MYO1D (myosin ID) - Rat Genome Database

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Gene: MYO1D (myosin ID) Chlorocebus sabaeus
Analyze
Symbol: MYO1D
Name: myosin ID
RGD ID: 18555987
Description: ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); calmodulin binding (ortholog); microfilament motor activity (ortholog); INVOLVED IN early endosome to recycling endosome transport (ortholog); forebrain development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); FOUND IN apical dendrite (ortholog); axolemma (ortholog); basolateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: unconventional myosin-Id
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11626,050,272 - 26,425,568 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1626,049,861 - 26,425,455 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660753,614,758 - 3,993,139 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MYO1D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11626,050,272 - 26,425,568 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1626,049,861 - 26,425,455 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660753,614,758 - 3,993,139 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MYO1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381732,492,522 - 32,877,124 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1732,492,522 - 32,877,177 (-)EnsemblGRCh38hg38GRCh38
GRCh371730,819,540 - 31,204,142 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361727,843,741 - 28,228,015 (-)NCBINCBI36Build 36hg18NCBI36
Build 341727,843,740 - 28,228,015NCBI
Celera1727,729,830 - 28,114,502 (-)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1727,005,843 - 27,390,754 (-)NCBIHuRef
CHM1_11730,882,090 - 31,266,671 (-)NCBICHM1_1
T2T-CHM13v2.01733,438,289 - 33,823,203 (-)NCBIT2T-CHM13v2.0
Myo1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,372,945 - 80,670,881 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,372,952 - 80,670,851 (-)EnsemblGRCm39 Ensembl
GRCm381180,482,126 - 80,780,055 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,482,126 - 80,780,025 (-)EnsemblGRCm38mm10GRCm38
MGSCv371180,295,629 - 80,593,527 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361180,400,022 - 80,596,220 (-)NCBIMGSCv36mm8
Celera1190,120,134 - 90,418,853 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1147.95NCBI
Myo1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81065,986,900 - 66,263,538 (-)NCBIGRCr8
mRatBN7.21065,489,153 - 65,765,812 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1065,489,154 - 65,766,349 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1070,117,073 - 70,393,698 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01069,622,393 - 69,899,014 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01065,084,076 - 65,360,306 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01067,866,939 - 68,142,864 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1067,866,940 - 68,142,864 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01067,520,649 - 67,811,744 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41068,720,729 - 68,997,721 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1064,447,472 - 64,723,456 (-)NCBICelera
Cytogenetic Map10q26NCBI
Myo1d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554817,413,211 - 7,752,198 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554817,413,211 - 7,752,198 (-)NCBIChiLan1.0ChiLan1.0
MYO1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21931,581,486 - 31,964,509 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11733,462,675 - 33,845,563 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01723,900,814 - 24,283,721 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11724,287,194 - 24,574,209 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1724,284,959 - 24,572,183 (+)Ensemblpanpan1.1panPan2
MYO1D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1940,171,426 - 40,497,556 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl940,171,158 - 40,496,210 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha939,330,493 - 39,656,452 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0940,987,302 - 41,313,614 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl940,986,996 - 41,313,603 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1939,773,164 - 40,099,782 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0940,067,715 - 40,393,998 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0940,142,489 - 40,468,690 (+)NCBIUU_Cfam_GSD_1.0
Myo1d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560239,224,247 - 39,531,010 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365382,102,186 - 2,408,954 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365382,102,192 - 2,408,953 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYO1D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1242,120,368 - 42,489,194 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11242,120,373 - 42,489,191 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21243,931,996 - 44,248,454 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Myo1d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624875543,260 - 877,953 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624875544,065 - 877,958 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 29
Low 20 31
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008010998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCSAT00000004407   ⟹   ENSCSAP00000002660
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1626,049,861 - 26,425,455 (-)Ensembl
RefSeq Acc Id: XM_008010998   ⟹   XP_008009189
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11626,050,272 - 26,425,568 (-)NCBI
Vero_WHO_p1.0NW_0236660753,614,758 - 3,993,139 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008009189 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002660
  ENSCSAP00000002660.1
RefSeq Acc Id: XP_008009189   ⟸   XM_008010998
- UniProtKB: A0A0D9R221 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000002660   ⟸   ENSCSAT00000004407


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006369 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004407.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.820 UniProtKB/TrEMBL
  1.20.5.4820 UniProtKB/TrEMBL
  1.20.58.530 UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/TrEMBL
  Myosin VI head, motor domain, U50 subdomain UniProtKB/TrEMBL
InterPro IQ_motif_EF-hand-BS UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  Myosin_head_motor_dom UniProtKB/TrEMBL
  Myosin_TH1 UniProtKB/TrEMBL
  MYSc_Myo1 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report csab:103242701 UniProtKB/TrEMBL
NCBI Gene MYO1D ENTREZGENE
PANTHER MYOSIN UniProtKB/TrEMBL
  UNCONVENTIONAL MYOSIN-ID UniProtKB/TrEMBL
Pfam Myosin_head UniProtKB/TrEMBL
  Myosin_TH1 UniProtKB/TrEMBL
  PF00612 UniProtKB/TrEMBL
PRINTS MYOSINHEAVY UniProtKB/TrEMBL
PROSITE MYOSIN_MOTOR UniProtKB/TrEMBL
  PS50096 UniProtKB/TrEMBL
  TH1 UniProtKB/TrEMBL
SMART MYSc UniProtKB/TrEMBL
  SM00015 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9R221 ENTREZGENE, UniProtKB/TrEMBL