,723,927 - 65,724,022 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	68,100,990 - 68,101,084	NCBI	Rnor6.0
Rnor_5.0	10	67,769,870 - 67,769,964	UniSTS	Rnor5.0
RGSC_v3.4	10	68,955,846 - 68,955,940	UniSTS	RGSC3.4
Celera	10	64,681,651 - 64,681,745	UniSTS
Cytogenetic Map	10	q26	UniSTS

Genetic Models

This gene Myo1d is modified in the following models/strains:

F344-Myo1d^{Tn(sb-T2/Bart3)2.334Mcwi}

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_012983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123159	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC123340	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X71997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004609 ⟹ ENSRNOP00000004609

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	65,489,154 - 65,765,812 (-)	Ensembl
Rnor_6.0 Ensembl	10	67,866,940 - 68,142,864 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108255 ⟹ ENSRNOP00000091463

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	65,489,154 - 65,766,349 (-)	Ensembl

RefSeq Acc Id:

NM_012983 ⟹ NP_037115

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	65,986,900 - 66,263,538 (-)	NCBI
mRatBN7.2	10	65,489,153 - 65,765,812 (-)	NCBI
Rnor_6.0	10	67,866,939 - 68,142,864 (-)	NCBI
Rnor_5.0	10	67,520,649 - 67,811,744 (-)	NCBI
RGSC_v3.4	10	68,720,729 - 68,997,721 (-)	RGD
Celera	10	64,447,472 - 64,723,456 (-)	RGD

Sequence:

show sequence

CACCCCTCAGCCACCGCGGGAGGAGCGGAAGCCGCCGGCCTCGCCCGTTCAGAGCTACGCGGGC
CGGAGCTCTGAGGAGTGGCGGCCGTCTATCTCCGGCCCGACCCCGTCCGAGCACCCCCGCCCCA
GCCCGAGTGCCCACCTGAGCCGGCGCCATGGCGGAGCAGGAGAGCCTTGAGTTTGGCAAGGCGG
ACTTCGTGCTGATGGACACCGTCTCCATGCCCGAGTTCATGGCCAACCTTAGGCTCAGATTTGA
GAAAGGACGCATCTATACATTCATTGGCGAGGTGGTCGTTTCCGTGAACCCATACAAGGTGCTG
AACATCTATGGAAGGGACACAATTGAGCAGTACAAAGGTCGGGAGCTGTACGAGAGACCTCCTC
ATCTCTTCGCTATTGCTGACGCTGCTTACAAGGCTATGAAGAGGCGATCAAAAGACACCTGTAT
TATGATATCAGGGGAAAGTGGAGCTGGTAAAACAGAGGCCAGTAAGTACATCATGCAGTATATC
GCCGCCATCACCAACCCCAGCCAGAGAGCAGAGATAGAAAGAGTGAAGAATATGTTGCTGAAGT
CAAACTGTGTTTTGGAAGCTTTTGGAAATGCCAAAACCAATCGCAATGACAATTCCAGCAGGTT
TGGGAAATACATGGATATCAACTTTGACTTCAAGGGAGACCCCATTGGGGGACATATTAATAAC
TACTTGCTGGAAAAGTCTCGTGTAATTGTGCAACAGCCCGGAGAACGAAGCTTCCATTCTTTCT
ATCAGCTACTTCAGGGAGGTTCCGAGCAGATGCTGCATTCTCTACATCTGCAGAAATCACTCTC
ATCCTACAACTACATCCGTGTGGGGGCACAACTGAAGTCTTCCATCAATGATGCTGCAGAGTTC
AAAGTTGTAGCTGATGCCATGAAAGTAATTGGATTCAAACCTGAGGAGATTCAAACAGTGTATA
AAATTCTGGCTGCTATTCTTCACTTGGGAAATTTAAAATTTATAGTAGATGGTGACACGCCACT
TATTGAGAATGGCAAAGTTGTATCTGTCATAGCAGAATTGCTCTCAACCAAGGCAGACATGGTG
GAGAAAGCCCTGCTTTACCGGACGGTGGCCACAGGCCGTGACATCATTGACAAACAGCACACGG
AACAGGAGGCTAGCTACGGCAGAGACGCCTTTGCCAAGGCAATATATGAGCGCCTCTTTTGTTG
GATTGTTACTCGCATCAATGACATCATCGAGGTCAAGAACTACGACACCACAGTACATGGGAAA
AACACAGTTATTGGCGTCTTGGATATCTATGGCTTTGAAATCTTTGACAACAACAGCTTCGAGC
AGTTCTGCATTAACTACTGCAATGAGAAGCTGCAGCAGCTGTTCATTCAGCTGGTGCTGAAGCA
GGAGCAAGAGGAGTACCAGCGGGAAGGAATCCCCTGGAAACACATTGATTACTTCAACAACCAG
ATCATTGTGGACCTCGTGGAGCAGCAGCACAAAGGCATCATTGCAATCCTGGATGACGCGTGTA
TGAATGTTGGCAAAGTCACTGATGGAATGTTCCTCGAGGCCCTTAACAGTAAATTGGGCAAACA
TGGTCATTTTTCCAGCCGAAAGACCTGTGCCTCAGACAAAATCCTGGAGTTTGATCGGGACTTT
CGAATCCGGCATTATGCAGGTGATGTCGTGTATTCTGTCATCGGTTTCATTGACAAAAACAAAG
ATACTTTATTTCAAGACTTCAAGCGCCTCATGTATAACAGCTCAAATCCTGTGCTGAAGAACAT
GTGGCCGGAAGGCAAACTGAGCATTACAGAGGTGACCAAGAGGCCTCTGACCGCCGCCACCCTG
TTTAAGAATTCCATGATTGCTTTAGTAGACAACCTTGCTTCAAAGGAGCCATACTATGTACGTT
GCATCAAACCCAACGACAAGAAGTCCCCACAGATTTTTGATGATGAGCGCTGCCGCCATCAGGT
AGAATACCTGGGACTCCTGGAAAATGTGAGAGTGCGCCGGGCAGGGTTTGCCTTCCGCCAGACC
TATGAGAAGTTTCTTCACAGATACAAGATGATCTCTGAGTTCACCTGGCCTAACCACGACCTTC
CTTCAGACAAGGAGGCTGTCAAGAAACTCATAGAGCGATGTGGCTTTCAGGATGACGTAGCATA
TGGGAAGACCAAAATTTTCATTCGAACACCCCGTACGCTGTTCACTTTGGAAGAACTCCGCGCC
CAGATGCTCGTCAGGGTTGTCCTCTTCCTACAAAAGGTGTGGCGTGGCACCCTGGCCCGCATGC
GGTACAAGAGGACCAAGGCAGCTCTGACAATAATCAGGTACTACCGGCGCTATAAAGTGAAGTC
GTACATCCACGAGGTAGCCAGGCGATTCCACGGGGTCAAGAACATGAGAGACTACGGGAAGCAC
GTGAAGTGGCCAACCCCACCCAAAGTCCTGCGGCGTTTTGAGGAGGCCCTGCAGTCGATTTTTA
ATAGATGGAGAGCATCCCAACTCATCAAGACCATACCTGCATCAGACCTTCCCCAGGTCAGGGC
AAAGGTTGCAGCCATGGAGATGTTGAAAGGTCAAAGGGCAGACCTTGGGCTCCAGAGGGCCTGG
GAAGGCAACTATCTTGCTTCAAAGCCAGATACACCTCAGACCTCGGGCACTTTCGTCCCAGTTG
CTAATGAGCTGAAACGCAAGGACAAATATATGAATGTTCTCTTTTCCTGTCATGTCCGAAAGGT
GAATCGATTTAGTAAGGTAGAAGACCGAGCAATTTTTGTCACTGACCGTCACCTGTATAAAATG
GACCCCACTAAGCAGTACAAGGTGATGAAGACCATCCCACTGTACAATTTGACTGGCCTGAGTG
TGTCCAATGGAAAGGACCAGCTTGTAGTGTTCCACACAAAAGACAACAAAGACCTCATCGTCTG
CCTCTTCAGCAAACAGCCGACCCATGAGAGCCGGATTGGAGAACTTGTTGGAGTCCTGGTGAAT
CATTTCAAGAGTGAGAAGCGCCACCTTCAAGTGAACGTCACCAACCCGGTGCAGTGCAGCCTGC
ATGGGAAGAAATGCACCGTATCCGTGGAGACCCGGCTTAACCAGCCACAGCCTGACTTCACCAA
GAACCGCTCCGGCTTCATCCTCAGTGTGCCCGGGAATTGACTGCTGCACACCGGAGGCCTGGCC
CAGGGGAGCAAGAGCCTGGGCCTGGCACACAGCAGGCCAGGTCCTCGGCCTCGCCATCCCCACA
TCTGTTCCACCTCGCTCAACATCCCAGGAGCTCGGCTAATCGCTGTTTGCCCTCTAATGCCACT
AGAAATCAGCTTGCAAGGGCCTCCGCTGGGCAGGACTCCTCTGCCTTTTCTGTGGCCCTGCTCA
TGACCTGTCCTACCTGGCTTTCTGCCTCTGCCCTGCCTCTGCTCTCTCAACTTTCCATACTCCC
TGCTCAGGAAACCAAAGACCCTCTTCAGCCTGCTGGGCTGACAGCTAGACCACTTCCCACCCCA
AGCGACTGGATGGCTCCTGTAGTTGGCAGGAGTGCAGTGGCCACTGCTGACCCCAGCAGAGGGA
TGAGAGGCCCGGAGCCCAGGACGCAGTTTCTGGATCCAAAGCCACATTATCTTAGAGGTTTGGA
TCCAGCATCCGTGGGCAGAGGGATTGGCCCTGCTTTGTGACCCCTACCTGATGCCTCCTTCCAC
AACATGATTGCAGCCCTTAGAACCTAGCTCAGAGCCCCTCAGCACAAGCCCCGCCCCCAGCAGC
CAGCCAAAGCCACTGGGTGAGCGGGTACATCTGCGGAGCCCATCCCTCAGCCTCGATCAACCAG
GATCCCTCCTTCCCAGAGCCTGTCCCTGGGAGAGCTTTTGCCACCAAGGTTCTAGCCCTGGACT
TTCTAACCACTTCTCTCATGGAGACACCCTGCTGCTACTCCAAGGACCAGTTTGCTTAACTCAC
AGCCCACATCCATGGTCATCTTAACCTTCTTTCCTGCAGATTGCCAGGTTGCTAATCTGCTGTC
CCCTCTGCTGTAAGCACAGTGTCAGGACCTAGTGAGGAGGTACAAGGAGCAGGCCGTGCTTGGA
GTGCCCATTCCCCCTAACCCTCTGGCTGCGCCTCCTCCTCACTGGAGACCCGGAACTCTGAGAG
AGCCAAAGCACACAGGACCCAGCAGTGTGGGTTAGACAAAGCTGCAGCTAAGATCGGGGAGTCC
TGGCACTGCAGGCCAGGCCAGGGTCCCCACCTAAGCCACATAATCTGCCTGCCGGAGCCTGGCC
CCCGAGCCCCCTCCTGGGAAAGTGCTGCCCATTTGCCAGTGTCTGCCCAGGAGGAAGGGCATCT
GCTTCAGAGGCCTTCCTGAGACCCCTGCTCCCAGCCTCAGCTGGTAAGGCCTCTGGGTGGCACA
GGCTTGCTGTGGGGAAGCCCAACACGGAAAGTTTGCAAGAGGCGAGAGGTTTGTAGGAGGCGAG
CGAGCCACAGCGCTTTCAGAGCCAGGCTCACATTTTCTTCACTTTTGACCCGACTCTGCTCCCT
AATTCTCACCCTGCCACCCTAACCCACCAAGTGCCTATGCGCTACCTCCTGTGCCTTGGCCCGG
GCCTGAGGGAGTCACCTGGCTGGCCACGGTGGTTCCAGCACCTGGTCTCCTAACCCTTTTGCAG
AGCTGTGGGGACAGGGACGTTTACACTGCAGGCAGTTTGCAACAAAACTCCTGTTGCCATGCTG
CCCTCGAGAGGCGTTCTCATCCCCCAAGCCTGGTGAGCTGCCAGTTGTGCGGACCTGACGGAGC
CACGTGACTGGAACCACGTGACTGGAACCACGTGACTGGAACTTCACCTTCCCACCCCACTTAC
CGCCCCAGCGTGTTGCGTTACACTAGACATGCTAAGTGTGTTCATACACACCAAAGCAGTTATG
CCAAAAGAGTCGCGGGTCAGAAGGGATGGCTCCCCTCCCACCCTCTGATGTAGTCTGGGACCCC
TGGCCCAGGCCAGCACCTCCCACTGAGGGCTGCCCTGTCCACGAGCACTTTCTTATGTCCTAAA
AGTCAGCGTGTGGCCACTGAAGGACCTGGAATTAGAGGTGTGGATGATCACAGTAAGAGCTCGG
GAGAGGACACAGTGATTGTATGCATGGAGTAGGGGTCTCTTGAGTTCATGAAATGCAGTTTATG
GTTTGGTGCATATATTCCTATTTTCCATTAAATTAACTTTATTTCTAAAGCATATTTTGATTTA
CCATCAAGAGCAATAAAGCATTAAATCTTAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_063268468 ⟹ XP_063124538

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	65,986,900 - 66,211,912 (-)	NCBI

RefSeq Acc Id:

XM_063268469 ⟹ XP_063124539

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	65,986,900 - 66,250,282 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_037115	(Get FASTA)	NCBI Sequence Viewer
	XP_063124538	(Get FASTA)	NCBI Sequence Viewer
	XP_063124539	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87027	(Get FASTA)	NCBI Sequence Viewer
	CAA50871	(Get FASTA)	NCBI Sequence Viewer
	EDM05426	(Get FASTA)	NCBI Sequence Viewer
	EDM05427	(Get FASTA)	NCBI Sequence Viewer
	EDM05428	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004609.3
	ENSRNOP00000091463.1
GenBank Protein	Q63357	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_037115 ⟸ NM_012983

- UniProtKB:

Q5PQU2 (UniProtKB/Swiss-Prot), Q63357 (UniProtKB/Swiss-Prot), A6HHC1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAEQESLEFGKADFVLMDTVSMPEFMANLRLRFEKGRIYTFIGEVVVSVNPYKVLNIYGRDTIE
QYKGRELYERPPHLFAIADAAYKAMKRRSKDTCIMISGESGAGKTEASKYIMQYIAAITNPSQR
AEIERVKNMLLKSNCVLEAFGNAKTNRNDNSSRFGKYMDINFDFKGDPIGGHINNYLLEKSRVI
VQQPGERSFHSFYQLLQGGSEQMLHSLHLQKSLSSYNYIRVGAQLKSSINDAAEFKVVADAMKV
IGFKPEEIQTVYKILAAILHLGNLKFIVDGDTPLIENGKVVSVIAELLSTKADMVEKALLYRTV
ATGRDIIDKQHTEQEASYGRDAFAKAIYERLFCWIVTRINDIIEVKNYDTTVHGKNTVIGVLDI
YGFEIFDNNSFEQFCINYCNEKLQQLFIQLVLKQEQEEYQREGIPWKHIDYFNNQIIVDLVEQQ
HKGIIAILDDACMNVGKVTDGMFLEALNSKLGKHGHFSSRKTCASDKILEFDRDFRIRHYAGDV
VYSVIGFIDKNKDTLFQDFKRLMYNSSNPVLKNMWPEGKLSITEVTKRPLTAATLFKNSMIALV
DNLASKEPYYVRCIKPNDKKSPQIFDDERCRHQVEYLGLLENVRVRRAGFAFRQTYEKFLHRYK
MISEFTWPNHDLPSDKEAVKKLIERCGFQDDVAYGKTKIFIRTPRTLFTLEELRAQMLVRVVLF
LQKVWRGTLARMRYKRTKAALTIIRYYRRYKVKSYIHEVARRFHGVKNMRDYGKHVKWPTPPKV
LRRFEEALQSIFNRWRASQLIKTIPASDLPQVRAKVAAMEMLKGQRADLGLQRAWEGNYLASKP
DTPQTSGTFVPVANELKRKDKYMNVLFSCHVRKVNRFSKVEDRAIFVTDRHLYKMDPTKQYKVM
KTIPLYNLTGLSVSNGKDQLVVFHTKDNKDLIVCLFSKQPTHESRIGELVGVLVNHFKSEKRHL
QVNVTNPVQCSLHGKKCTVSVETRLNQPQPDFTKNRSGFILSVPGN

hide sequence

Ensembl Acc Id:

ENSRNOP00000004609 ⟸ ENSRNOT00000004609

Ensembl Acc Id:

ENSRNOP00000091463 ⟸ ENSRNOT00000108255

RefSeq Acc Id:	XP_063124539 ⟸ XM_063268469
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GJN3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124538 ⟸ XM_063268468
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GJN3 (UniProtKB/TrEMBL)

Protein Domains

IQ Myosin motor TH1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q63357-F1-model_v2	AlphaFold	Q63357	1-1006	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697504

Promoter ID:

EPDNEW_R8029

Type:

initiation region

Name:

Myo1d_1

Description:

myosin ID

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	68,142,930 - 68,142,990	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621321	AgrOrtholog
BioCyc Gene	G2FUF-23964	BioCyc
Ensembl Genes	ENSRNOG00000003276	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000004609.5	UniProtKB/Swiss-Prot
	ENSRNOT00000108255.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.820	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	1.20.5.4820	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	1.20.58.530	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.40.850.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Myosin VI head, motor domain, U50 subdomain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7106587	IMAGE-MGC_LOAD
InterPro	IQ_motif_EF-hand-BS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kinesin_motor_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Myosin_head_motor_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Myosin_TH1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MYSc_Myo1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:25485	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93573	IMAGE-MGC_LOAD
NCBI Gene	25485	ENTREZGENE
PANTHER	MYOSIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	UNCONVENTIONAL MYOSIN-ID	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Myosin_head	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Myosin_TH1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PF00612	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Myo1d	PhenoGen
PRINTS	MYOSINHEAVY	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	MYOSIN_MOTOR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PS50096	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TH1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000003276	RatGTEx
SMART	MYSc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SM00015	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR	TC214852
UniProt	A0A8I6GJN3	ENTREZGENE, UniProtKB/TrEMBL
	A6HHC1	ENTREZGENE, UniProtKB/TrEMBL
	A6HHC2_RAT	UniProtKB/TrEMBL
	A6HHC3_RAT	UniProtKB/TrEMBL
	MYO1D_RAT	UniProtKB/Swiss-Prot
	Q5PQU2	ENTREZGENE
	Q63357	ENTREZGENE
UniProt Secondary	Q5PQU2	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-02	Myo1d	myosin ID	Myo1c	myosin IC	Symbol and Name updated to reflect Human and Mouse nomenclature	1298993	APPROVED
2003-04-09	Myo1c	myosin1C		myosin 1C	Symbol and Name updated	629477	APPROVED
2003-03-06	Myo1c	myosin1C	Myo1d	myosin ID	Data merged from RGD:3145	628472	PROVISIONAL
2002-11-06	Myo1d	myosin ID	Myr4	Unconventional myosin from rat 4 for myosin I heavy chain	Symbol and Name updated	625702	APPROVED
2002-08-07	Myo1c				Symbol and Name status set to provisional	70820	PROVISIONAL
2002-06-10	Myr4	Unconventional myosin from rat 4 for myosin I heavy chain			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localized to the cell bodies and apical dendrites of neurons	633383

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD